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The Crop Journal 2024年第3期12卷 866-879页

作者： Haozhe Tan Binghui Tang Mengling Sun Qiulu Yin Yizan Ma Jianying Li Pengcheng Wang Zhonghua Li Guannan Zhao Maojun Wang Xianlong Zhang chunyuan you Lili Tu National Key Laboratory of Crop Genetic Improvement Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhan 430070HubeiChina Cotton Research Institute Shihezi Academy of Agriculture ScienceShihezi 832000XinjiangChina

Cotton fiber is one of the main raw materials for the textile *** recent years,many cotton fiber quality QTL have been identified,but few were applied in *** this study,a genome wide association study(GWAS)of fiber-quality traits in 265 upland cotton breeding intermediate lines(GhBreeding),combined with genome-wide selective sweep analysis(GSSA)and genomic selection(GS),revealed 25 *** of these QTL were ignored by only using *** CRISPR/Cas9 mutants of GhMYB_D13 had shorter fiber,which indicates the credibility of QTL to a certain *** these QTL were verified in other cotton natural populations,5 stable QTL were found having broad potential for application in ***,among these 5 stable QTL,superior genotypes of 4 showed an enrichment in most improved new varieties widely cultivated *** findings provide insights for how to identify more QTL through combined multiple genomic analysis to apply in breeding.

关键词： Cotton fiber quality breeding GWAS Genome-wide selective sweep analysis Genomic selection InDel markers

Identification of SSR markers linked to the abscission of cotton boll traits and mining germplasm in Cotton

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Journal of Cotton Research 2024年第2期7卷 177-187页

作者： SHUI Guangling LIN Hairong MA Xiaomei ZHU Bo HAN Peng AINI Nurimanguli GUO Chunping WU Yuanlong PAN Zhenyuan you chunyuan SONG Guoli NIE Xinhui Key Laboratory of Oasis Ecology Agricultural of Xinjiang Bingtuan Agricultural CollegeShihezi UniversityShiheziXinjiang 832003China Cotton Institute Xinjiang Academy of Agriculture and Reclamation ScienceShiheziXinjiang 832000China Agricultural Science Research Institute of the 5th Division of Xinjiang Production and Construction Corps ShuangheXinjiang 833408China Modern Agricultural College Kashi UniversityKashiXinjiang 844000China National Key Laboratory of Crop Genetic Improvement College of Plant Sciences&TechnologyHuazhong Agricultural UniversityWuhanHubei 430070China National Key Laboratory of Cotton Bio‑Breeding and Integrated Utilization Institute of Cotton ResearchChinese Academy of Agricultural SciencesAnyangHenan 455000China

Background Cotton is an economically important *** is crucial to find an effective method to improve cotton yield,and one approach is to decrease the abscission of cotton bolls and ***,the lack of knowledge of the genetic and molecular mechanisms underlying cotton boll abscission traits has hindered genetic *** Pearson’s correlation analysis revealed a significant positive correlation between boll abscission rates 1(AR1)and boll abscission rates 2(AR2).A genome-wide association study was conducted on 145 loci that exhibited high polymorphism and were uniformly distributed across 26 chromosomes(pair).The study revealed 18,46,and 62 markers that were significantly associated with boll abscission,fiber quality,and yield traits(P<0.05),explaining 1.75%–7.13%,1.16%–9.58%,and 1.40%–5.44%of the phenotypic variation,***,the marker MON_SHIN-1584b was associated with the cotton boll abscission trait,whereas MON_CGR5732a was associated with cotton boll abscission and fiber quality *** of the marker loci identified in this study had been previously *** on phenotypic effects,six typical cultivars with elite alleles related to cotton boll abscission,fiber quality,and yield traits were *** cultivars hold great promise for widespread utilization in breeding *** These results lay the foundation for understanding the molecular regulatory mechanism of cotton boll abscission and provide data for the future improvement of cotton breeding.

关键词： SSR Genome wide association studies Abscission Favorable alleles Cotton Genetic improvement

Cotton ethylene response factor Gh ERF91 is involved in the defense against Verticillium dahliae

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Journal of Integrative Agriculture 2024年第10期23卷 3328-3342页

作者： Nurimanguli Aini Yuanlong Wu Zhenyuan Pan Yizan Ma Qiushuang An Guangling Shui Panxia Shao Dingyi Yang Hairong Lin Binghui Tang Xin Wei chunyuan you Longfu Zhu Dawei Zhang Zhongxu Lin Xinhui Nie Key Laboratory of Oasis Eco-agriculture Xinjiang Production and Construction Group/Agricultural CollegeShihezi UniversityShihezi 832003China National Key Laboratory of Crop Genetic Improvement/College of Plant Sciences&Technology Huazhong AgriculturalUniversityWuhan 430070China Cotton Research Institute Shihezi Academy of Agricultural ScienceShihezi 832011China Institute of Economic Crops Xinjiang Academy of Agricultural SciencesUrumqi 830091China

Verticillium dahliae causes significant losses in cotton *** reveal the mechanism of the defense response to *** in cotton,transcriptomic analyses were performed using cotton cultivars M138(***-resistant)and P2(***-susceptible).The results revealed 11,076 and 6,640 differentially expressed genes(DEGs)in response to ***,*** weighted gene co-expression network analysis of 4,633 transcription factors(TFs)indicated a“MEblue”module containing 654 TFs that strongly correlate with resistance to *** these TFs,the ethylene response factor Ghi_A05G10166(GhERF91)was identified as a putative hub gene with a defense response against ***.A virus-induced gene silencing assay and exogenous application of ethephon showed that GhERF91 is activated by ethylene and positively regulates the response to *** exposure in *** study provides fundamental transcriptome data and a putative causal gene(GhERF91)associated with resistance to ***,as well as genetic resources for breeding ***-resistant cotton.

关键词： cotton Verticillium wilt RNA-sequencing GhERF91 virus-induced gene silencing

Cotton ethylene response factor Gh ERF91 is involved in the defense against Verticillium dahliae

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Journal of Integrative Agriculture 2024年第10期 3328-3342页

作者： Nurimanguli Aini Yuanlong Wu Zhenyuan Pan Yizan Ma Qiushuang An Guangling Shui Panxia Shao Dingyi Yang Hairong Lin Binghui Tang Xin Wei chunyuan you Longfu Zhu Dawei Zhang Zhongxu Lin Xinhui Nie Key Laboratory of Oasis Eco-agriculture Xinjiang Production and Construction Group/Agricultural College Shihezi University National Key Laboratory of Crop Genetic Improvement/College of Plant Sciences & Technology Huazhong Agricultural University Cotton Research Institute Shihezi Academy of Agricultural Science Institute of Economic Crops Xinjiang Academy of Agricultural Sciences

Verticillium dahliae causes significant losses in cotton production. To reveal the mechanism of the defense response to V. dahliae in cotton, transcriptomic analyses were performed using cotton cultivars M138(V. dahliae-resistant)and P2(V. dahliae-susceptible). The results revealed 11,076 and 6,640 differentially expressed genes(DEGs)in response to V. dahliae, respectively. The weighted gene co-expression network analysis of 4,633 transcription factors(TFs) indicated a “MEblue” module containing 654 TFs that strongly correlate with resistance to V. *** these TFs, the ethylene response factor Ghi＿A05G10166(GhERF91) was identified as a putative hub gene with a defense response against V. dahliae. A virus-induced gene silencing assay and exogenous application of ethephon showed that GhERF91 is activated by ethylene and positively regulates the response to V. dahliae exposure in cotton. This study provides fundamental transcriptome data and a putative causal gene(GhERF91)associated with resistance to V. dahliae, as well as genetic resources for breeding V. dahliae-resistant cotton.

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Morphological and cytological assessments reveal pollen degradation causes pollen abortion in cotton cytoplasmic male sterility lines

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Journal of Cotton Research 2024年第03期 266-276页

作者： PEI Qingyu LIU Jinshan GUO Chunping MA Xiaomei LIU Xiaoyan you chunyuan LIN Hairong LI Zhibo ZHAO Ruihai ZHU Bo WU Yuanlong PAN Zhenyuan NIE Xinhui Key Laboratory of Oasis Ecology Agricultural of Xinjiang Production and Construction Corps Agricultural College Shihezi University Seed Management Station of Xinjiang Production and Construction Corps Cotton Institute Xinjiang Academy of Agricultural and Reclamation Science Xinjiang Jinbo Seed Industry Co. Ltd National Key Laboratory of Crop Genetic Improvement College of Plant Sciences and Technology Huazhong Agricultural University Cotton Research Institute Shihezi Academy of Agriculture Science Agricultural Science Research Institute of the 5th Division of Xinjiang Production and Construction Corps

Background Understanding the mechanism of male sterility is crucial for producing hybrid seeds and developing sterile germplasm resources. However, only a few cytoplasmic male sterility（CMS） lines of cotton have been produced due to several challenges, like inadequate variation of agronomic traits, incomplete sterility, weak resilience of restorer lines, and difficulty in combining strong dominance. Therefore, the morphological and cytological identification of CMS in cotton will facilitate hybrid *** Two F2segregating populations of cotton were constructed from cytoplasmic male sterile lines（HaA and 01A, maternal） and restorer lines（HaR and 26R, paternal）. Genetic analysis of these populations revealed a segregation ratio of 3:1 for fertile to sterile plants. Phenotypic analysis indicated no significant differences in traits of flower bud development between sterile and fertile plants. However, sterile plants exhibited smaller floral organs, shortened filament lengths, and anther atrophy on the flowering day in comparison with the fertile plants. When performed scanning electron microscopy（SEM）, the two F2populations revealed morphological variations in the anther epidermis. Cellular analysis showed no significant differences in pollen development before pollen maturation. Interestingly, between the pollen maturation and flowering stages, the tapetum layer of sterile plants degenerated prematurely, resulting in abnormal pollen grains and gradual pollen *** The results of this study suggest that fertility-restoring genes are controlled by a single dominant gene. Sterile plants exhibit distinctive floral morphology, which is characterized by stamen atrophy and abnormal anthers. Pollen abortion occurs between pollen maturity and flowering, indicating that premature tapetum degradation may be the primary cause of pollen abortion. Overall, our study provides a theoretical basis for utilizing CMS in hybrid breeding and in-depth investigati

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Correction:Identification of SSR markers linked to the abscission of cotton boll traits and mining germplasm in Cotton

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Journal of Cotton Research 2024年第2期7卷 219-222页

作者： SHUI Guangling LIN Hairong MA Xiaomei ZHU Bo HAN Peng AINI Nurimanguli GUO Chunping WU Yuanlong PAN Zhenyuan you chunyuan SONG Guoli NIE Xinhui Key Laboratory of Oasis Ecology Agricultural of Xinjiang Bingtuan Agricultural CollegeShihezi UniversityShiheziXinjiang 832003China Cotton Institute Xinjiang Academy of Agriculture and Reclamation ScienceShiheziXinjiang 832000China Agricultural Science Research Institute of the 5 Division of Xinjiang Production and Construction CorpsShuangheXinjiang 833408China Modern Agricultural College Kashi UniversityKashiXinjiang 844000China National Key Laboratory of Crop Genetic Improvement College of Plant Sciences&TechnologyHuazhong Agricultural UniversityWuhanHubei 430070China National Key Laboratory of Cotton Bio‑Breeding and Integrated Utilization Institute of Cotton ResearchChinese Academy of Agricultural SciencesAnyangHenan 455000China

Correction:J Cotton Res 7,20(2024)https://***/10.1186/s42397-024-00180-3 Following publication of the original article(Shui et al.2024),the author found 5 errors in the published *** of the author’s name has been corrected from Gou Chunping to Guo *** reference(Zhao SQ.2016)in Table 2 has been updated to:Zhao *** on the major gene and multigene mixed inheritance and QTL mapping for early maturity traits in upland *** Acad Agric ***://***/10.3969/***.201600501.(in Chinese with English abstract).***’Results’part,’Phenotype analysis of 238 cotton boll abscission among cotton accessions’paragraph,the phenotype analysis of AR1 ranging from 19.27%–63.79%,which was wrongly written as 19.27%-63.97%.***‘2018KRL’is modified to‘2018KEL’in Table 1.

关键词： germplasm traits cotton

A case study of a micro-inversion event in dark brown fibre cotton(Gossypium hirsutum)

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The Crop Journal 2020年第4期8卷 577-585页

作者： Tianwang Wen Tian Yao chunyuan you Zhongxu Lin National Key Laboratory of Crop Genetic Improvement College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhan 430070HubeiChina Cotton Research Institute Shihezi Academy of Agriculture ScienceShihezi 832003XinjiangChina

Structural variation is a major type of genetic variation that can potentially induce powerful genetic *** this study,we examined the Inv(A07)p1.09 p2.23 genetic inversion in brown fibre cotton at the individual and population genetics levels.A dark-brown fibre mutant that resulted from a distant hybridization between Gossypium barbadense and ***,and a natural population including 30 dark-brown,70 light-brown and 21 white fibre cotton accessions were collected to perform a functional study of this *** results showed that Inv(A07)p1.09 p2.23 can be detected by high-throughput resequencing method,and induce micro-deletion,gene disruption(Ghir_A07 G000980)and abnormal gene expression in the breakpoint ***(A07)p1.09 p2.23 existed in only dark-brown fibre cotton,had undergone negative selection in elite brown fibre cultivars,and was significantly associated with fibre colour and nine fibre *** the Inv(A07)p1.09 p2.23 region,nucleotide diversity was lower,recombination was absent,and linkage disequilibrium was ***,this inversion event in dark-brown fibre cotton produced significant genetic effects,and this study will guide us to better understand the genetic effects of inversion events in dark-brown fibre cotton.

关键词： Gossypium elite cultivar

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棕色棉品种石彩17

中国棉花 2024年第3期51卷 13-15页

作者：唐秉晖任贺丽尤春源石河子农业科学研究院新疆石河子832000

石彩17是于2021年通过新疆维吾尔自治区农作物品种审定委员会审定的早熟棕色棉品种。其高抗枯萎病,抗黄萎病;2016―2017年新疆维吾尔自治区彩色棉组品种区域试验中,2年结果平均666.7 m^(2)籽棉产量、皮棉产量和霜前皮棉产量分别为377.59... 详细信息

石彩17是于2021年通过新疆维吾尔自治区农作物品种审定委员会审定的早熟棕色棉品种。其高抗枯萎病,抗黄萎病;2016―2017年新疆维吾尔自治区彩色棉组品种区域试验中,2年结果平均666.7 m^(2)籽棉产量、皮棉产量和霜前皮棉产量分别为377.59 kg、156.76 kg和155.95 kg,分别比对照品种新彩棉20增产17.30%、16.95%和16.85%;纤维品质达到新疆维吾尔自治区彩色棉品种审定标准要求。主要介绍了石彩17的选育过程、生物学特性、产量表现、纤维品质及主要栽培技术。

关键词：彩色棉品种选育石彩17 棕色棉栽培抗病性早熟高产

Genetic variations in plant architecture traits in cotton(Gossypium hirsutum) revealed by a genomewide association study

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The Crop Journal 2019年第2期7卷 209-216页

作者： Tianwang Wen Baosheng Dai Tao Wang Xinxin Liu chunyuan you Zhongxu Lin National Key Laboratory of Crop Genetic Improvement College of Plant Science and Technology Huazhong Agricultural University Huanggang Academy of Agricultural Sciences Cotton Research Institute Shihezi Academy of Agriculture Science

Plant architecture traits influence crop yield. An understanding of the genetic basis of cotton plant architecture traits is beneficial for identifying favorable alleles and functional genes and breeding elite cultivars. We collected 121 cotton accessions including 100 brownfiber and 21 white-fiber accessions, genotyped them by whole-genome resequencing, and phenotyped them in multiple environments. This genome-wide association study(GWAS)identified 11 quantitative trait loci(QTL) for two plant architecture traits: plant height and fruit spur branch number. Negative-effect alleles were enriched in the elite cultivars. Based on these QTL, gene annotation information, and published QTL, candidate genes and natural genetic variations in four QTL were identified. Ghir_D02 G017510 and Ghir_D02 G017600 were identified as candidate genes for qD02-FSBN-1, and a premature start codon gain variation was found in Ghir_D02 G017510. Ghir_A12 G026570, the candidate gene of qA12-FSBN-2, belongs to the pectin lyase-like superfamily, and a significantly associated SNP, A12_105366045(T/C), in this gene represents an amino acid change. The QTL, candidate genes, and associated natural variations in this study are expected to lay a foundation for studying functional genes and developing breeding programs for desirable architecture in brown-fiber cotton.

关键词： Brown-fiber cotton Plant architecture traits GWAS QTL Genetic variation

Identification of candidate genes for aphid resistance in upland cotton by QTL mapping and expression analysis

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作物学报:英文版 2023年第5期11卷 1600-1604页

作者： Qiushuang An Zhenyuan Pan Nurimanguli Aini Peng Han Yuanlong Wu chunyuan you Xinhui Nie Key Laboratory of Oasis Ecology Agricultural of Xinjiang Production and Construction Corps Agricultural CollegeShihezi UniversityShihezi 832003XinjiangChina Cotton Research Institute of the Shihezi Academy of Agriculture Science Shihezi 832011XinjiangChina

Lignin is one of the main components of cell walls and is essential for resistance to insect pests in *** plants are damaged by aphid(Aphis gossypii) worldwide but resistant breeding is undeveloped due to scarce knowledge on resistance genes and the mechanism. This study reported a lignin biosynthesisrelated gene identified in the F_(2) population derived from the cross between cotton cultivars Xinluzao 61(resistant to aphid) and Xinluzao 50(susceptible to aphid). A quantitative trait locus was mapped on chromosome D04 with a logarithm of odds(LOD) score of 5.99 and phenotypic effect of 27%. RNA-seq analysis of candidate intervals showed that the expression level of GH_D04G1418 was higher in the resistant cultivar than in the susceptible cultivar. This locus is close to AtLAC4 in the phylogenetic tree and contains a conserved laccase domain. Hence, it was designated GhLAC4-3. Silencing of GhLAC4-3 in Xinluzao 61 via virus-induced gene silencing(VIGS) resulted in decreased lignin content and increased susceptibility to aphids. These results suggest that GhLAC4-3 might enhance aphid resistance by regulating lignin biosynthesis in cotton.

关键词： GhLAC4-3 Lignin Gossypium hirsutum Aphid resistance