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A new DNA algorithm to solve graph coloring problem

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Progress in Natural Science:Materials International 2007年第6期17卷 733-738页

作者： Jiang Xingpeng1, Li Yin2, Meng Ya3.and Meng Dazhi2(1. National Laboratory of Pattern Recognition,Institute of Automation, Chinese Academy of sciences, Beijing 100080, china 2. college of applied sciences, Beijing {3. of technology, Beijing 100022, china 3. School of Science, Beijing Institute of technology, Beijing 100081, china) National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing 100080 China college of applied sciences Beijing University of Technology Beijing 100022 China School of Science Beijing Institute of Technology Beijing 100081 China

Using a small quantity of DNA molecules and little experimental time to solve complex problems successfully is a goal of DNA computing. Some NP-hard problems have been solved by DNA computing with lower time complexity than conventional computing. However, this advantage often brings higher space complexity and needs a large number of DNA encoding molecules. One example is graph coloring problem. Current DNA algorithms need exponentially increasing DNA encoding strands with the growing of problem size. Here we propose a new DNA algorithm of graph coloring problem based on the proof of four-color theorem. This algorithm has good properties of needing a relatively small number of operations in polynomial time and needing a small number of DNA encoding molecules (we need only 6R DNA encoding molecules if the number of regions in a graph is R).

关键词： DNA computing NP-hard problem graph coloring problem.

Characteristics of fMRI BOLD signal and its neurophysiological mechanism

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Progress in Natural Science:Materials International 2007年第6期17卷 630-638页

作者： Zhao Xiaohu1,2, Wu Yigen3.and Guo Shengli3.1. college of Life sciences, Zhejiang university, Hangzhou 3.0058,{3. 2. Imaging Department of Tongji Hospital of Tongji university, Shanghai 200065,{3. 3. college of Mathematics and Physics, Nanjing university of Information Science and technology, Nanjing 210044,{3.) college of Life sciences Zhejiang University Hangzhou 310058 China Imaging Department Tongji Hospital Tongji University Shanghai 200065 China college of Mathematics and Physics Nanjing University of Information Science and Technology Nanjing 210044 China

The functional magnetic resonance imaging (fMRI) based on blood oxygen level dependent (BOLD) contrast has emerged as one of the most potent noninvasive tools for mapping brain function and has been widely used to explore physiological, pathological changes and mental activity in the brain. Exploring the nature and property of BOLD signal has recently attracted more attentions. Despite that great progress has been made in investigation of the characteristics and neurophysiological basis, the exact nature of BOLD signal remains unclear. In this paper we discuss the characteristics of BOLD signals, the nonlinear BOLD response to external stimuli and the relation between BOLD signals and neural electrophysiological recordings. Furthermore, we develop our new opinions regarding nonlinear BOLD response and make some perspectives on future study.

关键词： functional magnetic resonance imaging blood oxygen level dependent nonlinear response neural electrophysiological activity.

The characteristics of arc beam shaping in hybrid plasma and laser deposition manufacturing

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Science china(Technological sciences) 2006年第2期49卷 238-247页

作者： ZHANG Hai’ou1, QIAN Yingping1,3. WANG Guilan1 & ZHENG Qiguang2 1. School of Material Science and technology, Huazhong university of Science and technology, Wuhan 43.074,{3. 2. Institute of Laser technology and Engineering, Huazhong university of Science and technology, Wuhan 43.074,{3. 3. Mechanical Engineering college, Hubei university of technology, Wuhan 43.068,{3. 1. School of Material Science and technology Huazhong University of Science and Technology Wuhan 430074 China 3. Mechanical Engineering college Hubei University of Technology Wuhan 430068 China 2. Institute of Laser technology and Engineering Huazhong University of Science and Technology Wuhan 430074 China

As a new direct metal prototyping technology,the hybrid plasma and laser deposition manufacturing (PLDM) is proposed in this paper. In order to figure out the characteristics of plasma arc beam and mould in the PLDM process of high temperature alloy, the high speed CCD camera is used to obtain the picture around the plasma arc. Afterwards the sketch of picture is clearly obtained. And the effect of laser parameter, such as average power, pulse width, pulse repetition frequency and the angle between laser beam and plasma arc beam on the plasma arc appearance, is studied experimentally. The results show that the modality of plasma arc beam is markedly influenced by laser beam. And the improvements of shape precision and surface state of the layer deposited by PLDM are confirmed.

关键词： plasma hybrid laser, direct deposition, plasma arc beam, molding character, high-temperature alloy.

A new family of windows——convolution windows and their applications

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Science china(Technological sciences) 2005年第4期48卷 468-480页

作者： ZHANG Jieqiu1,2, LIANG Changhong1 & CHEN Yanpu3.1. Department of applied Math. & Phys., college of Science, Airforce Engineering university, Xi’an 710051,{3. 2. National Key Laboratory of Antennas and Microwave technology, Xidian university, Xi’an 710071,{3. 3. Computer Center, Xi’an Communication college, Xi’an 710106,{3. 1. Department of applied Math. & Phys. College of Science Airforce Engineering University 710051 Xi’an China 2. National Key Laboratory of Antennas and Microwave technology Xidian University 710071 Xi’an China 3. Computer Center Xi’an Communication College 710106 Xi’an China

A new family of windows is constructed by convolutions via a few rectangular windows with same time width and is thus referred to as convolution windows. The expressions of the second-order up to the eighth-order convolution windows in both the time and frequency domains are derived. Their applications in high accuracy harmonic analysis of periodic signals are investigated. Comparisons between the proposed windows and some known windows with the same width shows that, when the synchronous deviation of data sampling is slight, the proposed ones have the least effect of spectral leakage. Therefore, the new windows are well suited for high accuracy harmonic analysis and parameter estimation for periodic signals. The error analysis and computer simulations show that the estimation errors, corresponding to frequency, amplitude and phase of every harmonic component of a signal, are proportional to the pth power of the relative frequency deviation in case of the pth-order convolution window is applied to windowing signal of approximately p cycles. By introducing real time adjustment in sampling interval, the proposed algorithm can adaptively trace signal frequency and lead to less sampling synchronous deviation. The proposed approach has the advantages of easy implementation and high measure precision and can be used in harmonic analysis of quasi-periodic signals whose fundamental frequency drifts slowly with time.

关键词： signal processing harmonic analysis window function convolution window synchronous error spoctral leakage

On the periodic solutions of a type of differential-iterative equations

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Chinese Science Bulletin 1998年第3期43卷 204-206页

作者： GE Weigao 1, LIU Zhengrong 2 and YU Yuanhong 3.1. Department of applied Mathematics, Beijing Institute of technology, Beijing 100081, china 2. Department of Mathematics, Yunnan {3., Kunming 650091, china 3. Institute of applied Mathematics, C Department of applied Mathematics Beijing Institute of Technology Beijing China Department of Mathematics Yunnan University Kunming China Institute of applied Mathematics Chinese Academy of Sciences Beijing China

Sufficient conditions for the existence of periodic solutions to a type of nonautonomous differential_iterative equations are given.

关键词： differential_iterative equation periodic solution fixed point.

Role of gallium wetting layer in high-quality ZnO growth on sapphire (0001) substrates

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Science china(Physics,Mechanics & Astronomy) 2004年第5期47卷 612-620页

作者： ZENG Zhaoquan1,3. WANG Yong2, DU Xiaolong1, MEI Zengxia1, KONG Xianghe3. JIA Jinfeng1, XUE Qikun1 & ZHANG Ze2, 4 1. State Key Laboratory for Surface Physics, Institute of Physics, Chinese Academy of sciences, Beijing 100080, china 2. Laboratory of Electron Microscopy, Institute of Physics, Chinese Academy of sciences, Beijing 100080, china 3. college of Physics and Engineering, Qufu Normal university, Qufu 273.65, china 4. Beijing university of technology, Beijing 100022, china 1. State Key Laboratory for Surface Physics Institute of Physics Chinese Academy of Sciences 100080 Beijing China 2. college of Physics and Engineering Qufu Normal University 273165 Qufu China 3. Laboratory of Electron Microscopy Institute of Physics Chinese Academy of Sciences 100080 Beijing China 4. Beijing university of technology 100022 Beijing China

A Ga wetting layer was used to modify the surface structure of sapphire (0001) substrate to prepare high-quality ZnO film by radio frequency plasma-assisted molecule beam epitaxy. We found that this Ga layer plays a crucial role in eliminating 3. rotation domains, controlling polarity and decreasing defect density in ZnO epilayers, as demonstrated by in situ reflection high energy electron diffraction, ex situ high resolution X-ray diffraction and high resolution cross-sectional transmission electron microscopy. Zn-polar film of ZnO was determined by convergent beam electron diffraction. A Ga bilayer model is proposed to understand the effects of the Ga wetting layer on high-quality ZnO growth.

关键词： Ga wetting layer, sapphire, polarity, defect density, zinc oxide, rf-MBE, RHEED, HRXRD, TEM, CBED.

Statistical theory for hydrogen bonding fluid system of A_aD_d type (I): The geometrical phase transition

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Science china Chemistry 2006年第6期49卷 499-506页

作者： WANG Haijun1,2, HONG Xiaozhong3. GU Fang1 & BA Xinwu1 1. college of Chemistry and Environment Science, Hebei university, Baoding 071002, china 2. International Center for Materials Physics, Chinese Academy of {3., Shenyang 110016, china 3. college of Physics Science and technology, Hebei university, Baoding 071002, china 1. college of Chemistry and Environment Science Hebei University Baoding 071002 China 2. International Center for Materials Physics Chinese Academy of Sciences Shenyang 110016 China 3. college of Physics Science and technology Hebei University Baoding 071002 China

The influence of hydrogen bonds on the physical and chemical properties of hydrogen bonding fluid system of AaDd type is investigated from two viewpoints by the principle of statistical mechanics. In detail, we proposed two new ways that can be used to obtain the equilibrium size distribution of the hydrogen bonding clusters, and derived the analytical expression of a relationship between the hydrogen bonding free energy and hydrogen bonding degree. For the nonlinear hydrogen bonding systems, it is shown that the sol-gel phase transition can take place under proper conditions, which is further proven to be a kind of geometrical phase transition rather than a thermodynamic one. Moreover, several problems associated with the geometrical phase transition and liquid-solid phase transition in nonlinear hydrogen bonding systems are discussed.

关键词： hydrogen bonding fluid, equilibrium free energy, geometrical phase transition.

Adsorption of surfactants onto acrylic ester resins with different pore size distribution

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Science china Chemistry 2006年第5期49卷 445-453页

作者： YANG Weiben1,2,3.LI Aimin1,3.CAI Jianguo1,3.MENG Guanhua1,3.& ZHANG Quanxing1,3.1. State Key Laboratory of Pollution Control and Resource Reuse,School of the Environment,Nanjing university,Nanjing 210093.china 2. Nanjing college of Chemical {3.,Nanjing 210048,china 3. Jiangsu Engineering & {3. Research Center for Organic Toxicant Control and Resource Reuse,Nanjing 21003.,china 1. State Key Laboratory of Pollution Control and Resource Reuse School of the Environment Nanjing University Nanjing 210093 China 2. Nanjing college of Chemical technology Nanjing 210048 China 3. Jiangsu Engineering & technology Research Center for Organic Toxicant Control and Resource Reuse Nanjing 210038 China

In this study, a series of acrylic ester resins with different pore size distribution were prepared successfully by varying the type and the amount of pore-forming agents. In order to inves-tigate the adsorption behavior and mechanism of surfactants on acrylic ester resins, three kinds of surfactants were utilized as adsorbates that were sodium 6-dodecyl benzenesulfonate (6-NaDBS), sodium 1-dodecyl benzene sulfonate (1-NaDBS) and sodium 1-dodecyl sulfonate, respectively. It was observed that the surface area was available in a particular pore size and an appropriate pore size of resins appeared to be more important for the adsorption of surfactants. As compared to commercial acrylic ester resins XAD-7 and HP2MG, 50# and 3.# resins exhibited more excellent adsorption properties toward 1-NaDBS and 6-NaDBS. The experimental equilibrium data were fitted to the Langmuir, and double-Langmuir models. Two models provided very good fittings for all resins over the temperature range studied. The investigation indicated that electrostatic attraction and hydrogen bond between resins and surfactants were the main forces and had an obvious effect on adsorption proc-ess.

关键词： acrylic ester resin, surfactant, adsorption, pore size distribution, isotherm.

Regulation of eight avr genes by hrpG and hrpX in Xanthomonas campestris pv. campestris and their role in pathogenicity

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Progress in Natural Science:Materials International 2006年第12期16卷 1288-1294页

作者： XU Rongqi~ 1,3., LI Xianzhen~3. WEI Hongyu~3. JIANG Bole~2, LI Kai~3. HE Yongqiang~ 2,3., FENG Jiaxun~ 1,3.and TANG Jiliang~ 1,2 **(1. Guangxi Key Laboratory of Subtropical Bioresources Conservation and Utilization 2. The Key Laboratory of Ministry of Education for Microbial and Plant Genetic Engineering 3. college of Life Science and technology, Guangxi university, Nanning 53.004,{3.) Guangxi Key Laboratory of Subtropical Bioresources Conservation and Utilization Guangxi University Nanning 530004 China college of Life Science and technology Guangxi University Nanning 530004 China The Key Laboratory of Ministry of Education for Microbial and Plant Genetic Engineering Guangxi University Nanning 530004 China

Eight putative avirulence genes in Xanthomonas campestris pv. campestris (Xcc) strain 8004 were characterized by Tn5gusA5 mutagenesis and gene expression analysis. The virulence test of mutants on Chinese radish showed that all mutants in individual avr genes except avrBs2 mutant were not significantly different from the wild type in virulence. The avrBs2 mutant showed reduced virulence and bacterial growth in planta. Gene expression analysis using β-glucuronidase as reporter indicated that avrBs1.1,avrBs1,avrXccB,avrXccC,avrXccE1 were regulated by hrpG, whereas avrXccA1, avrXccA2 and avrBs2 were not. RT-PCR analysis showed that all hrpG-regulated genes except avrBs1 were also regulated by hrpX. In addition, it was demonstrated that avrBs1 was responsible for elicitation of a type III dependent hypersensitive reaction (HR) on nonhost plant pepper ECW-10R, and wild type Xcc 8004 was unable to cause HR on pepper ECW-20R.

关键词： Xanthomonas campestris pv. campestris avirulence gene virulence expression analysis.