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High-efficiencygenomeediting in plants mediated by a Cas9 gene containing multiple introns

Plant Communications 2021年第2期2卷 63-77页

作者： Ramona Grützner Patrick Martin claudia horn Samuel Mortensen Erin J.Cram Carolyn W.T.Lee-Parsons Johannes Stuttmann Sylvestre Marillonnet Department of Cell and Metabolic Biology Leibniz Institute of Plant BiochemistryWeinberg 306120 Halle(Saale)Germany Institute for Biology Department of Plant GeneticsMartin Luther University Halle-WittenbergWeinbergweg 1006120 Halle(Saale)Germany Department of Biology Northeastern UniversityBostonMAUSA Department of Chemistry and Chemical Biology Northeastern UniversityBostonMAUSA Department of Chemical Engineering Northeastern UniversityBostonMAUSA

The recent discovery of the mode of action of the CRISPR/Cas9 systemhas provided biologists with a useful tool for generating site-specific mutations in genes of *** plants,site-targeted mutations are usually obtained by the stable transformation of a Cas9 expression construct into the plant *** efficiency of introducing mutations in genes of interest can vary considerably depending on the specific features of the constructs,including the source and nature of the promoters and terminators used for the expression of the Cas9 gene and the guide RNA,and the sequence of the Cas9 nuclease *** optimize the efficiency of the Cas9 nuclease in generating mutations in target genes in Arabidopsis thaliana,we investigated several features of its nucleotide and/or amino acid sequence,including the codon usage,the number of nuclear localization signals(NLSs),and the presence or absence of *** found that the Cas9 gene codon usage had some effect on its activity and that two NLSs worked better than ***,the highest efficiency of the constructs was achieved by the addition of 13 introns into the Cas9 coding sequence,which dramatically improved the editing efficiency of the *** of the primary transformants obtained with a Cas9 gene lacking introns displayed a knockout mutant phenotype,whereas between 70%and 100%of the primary transformants generated with the intronized Cas9 gene displayed mutant *** intronized Cas9 gene was also found to be effective in other plants such as Nicotiana benthamiana and Catharanthus roseus.

关键词： CRISPR Cas9 targeted mutagenesis gene targeting

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Olfactory receptors in neural regeneration in the central nervous system

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Neural Regeneration Research 2025年第9期20卷 2480-2494页

作者： Rafael Franco claudia Garrigós Toni Capó Joan Serrano-Marín Rafael Rivas-Santisteban Jaume Lillo Molecular Neurobiology Laboratory Department of Biochemistry and Molecular BiomedicineFacultat de BiologiaUniversitat de BarcelonaBarcelonaSpain CiberNed Network Center for Biomedical Research in Neurodegenerative Diseases Spanish National Health Institute Carlos ⅢMadridSpain School of Chemistry Universitat de BarcelonaBarcelonaSpain Department of Biochemistry and Physiology School of Pharmacy and Food SciencesUniversitat de BarcelonaBarcelonaSpain Laboratory of Computational Medicine Biostatistics UnitFaculty of MedicineAutonomous University of BarcelonaCampus BellaterraBarcelonaSpain

Olfactory receptors are crucial for detecting odors and play a vital role in our sense of smell,influencing behaviors from food choices to emotional *** receptors also contribute to our perception of flavor and have potential applications in medical diagnostics and environmental *** ability of the olfactory system to regenerate its sensory neurons provides a unique model to study neural regeneration,a phenomenon largely absent in the central nervous *** gained from how olfactory neurons continuously replace themselves and reestablish functional connections can provide strategies to promote similar regenerative processes in the central nervous system,where damage often results in permanent *** the molecular and cellular mechanisms underpinning olfactory neuron regeneration could pave the way for developing therapeutic approaches to treat spinal co rd injuries and neurodegenerative diseases like Alzheimer's *** ctory receptors are found in almost any cell of eve ry orga n/tissue of the mammalian *** ectopic expression provides insights into the chemical structures that can activate olfactory *** addition to odors,olfactory receptors in ectopic expression may respond to endogenous compounds and molecules produced by mucosal colonizing *** analysis of the function of olfactory receptors in ectopic expression provides valuable information on the signaling pathway engaged upon receptor activation and the receptor's role in proliferation and cell differentiation *** review explo res the ectopic expression of olfa ctory receptors and the role they may play in neural regeneration within the central nervous system,with particular attention to compounds that can activate these receptors to initiate regenerative *** suggests that olfactory receptors could serve as potential therapeutic targets for enhancing neural repair and recovery following central nervous syste

关键词： adenosine receptors adrenergic receptors ectopic expression G proteincoupled receptors glia neurons

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Crystal structure evolution of complex metal aluminum hydrides upon hydrogen release

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Journal of Energy Chemistry 2020年第3期29卷 133-143页

作者： claudia Weidenthaler Max-Planck-Institut für Kohlenforschung 45470 Mülheim an der RuhrGermany

Complex aluminum hydrides have been widely studied as potential hydrogen storage materials but also,for some time now, for electrochemical applications. This review summarizes the crystal structures of alkali and alkaline earth aluminum hydrides and correlates structure properties with physical and chemical properties of the hydride compounds. The crystal structures of the alkali metal aluminum hydrides change significantly during the stepwise dehydrogenation. The general pathway follows a transformation of structures built of isolated [AlH4]- tetrahedra to structures built of isolated [Al H6]3- *** crystal structure relations in the group of alkaline earth metal aluminum hydrides are much more complicated than those of the alkali metal aluminum hydrides. The structures of the alkaline earth metal aluminum hydrides consist of isolated tetrahedra but the intermediate structures exhibit chains of cornershared octahedra. The coordination numbers within the alkali metal group increase with cation sizes which goes along with an increase of the decomposition temperatures of the primary hydrides. Alkaline earth metal hydrides have higher coordination numbers but decompose at slightly lower temperatures than their alkali metal counterparts. The decomposition pathways of alkaline metal aluminum hydrides have not been studied in all cases and require future research.

关键词： Complex aluminum hydrides Hydrogen storage Crystal structure

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Soil Wettability as Affected by Soil Characteristics and Land Use

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Pedosphere 2010年第1期20卷 43-54页

作者： R. horn Institute of Plant Nutrition and Soil Science Christian-Albrechts-University zu Kiel

Depth distribution of soil wettability and its correlations with vegetation type, soil texture, and pH were investigated under various land use (cropland, grassland, and forestland) and soil management systems. Wettability was evaluated by contact angle with the Wilhelmy plate method. Water repellency was likely to be present under permanently vegetated land, but less common on tilled agricultural land. It was mostly prevalent in the topsoil, especially in coarse-textured soils, and decreased in the subsoil. However, the depth dependency of wettability could not be derived from the investigated wide range of soils. The correlation and multiple regression analysis revealed that the wettability in repellent soils was affected more by soil organic carbon (SOC) than by soil texture and pH, whereas in wettable soils, soil texture and pH were more effective than SOC. Furthermore, the quality of SOC seemed to be more important in determining wettability than its quantity, as proofed by stronger hydrophobicity under coniferous than under deciduous forestland. Soil management had a minor effect on wettability if conventional and conservation tillage or different grazing intensities were considered.

关键词： soil management soil organic carbon soil pH soil texture

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HOMOGENIZATION RESULTS FOR ENZYME CATALYZED REACTIONS THROUGH POROUS MEDIA

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Acta Mathematica Scientia 2009年第1期29卷 74-82页

作者： claudia Timofte Department of Mathematics Faculty of Physics University of BucharestP.O. Box MG-11

The aim of this article is to study the effective behavior of the solution of a nonlinear problem arising in the modelling of enzyme catalyzed reactions through the exterior of a domain containing periodically distributed reactive solid obstacles,with period ε.The asymptotic behavior of the solution of such a problem is governed by a new elliptic boundary-value problem,with an extra zero-order term that captures the effect of the enzymatic reactions.

关键词： Homogenization enzyme reactive flows Michaelis-Menten mechanism

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Biochar-Induced Changes in Soil Resilience:Effects of Soil Texture and Biochar Dosage

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Pedosphere 2017年第2期27卷 236-247页

作者： Ayodele Ebenezer AJAYI Rainer horn Department of Agricultural and Environmental Engineering Federal University of Technology 340252 Akure Ondo State (Nigeria) Institute for Plant Nutrition and Soil Science CAU Kiel 24118 Kiel (Germany)

Biochars are, amongst other available amendment materials, considered as an attractive tool in agriculture for carbon sequestration and improvement of soil functions. The latter is widely discussed as a consequence of improved physical quality of the amended ***, the mechanisms for this improvement are still poorly understood. This study investigated the effect of woodchip biochar amendment on micro-structural development, micro-and macro-structural stability, and resilience of two differently textured soils,fine sand(FS) and sandy loam(SL). Test substrates were prepared by adding 50 or 100 g kg^(-1) biochar to FS or SL. Total porosity and plant available water were significantly increased in both soils. Moreover, compressive strength of the aggregates was significantly decreased when biochar amount was doubled. Mechanical resilience of the aggregates at both micro-and macro-scale was improved in the biochar-amended soils, impacting the cohesion and compressive behavior. A combination of these effects will result in an improved pore structure and aeration. Consequently, the physicochemical environment for plants and microbes is improved. Furthermore, the improved stability properties will result in better capacity of the biochar-amended soil to recover from the myriad of mechanical stresses imposed under arable systems, including vehicle traffic, to the weight of overburden soil. However, it was noted that doubling the amendment rate did not in any case offer any remarkable additional improvement in these properties, suggesting a further need to investigate the optimal amendment rate.

关键词： aggregate stability amendment material compressive strength rheometry shear properties total porosity

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Adult mammalian neurogenesis and motivated behaviors

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Integrative Zoology 2018年第6期13卷 655-672页

作者： claudia JORGENSEN Behavioral Science Department Utah Valley UniversityOremUtahUSA

Adult neurogenesis continues to captivate the curiosity of the scientific community;and researchers seem to have a particular interest in identifying the functional implications of such *** the majority of research focuses on the association between adult neurogenesis and learning and memory(including spatial learning associated with hippocampal neurogenesis and olfactory discrimination associated with neurogenesis in the olfactory system),the following review will explore the link to motivated *** particular,goal-directed behaviors such as sociosexual,parental,aggressive,as well as depression-and anxiety-like behaviors and their reciprocal association to adult neurogenesis will be *** review will detail research in humans and other mammalian ***,the potential mechanisms underlying these neurogenic alterations will be ***,the review will conclude with a discussion on the functional significance of these newly generated cells in mediating goal-directed behaviors.

关键词： adult neurogenesis aggression anxiety depression reproduction

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Experimental and FEM based investigation of the influence of the deposition temperature on the mechanical properties of SiC coatings

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Journal of Advanced Ceramics 2021年第1期10卷 139-151页

作者： Thomas SCHLECH Siegfried horn Charles WIJAYAWARDHANA Arash RASHIDI SGL Carbon GmbH Werner-von-Siemens-Strasse 1886405 MeitingenGermany Experimental PhysicsⅡ Institute of PhysicsUniversity of Augsburg86135 AugsburgGermany SGL Carbon GmbH Drachenburgstrasse 153170 BonnGermany

Scanning electron microscopy shows that the microstructure,in particular the overall grain size,of chemical vapor deposited silicon carbide coatings depends on the deposition ***,the influence of the microstructure on the mechanical properties of such coatings is not well described in *** investigate the influence of the deposition temperature on the mechanical properties of the coating,nanoindentation is used in this *** the measurement results of nanoindentation can be affected by the substrate material,the contribution of the substrate material is taken into account utilizing a finite element *** model is then employed to generate information about elastic and plastic properties of the coating by inverse *** evaluate the fracture toughness of the coating,the generated material model is used in a cohesive-zone based formulation of the fracture process during indentation at higher *** results of this model allow determining the fracture toughness of silicon carbide coatings deposited at different temperatures.

关键词： nanoindentation finite element analysis coatings ceramics fracture mechanics

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Improving Scalability of Cloud Monitoring Through PCA-Based Clustering of Virtual Machines

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Journal of Computer Science & Technology 2014年第1期29卷 38-52页

作者： claudia Canali Riccardo Lancellotti IEEE Department of Information Engineering University of Modena and Reggio Emilia ACM

Cloud computing has recently emerged as a leading paradigm to allow customers to run their applications in virtualized large-scale data centers. Existing solutions for monitoring and management of these infrastructures consider virtual machines （VMs） as independent entities with their own characteristics. However, these approaches suffer from scalability issues due to the increasing number of VMs in modern cloud data centers. We claim that scalability issues can bc addressed by leveraging the similarity among VMs behavior in terms of resource usage patterns. In this paper we propose an automated methodology to cluster VMs starting from the usage of multiple resources, assuming no knowledge of the services executed on them. The innovative contribution of the proposed methodology is the use of the statistical technique known as principal component analysis （PCA） to automatically select the most relevant information to cluster similar VMs. We apply the methodology to two case studies, a virtualized testbed and a real enterprise data center. In both case studies, the automatic data selection based on PCA allows us to achieve high performance, with a percentage of correctly clustered VMs between 80% and 100% even for short time series （1 day） of monitored data. Furthermore, we estimate the potential reduction in the amount of collected data to demonstrate how our proposal may address the scalability issues related to monitoring and management in cloud computing data centers.

关键词： cloud computing resource monitoring principal component analysis k-means clustering

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Tuning two-dimensional electron and hole gases at LaInO_(3)/BaSnO_(3) interfaces by polar distortions,termination,and thickness

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npj Computational Materials 2021年第1期7卷 1584-1591页

作者： Wahib Aggoune claudia Draxl Institut für Physik and IRIS Adlershof Humboldt-Universität zu Berlin12489 BerlinGermany

Two-dimensional electron gases(2DEG),arising due to quantum confinement at interfaces between transparent conducting oxides,have received tremendous attention in view of electronic ***,we explore the potential of interfaces formed by two lattice-matched wide-gap oxides of emerging interest,i.e.,the polar,orthorhombic perovskite LaInO_(3)and the nonpolar,cubic perovskite BaSnO_(3),employing first-principles *** find that the polar discontinuity at the interface is mainly compensated by electronic relaxation through charge transfer from the LaInO_(3)to the BaSnO_(3)*** leads to the formation of a 2DEG hosted by the highly dispersive Sn-s-derived conduction band and a 2D hole gas of O-p character,strongly localized inside LaInO_(3).We rationalize how polar distortions,termination,thickness,and dimensionality of the system(periodic or non-periodic)can be exploited in view of tailoring the 2DEG characteristics,and why this material is superior to the most studied prototype LaAlO_(3)/SrTiO_(3).

关键词： termination gases distortion

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