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Editorial:special topic on computation-assisted materials screening and design

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Science China Materials 2024年第4期67卷 1011-1013页

作者： Jinlan wang chenghua Sun Shaohua Dong Department of Chemistry and Biotechnology Swinburne University of TechnologyHawthornVictoria 3122Australia School of Physics Southeast UniversityNanjing 211189China Science China Press Beijing100717China

关键词： typically passing alone

Factors affecting selenium-enrichment efficiency,metabolic mechanisms and physiological functions of selenium-enriched lactic acid bacteria

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Journal of Future Foods 2022年第4期2卷 285-293页

作者： Jiajun Liao chenghua wang College of Light Industry and Food Engineering Guangxi UniversityNanning 530004China

Selenium(Se)-enriched lactic acid bacteria(LAB)are live bacteria preparations that accumulate and bio-transform inorganic Se into organic Se forms including Se-nanoparticles(SeNPs),Se-amino acids and selenoproteins.Se-enriched LAB can play the dual role of organic Se supplement and probiotic effects,and have great applications in the food and biomedical fields.Therefore,more and more attentions have been paid on the Se-enriched LAB.This paper firstly summarized the factors affecting the Se-enrichment efficiency of Se-enriched LAB,then discussed the metabolic mechanisms and physiological functions of Se-enriched LAB,and finally reviewed their applications in food production,in order to provide a guidance for the theoretical and practical implementation of Se-enriched LAB.We concluded that 1)both biomass and the amount of Se enrichment should be used as dual indicators to screen Se-enriched LAB and comprehensively optimize the influencing factors including initial Se concentration,pH,inoculation amount,species of LAB to ensure the Se enrichment efficiency.2)The metabolic mechanism underlining Se-enriched LAB needs to be further revealed,which will facilitate the production of higher value Se compounds by LAB.3)The proven physiological functions of Se-enriched LAB include 5 categories:antioxidant activity,antibacterial activity,improving the physical function of animals,detoxification and disease prevention.However,the application of Se-enriched LAB in medical field currently still lacks clinical research,and convincing clinical evidence of effectiveness for Se-enriched LAB on human being must be established.4)The application in the food field will benefit from the stable existence in the food system of Se-enriched LAB and public acceptance,which come before the various health benefits.In any case,the great potential value of Se-enriched LAB formulations deserves further comprehensive exploration and development.

关键词： SeleniumLactic acid bacteria Physiological functions Selenoprotein Se-nanoparticles(SeNPs)

Screening and identification of purine degrading Lactobacillus fermentum9-4 from Chinese fermented rice-flour noodles

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Food Science and Human Wellness 2022年第5期11卷 1402-1408页

作者： Lianghua Lu Tiantian Liu Xiaoling Liu chenghua wang College of Light Industry and Food Engineering Guangxi UniversityNanning 530004China

The aim of this study was to isolate a new purine-degrading potential probiotic strain from Chinese fermented rice-flour noodles and investigate its potential application in purine-degrading food development for promising anti-gout therapy.A new lactic acid bacteria strain designated as Lactobacillus fermentum 9-4 was screened out from 10 Shengzhamifen samples by a comprehensive method integrating agar plate selection,in vitro purine-metabolizing enzymatic activities of xanthine oxidase and urate oxidase,16 S rRNA gene sequencing and identification.The resting cells of L.fermentum 9-4 showed the maximum degradation rates of inosine and guanosine by respective 2.13×10^(-3) and 2.78×10^(-3) g/(L·min),and the highest assimilation ratio of guanosine by(55.93±3.12)%,which are improvements over LAB strains characterized previously.Yogurt fermented by L.fermentum 9-4 also efficiently assimilated the inosine and guanosine,with respective degradation rates of 98.10%and 98.56%higher than those of the commercial ones.The L.fermentum 9-4 showed excellent survival(>80%)under the conditions of pH 2.5 and 0.1%bile salt.The results suggest that L.fermentum 9-4 may be a promising candidate as a probiotic for developing low-purine foods.

关键词： Hyperuricemia Probiotics Lactobacillus fermentum Low-purine food Fermented rice noodle

Graphitic carbon nitride nanosheets mitigate cadmium toxicity in Glycine max L.by promoting cadmium retention in root and improving photosynthetic performance

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Journal of Environmental Sciences 2024年第5期139卷 543-555页

作者： Kai Xu Yunyu Guo chenghua Xing Ronglong Fu Bin Zou Rongchuan Liu Luyi Cai Jianfang Yan Xi-Lin Wu Miaozhen Cai College of Geography and Environmental Sciences Zhejiang Normal UniversityJinhua 321004China College of Agriculture Jinhua PolytechnicJinhua 321007China

Cadmium(Cd)pollution poses a serious threat to plant growth and yield.Nanomaterials have shown great application potential for alleviation of Cd toxicity to plants.In this study,we applied graphitic carbon nitride nanosheets(g-C_(3)N_(4)NSs)for alleviation of Cd-toxicity to soybean(Glycine max L.).The g-C_(3)N_(4)NSs supplementation significantly improved plant growth and reduced oxidative damage in the Cd-toxicated soybean seedlings through hydroponic culture.Particularly,the g-C_(3)N_(4)NSs dynamically regulated the root cell wall(RCW)components by increasing pectin content and modifying its demethylation via enhancing pectin methylesterase(PME)activity,therefore greatly enhanced stronger RCW-Cd retention(up to 82.8%)and reduced Cd migration to the shoot.Additionally,the g-C_(3)N_(4)NSs reversed the Cd-induced chlorosis,increased photosynthetic efficiency because of enhancement in F_v/F_mration,Y(Ⅱ)and sugars content.These results provide new insights into the alleviation of Cd toxicity to plants by g-C_(3)N_(4)NSs,and shed light on the application of low-cost and environmental-friendly carbon-based NMs for alleviating heavy metal toxicity to plants.

关键词： Cadmium Carbon nitride nanosheets Cell wall Pectin Pectin methylesterase Soybean

Combinatorial co-expression of xanthine dehydrogenase and chaperone XdhC from Acinetobacter baumannii and Rhodobacter capsulatus and their applications in decreasing purine content in food

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Food Science and Human Wellness 2023年第4期12卷 1343-1350页

作者： chenghua wang Ran Zhang Yu Sun You Wen Xiaoling Liu Xinhui Xing College of Light Industry and Food Engineering Guangxi UniversityNanning 530004China Key Laboratory of Industrial Biocatalysis Ministry of EducationInstitute of Biochemical EngineeringDepartment of Chemical EngineeringTsinghua UniversityBeijing 100084China

This study investigated the combinatorial expression of xanthine dehydrogenase(XDH)and chaperone XdhC from Acinetobacter baumannii and Rhodobacter capsulatus and their applications in decreasing purine content in the beer,beef and yeast.Naturally occurring xdhABC gene clusters of A.baumannii CICC 10254 and R.capsulatus CGMCC 1.3366 as well as two refactored clusters constructed by exchanging their xdhC genes were overexpressed in Escherichia coli and purified to near homogeneity.RcXDH chaperoned by AbXdhC showed nearly the same catalytic performance as that by RcXdhC,except for the decreased substrate affinity.While the AbXDH co-expressed with RcXdhC displayed enhanced acidic adaptation but weakened catalytic activity.All the XDHs degraded purines in beer,beef and yeast extract effectively,indicating potential applications in low-purine foods to prevent hyperuricemia and gout.The study also presents a method for exploiting the better chaperone XdhC and novel XDHs by functional complement activity using existing XdhCs such as RcXdhC.

关键词： Co-expression Low purine food Uric acid Xanthine dehydrogenase XdhC

Complete genome sequence of Lactobacillus fermentum 9-4,a purine-degrading Lactobacillus probiotic isolated from Chinese fermented rice-flour noodles

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未来食品学报(英文) 2023年第2期3卷 169-174页

作者： Tiantian Gao Lianghua Lu Qingling Wu chenghua wang College of Light Industry and Food Engineering Guangxi UniversityNanning 530004China

Lactobacillus fermentum 9-4 is a purine-degrading probiotic firstly isolated from traditional fermented rice-flour noodles with special characteristics of southern China's Guangxi Zhuang Autonomous Region.L.fermentum 9-4 could efficiently reduce the purine contents in foods with excellent purine-nucleoside assimilation and purine-metabolizing enzymatic activities.Crude cell lysate of L.fermentum 9-4 showed strong purine degradation abilities on nucleosides including inosine,guanosine,and purines including xanthine and uric acid,indicating a complete purine metabolic pathway to degrade purine substances to allantoin.In this study,the whole genome of L.fermentum 9-4 was sequenced.Its genome consisted of a 2085632 bp circular chromosome without plasmid.The GC content of circular chromosome was 51.25%,including 2089 coding sequences(CDs),15 rRNA operons and 59 tRNA coding genes.Genetic analysis showed that at least 5 protein coding genes were related to purine lowering ability.In addition,neither toxic virulence factor nor drug resistance gene was identified by searching the virulence factor database and drug resistance gene database,suggesting good safety of L.fermentum 9-4.The results showed that L.fermentum 9-4 has a good potential for the development and utilization as a purine-degrading probiotic for low-purine foods.

关键词： Lactobacillus fermentum Low purine food Fermented rice-floor noodles Genome

Multi-omics joint analysis revealed the metabolic profile of retroperitoneal liposarcoma

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Frontiers of Medicine 2024年第2期18卷 375-393页

作者： Fu’an Xie Yujia Niu Lanlan Lian Yue wang Aobo Zhuang Guangting Yan Yantao Ren Xiaobing Chen Mengmeng Xiao Xi Li Zhe Xi Gen Zhang Dongmei Qin Kunrong Yang Zhigang Zheng Quan Zhang Xiaogang Xia Peng Li Lingwei Gu Ting Wu chenghua Luo Shu-Hai Lin Wengang Li Cancer Research Center Xiang’an Hospital of Xiamen UniversitySchool of MedicineXiamen UniversityXiamen361102China State Key Laboratory of Cellular Stress Biology School of Life SciencesFaculty of Medicine and Life SciencesXiamen UniversityXiamen361102China Xiamen University Research Center of Retroperitoneal Tumor Committee of Oncology Society of Chinese Medical Association Xiamen UniversityXiamen361102China Department of Laboratory Medicine Xiang’an Hospital of Xiamen UniversitySchool of MedicineXiamen UniversityXiamen361102China Department of Retroperitoneal Tumor Surgery Peking University International HospitalBeijing102206China School of Public Health Harvard UniversityBostonMA02115USA Laboratory of Biochemistry and Molecular Biology Research Department of Clinical LaboratoryFujian Medical University Cancer HospitalFuzhou350014China Surgery Department Affiliated Fuzhou First Hospital of Fujian Medical UniversityFuzhou350009China National Institute for Data Science in Health and Medicine Xiamen UniversityXiamen361102China Department of Hepatobiliary Surgery Xiang’an Hospital of Xiamen UniversitySchool of MedicineXiamen UniversityXiamen361102China

Retroperitoneal liposarcoma(RLPS)is the main subtype of retroperitoneal soft sarcoma(RSTS)and has a poor prognosis and few treatment options,except for surgery.The proteomic and metabolic profiles of RLPS have remained unclear.The aim of our study was to reveal the metabolic profile of RLPS.Here,we performed proteomic analysis(n=10),metabolomic analysis(n=51),and lipidomic analysis(n=50)of retroperitoneal dedifferentiated liposarcoma(RDDLPS)and retroperitoneal well-differentiated liposarcoma(RWDLPS)tissue and paired adjacent adipose tissue obtained during surgery.Data analysis mainly revealed that glycolysis,purine metabolism,pyrimidine metabolism and phospholipid formation were upregulated in both RDDLPS and RWDLPS tissue compared with the adjacent adipose tissue,whereas the tricarboxylic acid(TCA)cycle,lipid absorption and synthesis,fatty acid degradation and biosynthesis,as well as glycine,serine,and threonine metabolism were downregulated.Of particular importance,the glycolytic inhibitor 2-deoxy-D-glucose and pentose phosphate pathway(PPP)inhibitor RRX-001 significantly promoted the antitumor effects of the MDM2 inhibitor RG7112 and CDK4 inhibitor abemaciclib.Our study not only describes the metabolic profiles of RDDLPS and RWDLPS,but also offers potential therapeutic targets and strategies for RLPS.

关键词： RLPS proteomics metabolomics lipidomics metabolism

Chemical composition and pharmacological properties of Flos sophorae immaturus, Flos sophorae and Fructus sophorae: a review

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未来食品学报(英文) 2023年第4期3卷 330-339页

作者： Ping Shi Jiajun Liao Ting Duan Qingling Wu Xiaoni Huang Xiaodong Pei chenghua wang College of Light Industry and Food Engineering Guangxi UniversityNanning 530004China

The flower buds and fruits of Sophora japonica are known as Flos sophorae immaturus(Chinese Huaimi,FSI),Flos sophorae(Chinese Huaihua,FLS)and Fructus sophorae(Chinese Huaijiao,FRS)due to their different physiological forms.FSI and FLS are precious resources of homology of medicine and food,while FRS is a valuable Chinese herb,and all of which have been used for thousands of years.There are great differences in the active ingredients,functions and toxicological properties of FSI,FLS and FRS.However,they are often confused and assumed to have fairly similar validity,which is detrimental to their precision development of resources of homology of medicine and food.This review summarized the active constituents,analytical techniques and pharmacological properties of FSI,FLS and FRS,then systematically compared their differences.The article will help people better understand and distinguish the differences and characteristics of FSI,FLS and FRS in bioactive constituents,content of functional components and pharmacological properties,which can contribute to their highly efficient targeted applications in the future food and medical fields.

关键词： Flos sophorae immaturus Flos sophorae Fructus sophorae Active constituents Analytic techniques Pharmacological properties

Cross-species binding spectrum of ACE2 to SARS-CoV-2 RBD

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Science China(Life Sciences) 2023年第3期66卷 639-642页

作者： Xihao Liao Changge Guan chenghua wang Xinjie Chen Xiaomei Lin Lianghua Lu Lu Li Ting wang Nan Su Bian Wu Xinquan wang Chong Zhang Yi wang Yuan Lu Xin-Hui Xing Key Laboratory for Industrial Biocatalysis Ministry of Education of ChinaDepartment of Chemical EngineeringTsinghua UniversityBeijing 100084China College of Light Industry and Food Engineering Guangxi UniversityNanning 530004China CAS Key Laboratory of Microbial Physiological and Metabolic Engineering State Key Laboratory of Microbial ResourcesInstitute of MicrobiologyChinese Academy of SciencesBeijing 100101China The Ministry of Education Key Laboratory of Protein Science Beijing Advanced Innovation Center for Structural BiologyBeijing Frontier Research Center for Biological StructureCollaborative Innovation Center for BiotherapySchool of Life SciencesTsinghua UniversityBeijing 100084China Center for Synthetic and Systems Biology Tsinghua UniversityBeijing 100084China Institute of Biopharmaceutical and Health Engineering Tsinghua Shenzhen International Graduate SchoolShenzhen 518055China Institute of Biomedical Health Technology and Engineering Shenzhen Bay LaboratoryShenzhen 440300China

Dear Editor,Severe acute respiratory syndrome coronavirus 2(SARSCo V-2)is the cause of COVID-19,which has posed a massive threat to human health,economy,and security worldwide(Bai et al.,2022).Genomic analysis of SARS-Co V-2 and related coronaviruses revealed that SARS-Co V and SARS-Co V-2likely had ancestors(Xu et al.,2020),which might originate in bats,followed by subsequent spread within intermediate hosts(spillover hosts)and then transmission to humans(wang et al.,2021).

关键词： ACE2 acute