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Toward understanding the role of genomic repeat elements in neurodegenerative diseases

Neural Regeneration Research 2025年第3期20卷 646-659页

作者： Zhengyu An Aidi Jiang Jingqi chen Institute of Science and Technology for Brain-Inspired Intelligence Fudan UniversityShanghaiChina MOE Frontiers Center for Brain Science Fudan UniversityShanghaiChina MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence Fudan UniversityShanghaiChina Zhangjiang Fudan International Innovation Center ShanghaiChina

Neurodegenerative diseases cause great medical and economic burdens for both patients and society;however, the complex molecular mechanisms thereof are not yet well understood. With the development of high-coverage sequencing technology, researchers have started to notice that genomic repeat regions, previously neglected in search of disease culprits, are active contributors to multiple neurodegenerative diseases. In this review, we describe the association between repeat element variants and multiple degenerative diseases through genome-wide association studies and targeted sequencing. We discuss the identification of disease-relevant repeat element variants, further powered by the advancement of long-read sequencing technologies and their related tools, and summarize recent findings in the molecular mechanisms of repeat element variants in brain degeneration, such as those causing transcriptional silencing or RNA-mediated gain of toxic function. Furthermore, we describe how in silico predictions using innovative computational models, such as deep learning language models, could enhance and accelerate our understanding of the functional impact of repeat element variants. Finally, we discuss future directions to advance current findings for a better understanding of neurodegenerative diseases and the clinical applications of genomic repeat elements.

关键词： Alzheimer's disease ataxia deep learning long-read sequencing neurodegeneration neurodegenerative diseases Parkinson's disease repeat element structural variant

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当归多糖调节骨髓造血微环境治疗再生障碍性贫血的机制

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中国组织工程研究 2025年第1期29卷 44-51页

作者：付佳琪陈修保崔兴陈泽涛山东中医药大学中医学院山东省济南市250013 山东中医药大学附属医院老年病科山东省济南市250013 山东中医药大学第二附属医院肿瘤中心山东省济南市250001

背景:如何改善造血微环境是目前再生障碍性贫血治疗的热点问题。目的:结合GEO测序分析、网络药理学与实验验证当归多糖改善骨髓造血微环境治疗再生障碍性贫血的作用机制。方法:借助GEO数据库获得了再生障碍性贫血相关差异表达基因并进... 详细信息

背景:如何改善造血微环境是目前再生障碍性贫血治疗的热点问题。目的:结合GEO测序分析、网络药理学与实验验证当归多糖改善骨髓造血微环境治疗再生障碍性贫血的作用机制。方法:借助GEO数据库获得了再生障碍性贫血相关差异表达基因并进行GO和GSEA分析。结合文献与PubChem、SwissTargetPrediction、PharmMapper数据库获取当归多糖活性成分和靶点。取交集靶点后利用STRING和Cytoscape构建蛋白相互作用网络,并进行GO和KEGG富集分析。构建再生障碍性贫血小鼠模型,利用血细胞分析仪、流式细胞术、ELISA、免疫组化、免疫荧光染色、Western blot方法验证当归多糖对再生障碍性贫血的疗效与作用机制。结果与结论:(1)共筛选出834个差异表达基因,参与细胞发育、造血、髓系细胞分化等生物学过程;(2)检索得到当归多糖相关347个靶点并筛选出77个潜在治疗基因,其中VEGFA、EGLN1、BCL2、干扰素γ、白细胞介素2、白细胞介素4、白细胞介素6等血管生成、凋亡及免疫相关因子度值显著;(3)KEGG通路富集分析治疗靶点主要富集在Th17细胞分化、NK相关细胞毒性、细胞黏附因子等干扰素γ、白细胞介素2、白细胞介素4相关信号通路;(4)动物实验表明,当归多糖能够显著改善再生障碍性贫血小鼠骨髓造血,增加外周血细胞及骨髓单个核细胞计数,提高小鼠存活率;与模型组相比,当归多糖组小鼠Th1/Th2细胞比例显著下降(P<0.01),干扰素γ水平显著降低(P<0.01),白细胞介素4水平升高(P<0.05),VEGFA表达显著升高(P<0.01),EGLN1表达显著降低(P<0.01),骨髓单个核细胞凋亡率、活性氧水平显著降低(P<0.01),Cleaved Caspase-3蛋白表达显著增高(P<0.01),Bcl-2/Bax比值显著降低(P<0.01);(5)结果表明:当归多糖能够通过调节异常T细胞亚群,促进血管生成以改善造血微环境,并抑制骨髓单个核细胞凋亡,以改善再生障碍性贫血小鼠的造血功能。

关键词：当归多糖再生障碍性贫血 Th1/Th2 骨髓造血微环境细胞凋亡

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Insights into influence of aging processes on zero-valent iron modified biochar in copper(II) immobilization: from batch solution to pilot-scale investigation

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Frontiers of Chemical Science and Engineering 2023年第7期17卷 880-892页

作者： Huabin Wang Dingxiang chen Yi Wen Ting cui ying Liu Yong Zhang Rui Xu School of Energy and Environment Science Yunnan Normal UniversityKunming 650500China Yunnan Key Laboratory of Rural Energy Engineering Kunming 650500China

The zero-valent iron modified biochar materials are widely employed for heavy metals ***,these materials would be inevitably aged by natural forces after entering into the environment,while there are seldom studies reported the aging effects of zero-valent iron modified *** this work,the hydrogen peroxide and hydrochloric acid solution were applied to simulate aging conditions of zero-valent iron modified *** to the results,the adsorption capacity of copper(II)contaminants on biochar,zero-valent iron modified biochar-1,and zero-valent iron modified biochar-2 after aging was decreased by 15.36%,22.65%and 23.26%,*** surface interactions were assigned with chemisorption occurred on multi-molecular layers,which were proved by the pseudo-second-order and Langmuir *** aging,the decreasing of capacity could be mainly attributed to the inhibition of ion-exchange and zero-valent iron ***,the plant growth and soil leaching experiments also proved the effects of aging treatment,the zero-valent iron modified biochar reduced the inhibition of copper(II)bioavailability and increased the mobility of copper(II)after *** these results bridged the gaps between bio-adsorbents customization and their environmental behaviors during practical agro-industrial application.

关键词： zero-valent iron modified biochar aging processes copper removal adsorption pilot-scale experiments

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The pharmacology, toxicology and therapeutic potential of anthraquinone derivative emodin

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Chinese Journal of Natural Medicines 2020年第6期18卷 425-435页

作者： cui Ya chen Liu-Jing HUANG Tu ying Jian-Qiong LI Juan State Key laboratory of Oral Diseases West China Hospital of StomatologySichuan UniversityChengdu 610041China Department of orthodontics West China School of Stomatology Sichuan UniversityChengdu 610041China West China Hospital of Clinical Medicine Sichuan UniversityChengdu 610041China

Emodin(1, 3, 8-trihydroxy-6-methylanthraquinone) is a derived anthraquinone compound extracted from roots and barks of pharmaceutical plants, including Rheum palmatum, Aloe vera, Giant knotweed, Polygonum multiflorum and Polygonum cuspidatum. The review aims to provide a scientific summary of emodin in pharmacological activities and toxicity in order to identify the therapeutic potential for its use in human specific organs as a new medicine. Based on the fundamental properties, such as anticancer, anti-inflammatory, antioxidant, antibacterial, antivirs, anti-diabetes, immunosuppressive and osteogenesis promotion, emodin is expected to become an effective preventive and therapeutic drug of cancer, myocardial infarction, atherosclerosis, diabetes, acute pancreatitis, asthma, periodontitis, fatty livers and neurodegenerative diseases. This article intends to provide a novel insight for further development of emodin, hoping to reveal the potential of emodin and necessity of further studies in this field.

关键词： Emodin Pharmacological activities Toxicity Therapeutic potential

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Mechanistic insight into the synergy between nickel single atoms and nanoparticles on N-doped carbon for electroreduction of CO2

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Journal of Energy Chemistry 2025年第1期100卷 327-336页

作者： Mingdong Sun Wenwen Guan Cailing chen Chao Wu Xiaoling Liu Biao Meng Tao chen Yu Han Jun Wang Shibo Xi Yu Zhou State Key Laboratory of Materials-Oriented Chemical Engineering College of Chemical Engineering Nanjing Tech University Advanced Membranes and Porous Materials Center Physical Sciences and Engineering Division King Abdullah University of Science and Technology Institute of Sustainability for Chemicals Energy and Environment A*STAR (Agency for Science Technology and Research) College of Materials Science and Engineering Sichuan University

The synergy of single atoms （SAs） and nanoparticles （NPs） has demonstrated great potential in promoting the electrocatalytic carbon dioxide reduction reaction （CO2RR）;however,the rationalization of the SAs/NPs proportion remains one challenge for the catalyst ***,a Ni2+-loaded porous poly（ionic liquids）(PIL) precursor synthesized through the free radical self-polymerization of the ionic liquid monomer,1-allyl-3-vinylimidazolium chloride,was pyrolyzed to prepare the Ni,N co-doped carbon materials,in which the proportion of Ni SAs and NPs could be facilely modulated by controlling the annealing *** catalyst Ni-NC-1000 with a moderate proportion of Ni SAs and NPs exhibited high efficiency in the electrocatalytic conversion of CO2into *** Ni K-edge X-ray absorption near-edge structure （XANES） spectra and theoretical calculations were conducted to gain insight into the synergy of Ni SAs and *** charge transfer from Ni NPs to the surrounding carbon layer and then to the Ni SAs resulted in the electron-enriched Ni SAs active *** the electroreduction of CO2,the coexistence of Ni SAs and NPs strengthened the CO2activation and the affinity towards the key intermediate of*COOH,lowering the free energy for the potential-determining*CO2→*COOH step,and therefore promoted the catalysis efficiency.

关键词： Single atom catalyst Synergy effect Carbon catalyst Electrocatalysis

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Advances in ethnopharmacology,phytochemistry and pharmacology of Erigerontis Herba and its Chinese medicine prescriptions

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Traditional Medicine Research 2025年第1期10卷 44-61页

作者： Yang Zhou Yuan-Yan Huang Ding-Yue Shang ying chen Meng Tian cheng-Yu Jin Xin Lu Bing-Chun Yan Han-Qing Pang Institute of Translational Medicine School of MedicineYangzhou UniversityYangzhou 225009China Jiangsu Key Laboratory of Integrated Traditional Chinese and Western Medicine for Prevention and Treatment of Senile Diseases Yangzhou UniversityYangzhou 225009China School of Medicine Nanjing University of Chinese MedicineNanjing 210023China State Key Laboratory for Chemistry and Molecular Engineering of Medicinal Resources Guangxi Normal UniversityGuiling 541004China.

Erigerontis Herba(EH),the dried whole plant of Erigeron breviscapus,is well-known for circulating blood,activating meridians to alleviate pain,expelling wind,and clearing away *** has been extensively utilized in southern China for the treatment of stroke hemiplegia,chest stuffiness and pains,rheumatic arthralgia,headache,and *** review focuses on the botany,ethnopharmacology,phytochemistry,pharmacology and toxicity of EH and its related prescriptions to offer new insights for prospective research of *** information about EH was retrieved from ancient records and books,PubMed,China National Knowledge Infrastructure,Chinese Pharmacopoeia,Web of Science,Doctoral and Master’s Theses,and various electronic *** is a member of Compositae family and is mainly grown in southern *** Chinese medicine records that EH has the effects of circulating blood and removing blood stasis,expelling wind,and removing cold,as well as relieving rigidity of muscle and relieving *** now,nearly 200 ingredients have been characterized from EH,including flavonoids,caffeoyls,aromatic acids,coumarins,pentacyclic terpenoids,volatile oil and other *** extracts,EH related prescriptions(Dengzhan Xixin injection,Dengzhan Shengmai capsules,etc.)or compounds(scutellarin,scutellarein,etc.)possessed obvious therapeutic effects of ischemic stroke,cerebral hemorrhage,myocardial infarction,Alzheimer’s disease,diabetes and its complications,gastric cancer,bone,and joint degenerative ***,the major active compound of EH,has been used as a quality *** no obvious toxicity of EH has been *** to its traditional applications,ethnopharmacology,phytochemistry,pharmacology,and toxicity,EH was applied as a valuable herb for clinical application in food and medicine *** several compounds have been shown to possess diverse biological activities,the underlying mechanisms of their actions remain *** fully exploi

关键词： Erigeron breviscapus traditional applications ethnopharmacology phytochemistry pharmacology

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Spraying Arginine at 5 Days before Harvest Delays Postharvest Broccoli Senescence via Nutrient Accumulation

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食品科学 2025年第1期46卷 131-141页

作者： SUN Yupeng chen ying SHANG Qingwen GUO Yanyin ZHANG Yuxiao WANG Yunqiao XUE Qingyue College of Agricultural Engineering and Food Science Shandong University of TechnologyZibo 255049China Zichuan District Agricultural and Rural Affairs Service Center Zibo 255049China

To determine the effects of preharvest arginine spraying on the nutritional level of broccoli and the mechanism of action of arginine in improving the storage quality of broccoli,arginine spraying(5 mmol/L)was conducted at 0,1,3,and 5 days before *** appearance,respiration rate,mass-loss rate,electrolyte leakage,glucosinolate,ascorbic acid,total phenol,total flavonoid,total sugar and sucrose contents,and sucrose phosphate synthase(SPS),invertase(INV),sucrose synthase synthesis(SSS)and cleavage(SSC)activities of broccoli samples were observed after 0,2,4,6,8,and 10 days of *** results showed that spraying arginine at 5 days preharvest(5-ARG)helped to inhibit broccoli respiration during storage,delay electrolyte leakage,and maintain broccoli ***,during the growth stage,total sugar accumulation was higher in the 5-ARG *** addition,during the storage period,sucrose synthesis was accelerated,while sucrose cleavage was inhibited,resulting in more sucrose retention in postharvest *** conclusion,5-ARG resulted in the accumulation of more nutrients during the growth process and effectively delayed the quality decline during storage,thereby prolonging the shelf life of ***,this study provides a theoretical basis for improving postharvest storage characteristics of broccoli through preharvest treatments.

关键词： arginine broccoli preharvest spraying nutrient accumulation storage quality postharvest senescence

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Ammonia pyrolysis oxidation excited by nanosecond pulsed discharge:Global/fluid models hybrid solution

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Journal of Energy Chemistry 2025年第1期100卷 385-396页

作者： Mingming Zhang Hanyu Wu Qi chen Jiaxin Yang Bonan Liu School of Mechanical Electronic and Control Engineering Beijing Jiaotong University China University of Petroleum

The kinetic characteristics of plasma-assisted oxidative pyrolysis of ammonia are studied by using the global/fluid models hybrid solution ***,the stable products of plasma-assisted oxidative pyrolysis of ammonia are *** results show that the consumption of NH3/O2and the production of N2/H2change linearly with the increase of voltage,which indicates the decoupling of nonequilibrium molecular excitation and oxidative pyrolysis of ammonia at low ***,the detailed reaction kinetics mechanism of ammonia oxidative pyrolysis stimulated by a nanosecond pulse voltage at low pressure and room temperature is *** on the reaction path analysis,the simplified mechanism is *** detailed and simplified mechanism simulation results are compared with experimental data to verify the accuracy of the simplified ***,based on the simplified mechanism,the fluid model of ammonia oxidative pyrolysis stimulated by the nanosecond pulse plasma is established to study the pre-sheath/sheath behavior and the resultant consumption and formation of key *** results show that the generation,development,and propagation of the pre-sheath have a great influence on the formation and consumption of *** consumption of NH3by the cathode pre-sheath is greater than that by the anode pre-sheath,but the opposite is true for OH and O（1S）.However,within the sheath,almost all reactions do not ***,by changing the parameters of nanosecond pulse power supply voltage,it is found that the electron number density,electron current density,and applied peak voltages are not the direct reasons for the structural changes of the sheath and ***,the discharge interval has little effect on the sheath structure and gas mixture *** research results of this paper not only help to understand the kinetic promotion of non-equilibrium excitation in the process of oxidative pyrolysis but also help to explore th

关键词： Nanosecond pulsed discharge Ammonia Oxidative pyrolysis Fluid model Global model

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Early Triassic Legoupil Formation in Schmidt Peninsula,Antarctic Peninsula:Provenance and Depositional Settings

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Journal of Earth Science 2024年第2期35卷 317-331页

作者： Chao Zhang ying-Chun cui chen-Guang Liu Fang-Hua cui Lu-Yuan Wang Wei-Qiang Zhang School of Resources and Environmental Engineering Shandong University of TechnologyZibo255049China MNR Key Laboratory for Polar Science Polar Research Institute of ChinaShanghai201209China Key Laboratory of Marine Sedimentology and Environmental Geology First Institute of OceanographyState Oceanic AdministrationQingdao266061China Laboratory for Marine Geology Qingdao National Laboratory for Marine Science and TechnologyQingdao266061China Key Laboratory of Mineral Resources Evaluation in Northeast Asia Ministry of Land and ResourcesChangchun130061China

Geochemical compositions can be used to determine the tectonic setting of sedimentary basins,while where the link of source to sink is no longer preserved,detrital zircon age patterns can aid in resolving the original basin *** metasedimentary Legoupil Formation,located at Cape Legoupil and the Schmidt Peninsula,could give a hint for the tectonic evolution of Antarctic *** this contribution,we constrain the sedimentary provenance of the Legoupil Formation through geochemistry and detrital zircon U-Pb *** petrography and geochemical features indicate that the provenance of the Legoupil Formation could be felsic *** zircon grains record a steady supply of Permian and Ordovician material into the Legoupil *** youngest concordant zircon ages of 262 Ma suggest that the depositional time of Legoupil Formation is no older than Late *** detrital zircon age spectrum of Legoupil Formation suggests that the Legoupil Formation sediments should be derived from regional sources endemic to western Gondwana prior to its *** with the previous studies,geochemistry and detrital zircons reflect an active continental margin tectonic setting and the detrital zircon spectra of Legoupil Formation are similar to the ones deposited in forearc tectonic setting.

关键词： Schmidt Peninsula Legoupil Formation Trinity Peninsula Group detrital zircons Antarctic Peninsula geochemistry

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Application effect for a care bundle in optimizing nursing of patients with severe craniocerebral injury

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World Journal of Clinical Cases 2021年第36期9卷 11265-11275页

作者： ying Gao Li-Ping Liao Peng chen Ke Wang cui Huang ying chen Shao-Yu Mou Department of Neurosurgery Chongqing Emergency Medical CenterChongqing 400014China School of Nursing Chongqing Medical UniversityChongqing 400016China

BACKGROUND Severe craniocerebral injury(STBI)is a critical physical trauma caused by a sudden external force acting on the *** condition is complex and changeable,and disability and mortality rates are *** the life of STBI patients can be saved through treatment,the sequelae of consciousness,speech,cognitive impairment,stiffness,spasm,pain and abnormal behavior in the early rehabilitation stage can be a heavy burden to a *** the past,routine nursing was often used to treat/manage STBI;however,problems,such as improper cooperation and untimely communication,reduced therapeutic *** To investigate the effect of a proposed care bundle to optimize the first aid process and assess its effectiveness on the early rehabilitation nursing of patients with *** From January 2019 to December 2020,126 STBI patients were admitted to the emergency department of Chongqing Emergency Medical *** patients were retrospectively selected as the research participants in the current *** study participants were then divided into a control group(61 cases)and a study group(65 cases).The control group was treated with routine *** study group adopted the proposed care *** National Institutes of Health Stroke Scale/Score and Glasgow Coma Scale(GCS)were used to evaluate neurological function before and after emergency *** 3 mo of rehabilitation,experimental outcomes were *** included the GCS,Barthel Index,complication rate,muscle strength grade and *** There was no significant difference in gender,age,cause of injury and GCS between the two *** emergency,the National Institutes of Health Stroke Scale/Score of the study group(10.23±3.26)was lower than that of the control group(14.79±3.14).The GCS score of the study group(12.48±2.38)was higher than that of the control group(9.32±2.01).The arrival time of consultation in the study group was 20.56±19.12,and the retention time in th

关键词： Severe craniocerebral injury Care bundle Emergency treatment Early rehabilitation Clinical application

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