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Stepped machine learning for the development of mineral models: Concepts and applications in the pre-salt reservoir carbonate rocks

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能源与人工智能(英文) 2021年第1期3卷 167-179页

作者： Lucas Abreu Blanes de Oliveira Luiz Felipe Niedermaier Custodio Thais Bortotti Fagundes Carina Ulsen cleyton de carvalho carneiro Petrobras–Petroleo Brasileiro S.A. Avenida Henrique Valadares 28CentroRio de Janeiro20231-030 Rio de JaneiroBrazil Universidade de Sao Paulo USPEscola PolitecnicaPraça Narciso de AndradeVila MathiasSantosSão Paulo 11013-560Brazil

Understanding rock mineralogy is essential for formation evaluation,improving the calculation of porosity and hydrocarbon *** primary method to obtain the mineralogy from a well is by applying a model to the geochemical tool’s chemical ***,creating a mineralogical model presents challenges such as the minerals’chemical composition and the decision to include a mineral in the *** traditional application of machine learning can make mineral models less realistic since conventional training is developed based on a set of minerals with different occurrences,lowering some minerals’*** present research proposes the stepped machine learning(SML),a stepped way to use machine learning to create a mineralogical model from chemical and mineralogical data.A database was assembled with the elemental concentration obtained with XRF analyses and the mineral concentrations obtained with XRD *** chemical elements were Al,Ca,Fe,K,Mg,Mn,Na,Si,and *** minerals were calcite,dolomite,quartz,clays,K-feldspar,plagioclase,and *** algorithms were tested:MLP,GAN,Random Forest,and XGBoost,with XGBoost showing the best *** was applied,where a mineral model results are used to train a subsequent *** allowed for a significant improvement in some models,notably to clays with an increase in R 2 from 0.597 to 0.853,quartz an increase from 0.673 to 0.869,and calcite,from 0.758 to 0.862.A decrease in the mean squared error of these minerals’models was also *** model was applied to the geochemical logs from three wells drilled in the Brazilian pre-salt,and the results were compared with XRD *** SML model was able to honor the mineral concentrations for different *** is demonstrated that the integration between machine learning tools and geological knowledge in SML was crucial for creating a representative mineralogical model.

关键词： minerals quartz reservoir

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Combined Oxidative Phosphorylation deficiency-20-Exome as a Diagnostic Implement

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Journal of Biosciences and Medicines 2024年第6期12卷 7-12页

作者： Paulo Roberto Matos-Neto Lucas Antonissen Lima Verde Airton Ferreira da Ponte-Filho Luís Eduardo Oliveira Matos Amandha Espavier Trés Paulo Roberto Lacerda Leal Gerardo Cristino-Filho Regina Coeli de carvalho Porto carneiro Faculty of Medicine Federal University of Cear Sobral Cear Brazil department of Neurosurgery Federal University of Cear Sobral Cear Brazil department of Neuropediatrics Federal University of Cear Sobral Cear Brazil

Mitochondrial disorders are phenotypically varied, with serious clinical repercussions. Among them, there is the deficiency of combined oxidative phosphorylation of type 20, which occurs due to a defect in the VARS2 gene. This article presents a case of a 2-year-old female with progressive myoclonic epilepsy and psychomotor regression, with refractoriness to multiple anticonvulsants. The diagnosis was only made after the examination was carried out. Therefore, this article highlights the aspects of this rare disease and the importance of the exome for the diagnosis of rare conditions.

关键词： Oxidative Phosphorylation Epilepsy Exome Mitochondrial defect VARS2

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Antinociceptive and anti-inflammatory activities of leaf extracts from Annona tomentosa ***

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Journal of Integrative Medicine 2017年第5期15卷 379-387页

作者： Lilian Uchoa carneiro Ilna Gomes da Silva Mirian Eliza Alves de Souza Wellington da Silva Cortes Mário Geraldo de carvalho Bruno Guimaraes Marinho Postgraduate Program in Physiological Sciences Institute of Biological and Health SciencesFederal Rural University of Rio de JaneiroRio de Janeiro 23890-000Brazil Laboratory of Pharmacology Department of Physiological SciencesInstitute of Biological Sciences and HealthFederal Rural University of Rio de JaneiroRio de Janeiro 23890-000Brazil Postgraduate Program in Chemistry Department of ChemistryInstitute of Exact SciencesFederal Rural University of Rio de JaneiroRio de Janeiro 23890-000Brazil

OBJECTIVE：Annona tomentosa *** is a species not endemic to Brazil that belongs to the phytogeographic areas of the Amazon,Cerrado and *** known as“araticum rasteiro”or“araticum de moita”,*** is edible and tea made from the leaves has been used as an antiinflammatory by native *** is no scientific evidence for these uses of ***,especially those related to the control of pain and *** this reason,in the present study we evaluated the antinociceptive and anti-inflammatory activities of partitions from the methanolic extract of *** leaves（*** leaf methanolic extract（ATFM）in hexane partition：ATFM-H;ATFM in dichloromethane partition：ATFM-D;ATFM in ethyl acetate partition：ATFM-Ac;ATFM in butanol partition：ATFM-B）in ***：The antinociceptive effects of leaf extracts from *** were evaluated by abdominal writhing and tail-flick tests,while the anti-inflammatory effects were evaluated by paw oedema and air-pouch *** locomotor activity was evaluated with the open-field ***,we evaluated the possible action mechanism of ***,using naloxone,nitro-L-arginine methyl ester,glibenclamide,atropine,naltrindole and norbinaltorphimine in tail-flick *** productions of tumor necrosis factorα（TNF-α）and interleukin（IL）-1βwere also ***：The chromatographic fractionation of the partitions of the methanolic extract from the leaves of *** revealed the presence of diterpenes,flavonoids,and steroids *** the analysis of the hexane partition kaurenoic acid was identified as the major ***-H and ATFM-D had a significant antinociceptive effect in acute pain models in *** ATFM-H showed central antinociceptive effect from the involvement of theδopioid receptors,without causing alterations in the locomotor activity of the mice,while ATFM-D was effective in decreasing paw oedema and TNF-α and IL-1β ***：These results demon

关键词： Annona tomentosa cytokines opioid nociception

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Sweet syndrome as a paraneoplastic manifestation of cholangiocarcinoma:A case report

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World Journal of Clinical Cases 2020年第18期8卷 4122-4127页

作者： Camille carneiro Lemaire Ana Luisa carvalho Portilho Luciana V Pinheiro Rafael Alves Vivas Maíra Britto Melaine Montenegro Luiz Felipe de Farias Rodrigues Sérgio Arruda AndréCastro Lyra Lourianne Nascimento Cavalcante department of Internal Medicine Escola Bahiana de Medicina e Saúde PúblicaSalvador 40290-000BahiaBrazil department of Internal Medicine Hospital Geral Roberto SantosSalvador 41180-780BahiaBrazil department of Surgery Hospital Geral Roberto SantosSalvador 41180-780BahiaBrazil department of Gastroenterology and Hepatology Hospital Geral Roberto SantosSalvador 41180-780BahiaBrazil department of Radiology Hospital Geral Roberto SantosSalvador 41180-780BahiaBrazil Pathological Anatomy Fiocruz-BahiaUniversidade Estadual da BahiaSalvador 40000-000BahiaBrazil department of Medicine Division of Gastroenterology and HepatologyFederal University of Bahia and Gastro-Hepatology ServiceSalvador 40295-050BahiaBrazil department of Medicine Division of Gastroenterology and HepatologyFederal University of Bahia and SED-CHD Hospital Geral Roberto SantosSalvador 40295-050BahiaBrazil

BACKGROUND Sweet’s syndrome,also known as acute febrile neutrophilic dermatosis,is a rare skin disorder that may be associated with *** SUMMARY A 58-year-old female presented with a cholestatic syndrome and significant weight loss three months before *** months earlier,she had abruptly developed skin lesions with erythematous papules that evolved to erythematous *** evaluation and laboratory tests confirmed hepatic *** lesions histopathological findings showed neutrophilic dermatosis,massive edema,fibrin,necrosis,and *** results,in association with the macroscopic aspects of the findings,led to the diagnosis of paraneoplastic Sweet’s syndrome due to *** staging was consistent with an advanced tumor without a cure perspective,we opted to perform percutaneous biliary drainage,and subsequently,palliative ***,after a few weeks,the patient *** In conclusion,the diagnosis of the underlying disease-causing Sweet’s syndrome must be accurate,and patients need to be followed-up,as neoplasia such as cholangiocarcinoma may be a later manifestation.

关键词： Cholangiocarcinoma Paraneoplastic syndrome Sweet syndrome Case report Bullous lesions Cholestasis

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Therapeutic and prophylactic thalidomide in TNBS-induced colitis: Synergistic effects on TNF-α, IL-12 and VEGF production

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World Journal of Gastroenterology 2007年第15期13卷 2166-2173页

作者： Ana Teresa carvalho Heitor Souza Antonio Jose carneiro Morgana Castelo-Branco Kalil Madi Alberto Schanaider Flavia Silva Fernando Antonio Pereira Júnior Márcia G Pereira Cláudio Tortori Ilana Dines Jane carvalho Eduardo Rocha Celeste Elia departamento de Clínica Médica Hospital Universitário Clementino Fraga Filho Brazil departamento de Histologia e Embriologia Laboratório de Imunologia Celular Instituto de Ci(e|^)ncias BiomédicasUniversidade Federal do Rio de Janeiro21941-590Brazil Laboratório Multidisciplinar de Pesquisa Anatomia Patológica Hospital Universitário Clementino Fraga FilhoBrazil e Cirurgia Experimental Hospital Universitário Clementino Fraga Filho Brazil

AIM： To evaluated the therapeutic and prophylactic effect of thalidomide on 2, 4, 6-trinitrobenzene sulfonic acid （TNBS）-induced colitis. Thalidomide has been reported to downregulate the expression of tumor necrosis factor α （TNF-α）, IL-12, and vascular endothelial growth factor （VEGF）, hallmarks of intestinal inflammation in Crohn＇s disease （CD）. METHODS： Male Wistar rats were divided in five groups of ten animals each. Four groups received a rectal infusion of TNBS in ethanol. The first group was sacrificed 7 d after colitis induction. The second and third groups received either thalidomide or placebo by gavage and were sacrificed at 14 d. The fourth group received thalidomide 6 h before TNBS administration, and was sacrificed 7 d after induction. The fifth group acted as the control group and colitis was not induced. Histological inflammatory scores of the colon were performed and lamina propria CD4＋ T cells, macrophages, and VEGF＋ cells were detected by immunohistochemistry. TNF-α and IL-12 were quantified in the supernatant of organ cultures by ELISA. RESULTS： Significant reduction in the inflammatory score and in the percentage of VEGF＋ cells was observed in the group treated with thalidomide compared with animals not treated with thalidomide. Both TNF-α and IL-12 levels were significantly reduced among TNBS induced colitis animals treated with thalidomide compared with animals that did not receive thalidomide. TNF-α levels were also significantly reduced among the animals receiving thalidomide prophylaxis compared with untreated animals with TNBS-induced colitis. Intestinal levels of TNF-α and IL-12 were significantly correlated with the inflammatory score and the number of VEGF＋ cells. CONCLUSION： Thalidomide significantly attenuates TNBS-induced colitis by inhibiting the intestinal production of TNF-α, IL-12, and VEGF. This effect may support the use of thalidomide as an alternate approach in selected patients with CD.

关键词： Thalidomide Experimental colitis Inflammatory bowel disease Tumor necrosis factor α IL-12 Vascular endothelial growth factor

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Thiopurine-methyltransferase variants in inflammatory bowel disease:Prevalence and toxicity in Brazilian patients

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World Journal of Gastroenterology 2014年第12期20卷 3327-3334页

作者： Ana Teresa P carvalho Barbara C Esberard Renata S B Fróes Davy C M Rapozo Ana B Grinman Tatiana A Simo Juliana C V C Santos Antonio José V carneiro Luis Felipe Ribeiro-Pinto Heitor S P de Souza Disciplina de Gastroenterologia e Endoscopia Digestiva Universidade do Estado do Rio de Janeiro Programa de Carcinogênese Molecular Instituto Nacional de Cancer Laboratório de Toxicologia e Biologia Molecular Universidade do Estado do Rio de Janeiro Servi?o de Gastroenterologia Departamento de Clínica MédicaUniversidade Federal do Rio de Janeiro

AIM: To analyze the prevalence of thiopurine-methyltransferase (TPMT) genotypes and their association with drug toxicity in inflammatory bowel disease (IBD) patients from southeastern Brazil.

关键词： Inflammatory bowel disease Thiopurine-methyl-transferase Azathioprine Drug toxicity Pancreatitis

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Proton nuclear magnetic resonance-based metabonomic models for non-invasive diagnosis of liver fibrosis in chronic hepatitis C:Optimizing the classification of intermediate fibrosis

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World Journal of Hepatology 2018年第1期10卷 105-115页

作者： Andrea Dória Batista Carlos Jonnatan Pimentel Barros Tássia Brena Barroso carneiro Costa Michele Maria Goncalves de Godoy Ronaldo Dionísio Silva Joelma carvalho Santos Mariana Montenegro de Melo Lira Norma ThoméJucá Edmundo Pessoa de Almeida Lopes Ricardo Oliveira Silva Postgraduate Program in Tropical Medicine Center for Health SciencesUniversidade Federal de PernambucoRecifePernambuco 50670-901Brazil department of Gastroenterology and Hepatology Hospital das ClínicasUniversidade Federal de PernambucoRecifePernambuco 50670-901Brazil department of Fundamental Chemistry Center for Exact and Nature SciencesUniversidade Federal de PernambucoRecifePernambuco 50670-901Brazil Intensive Care Unit Hospital das ClínicasUniversidade Federal de PernambucoRecifePernambuco 50670-901Brazil department of Pathology Hospital das ClínicasUniversidade Federal de PernambucoRecifePernambuco 50670-901Brazi

AIM To develop metabonomic models(MMs), using 1 H nuclear magnetic resonance(NMR) spectra of serum, to predict significant liver fibrosis(SF: Metavir ≥ F2), advanced liver fibrosis(AF: METAVIR ≥ F3) and cirrhosis(C: METAVIR = F4 or clinical cirrhosis) in chronic hepatitis C(CHC) patients. Additionally, to compare the accuracy of the MMs with the aspartate aminotransferase to platelet ratio index(APRI) and fibrosis index based on four factors(FIB-4). METHODS Sixty-nine patients who had undergone biopsy in the previous 12 mo or had clinical cirrhosis were included. The presence of any other liver disease was a criterion for exclusion. The MMs, constructed using partial least squares discriminant analysis and linear discriminant analysis formalisms, were tested by cross-validation, considering SF, AF and C. RESULTS Results showed that forty-two patients(61%) presented SF, 28(40%) AF and 18(26%) C. The MMs showed sensitivity and specificity of 97.6% and 92.6% to predict SF; 96.4% and 95.1% to predict AF; and 100% and 98.0% to predict C. Besides that, the MMs correctly classified all 27(39.7%) and 25(38.8%) patients with intermediate values of APRI and FIB-4, respectively. CONCLUSION The metabonomic strategy performed excellently in predicting significant and advanced liver fibrosis in CHC patients, including those in the gray zone of APRI and FIB-4, which may contribute to reducing the need for these patients to undergo liver biopsy.

关键词： Metabolomics Nuclear magnetic resonance spectroscopy Chronic hepatitis C Liver fibrosis Surrogate markers

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Measuring the density of the fissula antefenestram and the section of the basal turn of the cochlea:Are they useful in the radiological diagnosis of otosclerosis?

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Journal of Otology 2022年第2期17卷 84-89页

作者： Lucas Resende Lucinda Mangia Gabriel Lucca de Oliveira Salvador Bettina carvalho Rogerio Hamerschmidt department of Otolaryngology Head and Neck SurgeryHospital de Clínicas da Universidade Federal do ParanaGeneral Carneiro st181CuritibaBrazil department of Imaging and Radiology Head and Neck SurgeryHospital de Clínicas da Universidade Federal do ParanaGeneral Carneiro st181CuritibaBrazil

Introduction:The role of objective parameters in terms of improvement of the accuracy of highresolution computed tomography(HRCT)of the temporal bone in the diagnosis of otosclerosis remains ***:To investigate the relationship between the density of the fissula antefenestram(FAF)and of the width of the transversal section of the basal turn of the cochlea(BTC),and the diagnosis of ***:This is a retrospective study in which preoperative HRCT data from ears of patients submitted to stapedotomy due to otosclerosis(case group)were *** the control group,normal hearing ears having undergone HRCT for other purposes were *** and control HRCT images were objectively assessed by an experienced blinded *** this evaluation,measurements of the relative radiological density of the FAF and of the transversal section of the BTC were *** results were compared between the ***,a receiver operating characteristic curve was created and the area under the curve(AUC)was calculated for each *** level was set ***:40 ears were included in each *** ears presented reduced values for the relative radiological density on the FAF(p-valuedensity on the FAF and narrower *** relative density of the FAF also shows a great diagnostic power in the context of this disease.

关键词： Otosclerosis Computed tomography Imaging diagnosis

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Large primary hepatic gastrinoma in young patient treated with trisegmentectomy: A case report and review of the literature

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World Journal of Hepatology 2018年第7期10卷 517-522页

作者： Leonardo Zumerkorn Pipek Yuri Justi Jardim Gustavo Heluani Antunes de Mesquita Fernanda Nii Kayo Augusto de Almeida Medeiros Bárbara Justo carvalho Diego Ramos Martines Leandro Ryuchi Iuamoto Daniel Reis Waisberg Luiz Augusto carneiro D'Albuquerque Alberto Meyer Wellington Andraus Faculdade de Medicina FMUSP Universidade de Sa?o Paulo Program in Global Surgery and Social Change Department of Global Health and Social Medicine Harvard Medical School departamento de Gastroenterologia Hospital das Clinicas HCFMUSP Faculdade de Medicina Universidade de Sao Paulo

Primary hepatic gastrinoma is a rare disease, with fewer than 40 cases reported in the medical literature. Because it is located in an organ in which metastases are common, its diagnosis is difficult. We report a case of a 19 years old male patient with a history of gastric ulcers since the age of nine. Following gastric surgery, an antrectomy and a vagotomy, there was some alleviation of symptoms. Subsequently, the patient reported various intermittent episodes of diarrhea, diffuse abdominal pain, and vomiting. The patient underwent tomography, which revealed the presence of a hepatic mass measuring 19.5 cm × 12.5 cm × 17 cm. Primary hepatic gastrinoma was diagnosed based on laboratory examinations that indicated hypergastrinemia and a positron emission tomography/magnetic resonance study with somatostatin analogue that confirmed the liver as the primary site. After hepatic trisegmentectomy(Ⅱ, Ⅲ, Ⅳ, Ⅴ, Ⅷ), the patient's symptoms improved. The case is notable for the presence of a rare tumor with uncommon dimensions.

关键词： Gastrinoma Primary hepatic gastrinoma Zollinger-Ellison syndrome Hepatic trisegmentectomy Gastric surgery

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Change in neoadjuvant chemotherapy could alter the prognosis of patients with pancreatic adenocarcinoma: A case report

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World Journal of Clinical Cases 2021年第14期9卷 3418-3423页

作者： Alberto Meyer Bárbara J carvalho Kayo AA Medeiros Leonardo Z Pipek Fernanda S Nascimento Milena O Suzuki João VT Munhoz Leandro R Iuamoto Luiz A carneiro-D'Alburquerque Wellington Andraus Gastroenterologia Hospital das Clínicas HCFMUSPFaculdade de MedicinaUniversidade de São PauloSão Paulo 01426-010Brazil Gastroenterologia Faculdade de Medicinada Universidade de São PauloSão Paulo 05403-000Brazil Orthopaedics and Traumatology Faculdade de Medicinada Universidade de São PauloSão Paulo 05403-000Brazil

BACKGROUND Neoadjuvant treatment has become a standard of care for borderline or locally advanced pancreatic cancer and is increasingly considered even for up-front resectable *** aim of this article is to present the case of a 62-year-old patient with locally advanced pancreatic adenocarcinoma who was successfully treated with gemcitabine plus nab-paclitaxel after the failure of the first line *** SUMMARY Computerized tomography scan and magnetic resonance imaging demonstrated a nodular lesion of ill-defined limits in the body of the pancreas,measuring approximately 4.2 cm×2.7 cm,with an infiltrative *** tumor had contact with the superior mesenteric vein,splenomesenteric junction and the proximal segment of the splenic artery,causing focal reduction of its *** to vascular involvement,neoadjuvant chemotherapy treatment with eight cycles of“folinic acid,5-fluorouracil,irinotecan and oxa-liplatine”(FOLFIRINOX)were *** the end of the cycles,surgery was performed,but the procedure was interrupted due to finding of lesions suspected of *** plus nab-paclitaxel was then successfully used for neoadjuvant treatment with subsequent R0 surgical *** Gemcitabine plus nab-paclitaxel may be effective as an alternative regimen when FOLFIRINOX fails as the first line of treatment,suggesting the need for further studies to identify which patients would benefit from each type of therapeutic approach.

关键词： Neoadjuvant chemotherapy Pancreatic cancer Resectable pancreatic cancer Borderline resectable Neoadjuvant Pancreas Case report

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