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The interplay between histone modifications and nuclear lamina in genome regulation

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Journal of Genetics and Genomics 2025年第1期52卷 24-38页

作者： chang Sun Yanjing Zhao Liping Guo Juhui Qiu Qin peng Institute of Systems and Physical Biology Shenzhen Bay LaboratoryShenzhen 518132China Faculty of Medicine and Health Sciences Barcelona UniversityBarcelonaSpain Division of Life Science Hong Kong University of Science and TechnologyClear Water BayKowloonHong KongChina School of Biology and Biological Engineering South China University of TechnologyGuangzhouGuangdong 510006China Key Laboratory for Biorheological Science and Technology of Ministry of Education State and Local Joint Engineering Laboratory for Vascular ImplantsCollege of BioengineeringChongqing UniversityChongqing 400030China

Gene expression is regulated by chromatin architecture and epigenetic remodeling in cell homeostasis and *** modifications act as the key factors to modulate the chromatin *** histone modifications are strongly associated with the localization of *** primarily localizes at the nuclear periphery,where it interacts with lamina proteins to suppress gene *** this review,we summarize the potential bridges that have regulatory functions of histone modifications in chromatin organization and transcriptional regulation at the nuclear *** use lamina-associated domains(LADs)as examples to elucidate the biological roles of the interactions between histone modifications and nuclear lamina in cell differentiation and *** the end,we highlight the technologies that are currently used to identify and visualize histone modifications and LADs,which could provide spatiotemporal information for understanding their regulatory functions in gene expression and discovering new targets for diseases.

关键词： Histone modifications Chromatin organization Nuclear lamina Lamina-associated domain Genome regulation Cell differentiation

Optimizing distribution of multiple tuned mass dampers for building structures with inverse element exchange method

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Earthquake Engineering and Engineering Vibration 2025年第1期24卷 187-199页

作者： peng-Tai Chan Department of Marine Environment and Engineering Sun Yat-sen University(NSYSU)Kaohsiung 804TaiwanChina

Multiple tuned mass dampers(MTMDs)reduce dynamic response with multiple specified frequencies of building *** optimization algorithms for placement design exist,though they rarely conform to code-based verification nor produce high quality solutions without high computational effort and high *** study proposes an inverse element exchange method(IEEM)with multi-level programming and compares it to a single tuned mass damper(STMD)and uniform distribution of multiple tuned mass dampers in the frequency and time domains.A ten-story shear building is used for the numerical case *** results show that the proposed method can offer improvement over the STMD,uniform distribution of multiple tuned mass dampers,and distribution optimized by genetic algorithms(GA)with regard to minimizing the interstory drift ratio(IDR)in both the frequency and time domains and the time consumption for optimization.

关键词： tuned mass damper multiple tuned mass damper optimal damper placement design transfer function

Plastic deformation mechanism of γ-phase U–Mo alloy studied by molecular dynamics simulations

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Chinese Physics B 2025年第1期34卷 468-475页

作者： chang Wang peng peng Wen-Sheng Lai Key Laboratory of Advanced Materials(MOE) School of Materials Science and EngineeringTsinghua UniversityBeijing 100084China

Uranium–molybdenum(U–Mo) alloys are critical for nuclear power generation and propulsion because of their superior thermal conductivity, irradiation stability, and anti-swelling properties. This study explores the plastic deformation mechanisms of γ-phase U–Mo alloys using molecular dynamics(MD) simulations. In the slip model, the generalized stacking fault energy(GSFE) and the modified Peierls–Nabarro(P–N) model are used to determine the competitive relationships among different slip systems. In the twinning model, the generalized plane fault energy(GPFE) is assessed to evaluate the competition between slip and twinning. The findings reveal that among the three slip systems, the {110}slip system is preferentially activated, while in the {112} system, twinning is favored over slip, as confirmed by MD tensile simulations conducted in various directions. Additionally, the impact of Mo content on deformation behavior is emphasized. Insights are provided for optimizing process conditions to avoid γ → α′′ transitions, thereby maintaining a higher proportion of γ-phase U–Mo alloys for practical applications.

关键词： U-Mo alloy molecular dynamics simulation plastic deformation mechanism dislocation slip twin formation

Evaluation of ERA5 reanalysis temperature data over the Qilian Mountains of China

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Journal of Mountain Science 2025年第1期22卷 198-209页

作者： ZHAO peng HE Zhibin School of Computer Science Huainan Normal UniversityHuainan 232038China Linze Inland River Basin Research Station Key Laboratory of Inland River Basin ScienceNorthwest Institute of Eco-Environment and ResourceChinese Academy of SciencesLanzhou 730000China

Air temperature is an important indicator to analyze climate change in mountainous ***5 reanalysis air temperature data are important products that were widely used to analyze temperature change in mountainous ***,the reliability of ERA5 reanalysis air temperature over the Qilian Mountains(QLM)is *** this study,we evaluated the reliability of ERA5 monthly averaged reanalysis 2 m air temperature data using the observations at 17 meteorological stations in the QLM from 1979 to *** results showed that:ERA5 reanalysis monthly averaged air temperature data have a good applicability in the QLM in general(R2=0.99).ERA5 reanalysis temperature data overestimated the observed temperature in the QLM in *** mean square error(RMSE)increases with the increasing of elevation range,showing that the reliability of ERA5 reanalysis temperature data is worse in higher elevation than that in lower ***5 reanalysis temperature can capture observational warming rates *** the smallest warming rates of observational temperature and ERA5 reanalysis temperature are found in winter,with the warming rates of 0.393°C/10a and 0.360°C/10a,*** study will provide a reference for the application of ERA5 reanalysis monthly averaged air temperature data at different elevation ranges in the Qilian Mountains.

关键词： ERA5 Reanalysis data Air temperature Qilian Mountains Climate change

Control of Corner Separation for a Linear Compressor Cascade via Bionic Slanting Riblets at the Endwall

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Journal of Thermal Science 2025年第1期34卷 129-144页

作者： ZHANG peng LI Yonghong CHENG Rixin Key Laboratory of Civil Aircraft Airworthiness Technology Civil Aviation University of ChinaTianjin 300300China College of Aeronautical Engineering Civil Aviation University of ChinaTianjin 300300China

A new passive control approach,utilizing bionic slanting riblets,is employed to mitigate the flow close to the blade endwall in a linear cascade,and its effectiveness and mechanism in controlling corner separation are investigated through numerical *** slanting riblets are positioned at the endwall upstream of the cascade channel,and the influence of riblet height,yaw angle and relative position on the control of corner separation is *** findings indicate that the application of slanting riblets can efficiently counteract corner separation across the stable operational ***,the introduction of riblets with a height of merely 0.1 times the boundary layer thickness results in a significant reduction in total pressure loss by up to 14.53%,while simultaneously enhancing the static pressure coefficient by 21.74%.Flow analysis reveals that minute vortices produced within the riblet channels tend to coalesce,forming a potent large-scale vortex near the boundary layer's base *** phenomenon results in reduced additional losses compared to conventional vortex ***,the induced vortex promotes enhanced mixing between the mainstream flow and boundary layer,inhibiting the lateral displacement of low-energy fluids within the endwall boundary ***,this delays the onset of separation vortex formation and eliminates vortex rings in the corner region,ultimately enhancing the aerodynamic efficiency of the cascade.

关键词： corner separation compressor cascade slanting riblets additional losses vortex generator

Exploratory growth and characterization of CaNdAl_(3)O_(7) single crystal with nonsymmetric structure in tetragonal family

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Journal of Rare Earths 2025年第1期43卷 153-161,I0006页

作者： Xiangkang peng Fapeng Yu State Key Laboratory of Crystal Materials Institute of Crystal MaterialsShandong UniversityJinan250100China

The new component of melilite type crystal CaNdAl_(3)O_(7)(CNA)was grown by the Czochralski pulling *** crystal structure analysis was *** is found that the CNA crystal belongs to the tetragonal system with P-421m space *** cell parameters a=b=0.77461 nm and c=0.51089 *** density and Mohs hardness of CNA crystal are 4.08 g/cm^(3) and 5.45,*** specific heat of the crystal is 0.57-0.77 J/(g·K)in the temperature range of 30-300℃.X-ray photoelectron spectro scopy(XPS)shows that the crystal has stable atomic valence states and chemical *** vibration state of polyhedra groups in the crystal was measured by Raman spectra,and the piezoelectric response was analyzed based on the calculated results for the polyhedra polarization dipole *** relative dielectric permittivity of the CNA crystal at room temperature was determined to be 11.80 and the electrical resistivity was measured to be on the order of 5×10^(6)Ω·cm at 800℃.

关键词： Piezoelectric Melilite Crystal growth High-temperature Czochralski Rareearths

Recent advances in exploring new blood-based biomarkers for the early diagnosis of gastric cancer

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Science China Chemistry 2025年第1期68卷 35-45页

作者： Xinyu peng Qian Ma Da Han School of Life Science Shanghai UniversityShanghai 200444China Institute of Molecular Medicine Shanghai Key Laboratory for Nucleic Acid Chemistry and NanomedicineState Key Laboratory of Oncogenes and Related GenesRenji HospitalSchool of MedicineShanghai Jiao Tong UniversityShanghai 200025China Department of Research and Development Intellinosis Biotechnologies Co.Ltd.Shanghai 201112China

Gastric cancer(GC)is a prevalent and lethal malignancy worldwide,and the 5-year survival rate is less than 30%.The absence of distinctive symptoms often leads to late-stage diagnosis,contributing to a grim *** detection is pivotal for improving the survival rates and outcomes of GC *** diagnostic methods,including gastroscopy and histopathological examination,are restricted in the early diagnosis of *** protein biomarkers,such as carcinoembryonic antigen(CEA),carbohydrate antigen 19-9(CA19-9),and carbohydrate antigen 72-4(CA72-4),exhibit insufficient sensitivity and specificity for GC screening,which diminishes their clinical ***,novel circulating biomarkers,such as circulating tumor cells(CTCs),circulating tumor cell DNA(ct DNA),and circulating free RNA(cf RNA),have emerged as promising candidates in the burgeoning field of liquid biopsy due to their superior sensitivity and *** review focuses on the latest research on blood-based biomarkers for GC diagnosis and examines the clinical potentials and challenges associated with these emerging biomarkers.

关键词： gastric cancer early diagnosis blood

Observation of acoustic hybrid topological phases induced by the p-d orbital interactions

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Science China(Physics,Mechanics & Astronomy) 2025年第1期68卷 128-135页

作者： Xiao Xiang Feng Gao Yu-Gui peng peng Wu Zong-Lin Li Xue-Feng Zhu School of Physics and Innovation Institute Huazhong University of Science and TechnologyWuhan 430074China

In spinless systems,growing attention has recently been attracted to synthetic gauge fields,which redefine the fundamental crystal symmetries by utilizing the projective algebraic ***,synthetic gauge fields have been commonly investigated in single orbital systems,and explorations on hybrid orbitals remain elusive in ***,we report the experimental observation of hybrid topological phases induced by hybrid synthetic gauge flux,which is formed by the interaction between p and d orbitals embedded in acoustic *** breaking the translation symmetries of L_(x) and/or L_(y),we unambiguously demonstrate the first-order Möbius edge states and higher-order corner *** work establishes a platform for seeking exotic topological phases induced by hybrid-orbitals interactions and initializing the framework of hybrid-orbitalsrelated topological *** applications can be anticipated in scenarios such as high-quality sensing and robust wave trapping due to the stepwise energy distribution of the hybrid topological phase.

关键词： topological insulator synthetic gauge field projective symmetry corner states

TavWA1 is critical for wheat growth by modulating cell morphology and arrangement

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Journal of Integrative Plant Biology 2025年第1期67卷 71-86页

作者： Guowei chang Yue Li Lei peng Chuncai Shen Yipeng Lu Wan Teng Yangyang Liu Yingchun Wang Weiqi Zhu Cuimin Liu Xue He Yiping Tong Xueqiang Zhao Key Laboratory of Seed Innovation Institute of Genetics and Developmental BiologyThe Innovative Academy of Seed DesignChinese Academy of SciencesBeijing 100101China University of Chinese Academy of Sciences Beijing 100049China Key Laboratory of Plant Molecular Physiology Institute of BotanyChinese Academy of SciencesBeijing 100093China State Key Laboratory of Molecular Developmental Biology Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijing 100101China Zhaoxian Experiment Station Shijiazhuang Academy of Agricultural and Forestry SciencesZhaoxian 515300China

Plant growth is determined by the production of cells and initiation of new *** genes that control cell number and cell size is of great significance for understanding plant growth *** this study,we characterized two wheat mutants,ah and dl,with abnormal *** ah mutant is a naturally occurring variant characterized by severe dwarfism,increased tiller number,and reduced grain length,while the dl mutant is derived from an ethyl methane sulfonate(EMS)-mutagenized population and exhibits smaller grain size and slightly reduced plant *** analyses revealed abnormal cell number,cell morphology and arrangement in the stems and leaves of the ah mutant,along with reduced cell length in the grains of the dl ***-based cloning identified that both mutants carry mutations in the same gene TavWA1-7D,which encodes a protein with a von Willebrand factor A(vWA)*** ah mutant harbors a 174-bp insertion in the 1,402-bp coding sequence(CDS)of TavWA1-7D,causing premature termination of protein translation,while the dl mutant contains a Glu420Lys *** the TavWA1-7D ahthrough clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated nuclease 9-mediated genome editing leads to a severe dwarfism *** C-terminus of the protein is crucial for its correct subcellular localization and interaction,supporting its critical role for TavWA1-7D *** analysis showed that the dwarf phenotype of the ah mutant is associated with impaired photosynthesis,ribosome function,and nucleosome ***,TavWA1-7D interacts with an E3 ligase,Ta VIP1-3B,the expression levels of which are elevated in both *** and knockout studies of TaVIP1-3B demonstrated its negative regulatory role in cell length and grain ***,our findings suggest that TavWA1-7D plays a vital role in regulating wheat growth and yield-related traits,with the dl mutant's short grain phen

关键词： grain size severe dwarf TaVIP1 TavWA1 wheat