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Selecting SNP markers reflecting population origin for cacao(Theobroma cacao L.)germplasm identification

Beverage Plant Research 2021年第1期1卷 133-141页

作者： Osman A.Gutiérrez Kathleen Martinez Dapeng Zhang Donald S.Livingstone chris j.turnbull juan Carlos Motamayor USDA-ARS Subtropical Horticulture Research Station 13601 Old Cutler RoadMiamiFL 33158USA USDA-ARS Beltsville Agricultural Research CenterSPCL10300 Baltimore AvenueBldg.001Rm.223BARC-WBeltsvilleMD 20705USA Mars Wrigley Plant Science Laboratory DavisCA 95616USA School of Agriculture Policy and DevelopmentUniversity of ReadingRG66ARUK Universal GeneticSolutions LLCOrlandoFLUSA

Cacao is one of the most economically important agricultural commodities in the world,providing the principal ingredient for the global chocolate *** genotype identification is essential for effective conservation and utilization of cacao ***,we report the screening of 956 candidate SNPs,pre-selected from the 6 and 15K Theobroma cacao SNP Arrays using targeted Genotyping-by-Sequencing on 451 cacao germplasm accessions,representing ten known genetic groups from the tropical *** on call rate(No call rate0.15)and Linkage Disequilibrium(LD≤0.5),a total of 219 SNPs were *** efficacy of these SNP markers for population classification was compared with the previous SSR-based analysis in *** population assignment results of the retained 420 cacao accessions was highly comparable with the SSR *** matrix of genetic distance between SSR and SNP markers is highly correlated(r=0.718;Pject for the development of SNP markers reflecting population origin for cacao germplasm *** SNP markers and the selected reference germplasm for different populations are suitable for use in cacao germplasm management and crop improvement,including genotype identification,seed gardens and nursery accreditation,and cocoa *** is being continued with the emphasis on selecting SNP markers for the detection of sub-population structures in the primary gene pool of ***.

关键词： germplasm origin continued

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On the trails of markers and proxies:the socio-cognitive technologies of human movement,knowledge assemblage,and their relevance to the etiology of nasopharyngeal carcinoma

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Chinese journal of Cancer 2011年第2期30卷 85-95页

作者： David turnbull Victorian Eco-Innovation Lab (VEIL) Architecture Faculty University of Melbourne

Bacteria,pigs,rats,pots,plants,words,bones,stones,earrings,diseases,and genetic indicators of all varieties are markers and proxies for the complexity of interweaving trails and stories integral to understanding human movement and knowledge assemblage in Southeast Asia and around the *** human movement and knowledge assemblage is central to comprehending the genetic basis of disease,especially of a cancer like nasopharyngeal *** problem is that the markers and trails,taken in isolation,do not all tell the same *** movement and knowledge assemblage are in constant interaction in an adaptive process of co-production with genes,terrain,climate,sea level changes,kinship relations,diet,materials,food and transport technologies,social and cognitive technologies,and knowledge strategies and *** carcinoma is the outcome of an adaptive process involving physical,social,and genetic components.

关键词：知识传播人体运动遗传标记运输技术鼻咽癌社会代理创新

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Adapting the botanical landscape of Melbourne Gardens(Royal Botanic Gardens Victoria)in response to climate change

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Plant Diversity 2017年第6期39卷 338-347页

作者： Timothy j.Entwisle chris Cole Peter Symes Royal Botanic Gardens Victoria

Botanic gardens around the world maintain collections of living plants for science, conservation, education, beauty and more. These collections change over time-in scope and content-but the predicted impacts of climate change will require a more strategic approach to the succession of plant species and their landscapes. Royal Botanic Gardens Victoria has recently published a 'Landscape Succession Strategy'for its Melbourne Gardens, a spectacular botanical landscape established in 1846. The strategy recognizes that with 1.6 million visitors each year, responsibility for a heritage-listed landscape and the need to care for a collection of 8500 plant species of conservation and scientific importance, planting and planning must take into account anticipated changes to rainfall and temperature. The trees we plant today must be suitable for the climate of the twenty-second century. Specifically, the Strategy sets out the steps needed over the next twenty years to transition the botanic garden to one resilient to the climate modelled for2090. The document includes a range of practical measures and achievable(and at times somewhat aspirational) targets. Climate analogues will be used to identify places in Australia and elsewhere with conditions today similar to those predicted for Melbourne in 2090, to help select new species for the collection. Modelling of the natural and cultivated distribution of species will be used to help select suitable growth forms to replace existing species of high value or interest. Improved understanding of temperature gradients within the botanic garden, water holding capacity of soils and plant water use behaviour is already resulting in better targeted planting and irrigation. The goal is to retain a similar diversity of species but transition the collection so that by 2036 at least 75% of the species are suitable for the climate in 2090. Over the next few years we hope to provide 100% of irrigation water from sustainable water sources, and

关键词： Climate change Landscape succession Botanic garden Uving collection

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Effects of vitamin supplementation on inflammatory markers and psychological wellbeing among distressed women:a randomized controlled trial

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journal of Integrative Medicine 2018年第5期16卷 322-328页

作者： j.M.Oliver-Baxter H.S.Whitford D.A.turnbull M.j.Bond School of Psychology The University of Adelaide Sansom Institute for Health Research University of South Australia School of Medicine Flinders University

Background： Multivitamins are a popular supplement taken to promote physical and mental health. During periods of stress, they may have a protective role for health and wellbeing, although the current evidence of their efficacy is mixed. Objective： To determine whether multivitamin supplementation impacts psychological and inflammatory markers of women who are experiencing psychological distress. Design, setting, participants and interventions： An 8-week randomized controlled trial was conducted to assess changes in both psychological state and pro-inflammatory markers of patients receiving multivi- tamins or placebo. The sample comprised women who reported elevated psychological distress in the previous 4 weeks. Main outcome measures： Psychological state was assessed using Spielberger＇s State-Trait Personality Inventory to assess anxiety, curiosity, depression and anger. Pro-inflammatory markers comprised interleukin （IL）-113, IL-5, IL-6, turnout necrosis factor （TNF）-α and TNF-6. Results： Improvements across time were observed for all psychological measures and cytokines, except IL-5, but were independent of the active intervention. Only TNF-β demonstrated a significant differential change between groups over the course of the intervention, in favour of multivitamin supplementation （active group mean rank decreased from 11.1 to 7.1 ; placebo group mean rank decreased from 8.9 to 7.8）. Conclusion： The results suggest that administration of multivitamins was not effective in improving psychological stare. However, some evidence supported the positive impact of multivitamin supplementation on pro-inflammatory cytokine profiles of women currently experiencing stress.

关键词： Psychological stress Cytokines Vitamins Randomized controlled trial

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State of the art of friction modelling at interfaces subjected to elastohydrodynamic lubrication(EHL)

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Friction 2021年第2期9卷 207-227页

作者： Zhuming BI Donald W.MUELLER chris W.j.ZHANG Civil and Mechanical Engineering Purdue University Fort WayneIN 46805USA Department of Mechanical Engineering University of SaskatchewanSaskatoon SK S7N 5A9Canada

Elastohydrodynamic lubrication(EHL)is a type of fluid-film lubrication where hydrodynamic behaviors at contact surfaces are affected by both elastic deformation of surfaces and lubricant *** of contact interfaces under EHL is challenging due to high nonlinearity,complexity,and the multi-disciplinary *** paper aims to understand the state of the art of computational modelling of EHL by(1)examining the literature on modeling of contact surfaces under boundary and mixed lubricated conditions,(2)emphasizing the methods on the friction prediction occurring to contact surfaces,and(3)exploring the feasibility of using commercially available software tools(especially,Simulia/Abaqus)to predict the friction and wear at contact surfaces of objects with relative reciprocating motions.

关键词： elastohydrodynamic lubrication(EHL) lubricant rheology finite element analysis(FEA) friction prediction Simulia/Abaqus surface roughness coefficient of friction(CoF)

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Attitude control of multi-spacecraft systems on SO(3)with stochastic links failure

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Chinese journal of Aeronautics 2024年第3期37卷 320-331页

作者： KANG Zeyu SHEN Qiang WU Shufan chris j.DAMAREN MU Zhongcheng School of Aeronautics and Astronautics Shanghai Jiao Tong UniversityShanghai 200240China Institute for Aerospace Studies University of TorontoTorontoOntario M3H 5T6Canada

In this paper,for Multi-Spacecraft System(MSS)with a directed communication topology link and a static virtual leader,a controller is proposed to realize attitude consensus and attitude stabilization with stochastic links failure and actuator ***,an MSS attitude error model suitable for a directed topology link and with a static virtual leader based on SO(3)is derived,which considers that the attitude error on SO(3)cannot be defined based on algebraic ***,we design a controller to realize the MSS on SO(3)with attitude consensus and attitude stabilization under stochastic links failure and actuator ***,the simulation results of a multi-spacecraft system with stochastic links failure and a static virtual leader spacecraft are demonstrated to illustrate the efficiency of the attitude controller.

关键词： Multi-spacecraft systems Attitude consensus Attitude stabilization Stochastic links failure Super-martingale convergence

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Universal insertion of molecules in ionic compounds under pressure

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National Science Review 2024年第1期11卷 120-128页

作者： Feng Peng Yanming Ma chris j.Pickard Hanyu Liu Maosheng Miao College of Physics and Electronic Information Luoyang Normal University Department of Chemistry and Biochemistry California State University Northridge State Key Laboratory of Superhard Materials & Key Laboratory of Material Simulation Methods and Software of Ministry of Education College of Physics Jilin University International Center of Future Science Jilin University Department of Materials Science & Metallurgy University of Cambridge Advanced Institute for Materials Research Tohoku University Department of Earth Science University of California Santa Barbara

Using first-principles calculations and crystal structure search methods, we found that many covalently bonded molecules such as H2, N2, CO2, NH3, H2O and CH4may react with NaC l, a prototype ionic solid,and form stable compounds under pressure while retaining their molecular structure. These molecules,despite whether they are homonuclear or heteronuclear, polar or non-polar, small or large, do not show strong chemical interactions with surrounding Na and Cl ions. In contrast, the most stable molecule among all examples, N2, is found to transform into cyclo-N5-anions while reacting with NaC l under high pressures. It provides a new route to synthesize pentazolates, which are promising green energy materials with high energy density. Our work demonstrates a unique and universal hybridization propensity of covalently bonded molecules and solid compounds under pressure. This surprising miscibility suggests possible mixing regions between the molecular and rock layers in the interiors of large planets.

关键词： molecule-solid hybrid materials high-pressure crystal structure prediction density functional theory planet interior

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Estimation of premature forests in Georgia (USA) using *** Service FIA data and Landsat imagery

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journal of Forestry Research 2017年第6期28卷 1241-1252页

作者： Hojung Kim chris j. Cieszewski Roger C. Lowe Warnell School of Forestry and Natural Resources University of Georgia 180 E. Green Street AthensGA 30602 USA

We used geographic information system applications and statistical analyses to classify young, premature forest areas in southeastern Georgia using combined data from Landsat TM 5 satellite imagery and ground inventory data. We defined premature stands as forests with trees up to 15 years old. We estimated the premature forest areas using three methods: maximum likelihood classification(MLC), regression analysis, and k-nearest neighbor(k NN)modeling. Overall accuracy(OA) of classifying the premature forest using MLC was 82% and the Kappa coefficient of agreement was 0.63, which was the highest among the methods that we have tested. The k NN approach ranked second in accuracy with OA of 61% and a Kappa coefficient of agreement of 0.22. Regression analysis yielded an OA of 57% and a Kappa coefficient of 0.14. We conclude that Landsat imagery can be effectively used for estimating premature forest areas in combination with image processing classifiers such as MLC.

关键词： Landsat Maximum likelihood classification Regression analysis k-nearest neighbor

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Planting position and shade enhance native seedling performance in forest restoration for an endangered malagasy plant

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Plant Diversity 2019年第2期41卷 118-123页

作者： Cyprien Miandrimanana j.Leighton Reid Tahiry Rivoharison chris Birkinshaw Missouri Botanical Garden Madagascar Research and Conservation Program Center for Conservation and Sustainable Development Missouri Botanical Garden

The critically endangered tree Schizolaena tampoketsana is confined to a few diminished and degraded forest fragments on the Malagasy highlands. This habitat is vulnerable to loss due to frequent fires in the surrounding grassland that threaten to spread into the forest. One of these fragments is the focus a conservation project and here the managers aim to conserve S. tampoketsana by restoring its forest habitat to its former extent as evidenced by remnant woody plants. To inform this activity the survival and early-stage growth of seedlings of four locally native tree species were compared under contrasting conditions of proximity to the remaining forest and shade. After 12 months, seedlings of three species(Baronia taratana, Eugenia pluricymosa, Uapaca densifolia) survived better and experienced improved growth in height in grassland close to the existing forest rather than distant from it, and two survived better with shade rather than unshaded. A number of mechanisms could explain these results including reduced exposure to desiccating sunlight and winds and better soil and greater water availability close to the forest. The seedlings of one species(Nuxia capitata) survived well under all conditions. This study suggests that reforestation in these dry highlands is most feasible adjacent to remnant forest fragments and in microhabitats that minimize water loss, though young plants of some tree species may be capable of surviving in harsher conditions.

关键词： Grassland Fire Forest restoration Local environment Schizolaena tampoketsana

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Modified thin manual Descemet stripping endothelial keratoplasty with air-guided, non-pachymetric donor lenticule dissection: outcomes of graft thickness and complication rate

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International journal of Ophthalmology(English edition) 2020年第2期13卷 342-345页

作者： Abdo Karim Tourkmani Andrew M j.turnbull Parwez N Hossain Aristides Konstantopoulos David F Anderson Cornea and External Eye Disease Service Department of OphthalmologyUniversity Hospital SouthamptonSouthampton SO166YDUK.

●AIM:To describe a modified technique of donor lenticule dissection for thin manual Descemet stripping endothelial keratoplasty(TM-DSEK).●METHODS:Donor material was soaked in balanced salt solution(BSS)for 30 min,before being mounted on an artificial anterior chamber(AAC).Rather than BSS,the AAC was filled with filtered air,resulting in a visible reflection at the corneal endothelium-air *** reflection served as a landmark for the depth of the dissection,facilitating the creation of a thin lenticule with low risk of *** was commenced at a standardized depth of 500 microns,with no initial pachymetry *** 29 donor corneas were dissected by a novice TM-DSEK *** time,central graft thickness at 2 mo and complications were analysed.●RESULTS:Results were similar to other endothelial keratoplasty techniques,despite the cases being performed by a novice DSEK *** dissection time was 7 min(range 6-10).One graft perforation occurred(3.45%),but the air tamponaded the break and enabled dissection to be restarted and completed from a different *** central graft thickness after at least two months follow-up was 106 microns(range 25-170).●CONCLUSION:A problem with manual DSEK is the risk of graft perforation by attempting to dissect too thin a lenticule,or creating a thick graft due to fear of *** modified air-guided technique addresses this problem,and is recommended for surgeons either embarking on the learning curve,or who wish to achieve more consistently thin grafts while reducing perforation rates.

关键词： Descemet stripping endothelial keratoplasty manual donor lenticule dissection graft thickness

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