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Turbo-taxonomy to assemble a megadiverse lichen genus:seventy new species of Cora(Basidiomycota:Agaricales:Hygrophoraceae),honouring David Leslie Hawksworth’s seventieth birthday

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Fungal Diversity 2017年第3期84卷 139-207页

作者： Robert Lücking Manuela Dal Forno Bibiana Moncada Luis Fernando Coca Leidy Yasmín vargas-Mendoza André Aptroot Laura Juliana Arias Betty Besal Frank Bungartz Diego Mauricio Cabrera-Amaya Marcela E.S.Cáceres José Luis Chaves Sionara Eliasaro Martha Cecilia Gutiérrez Jesús E.Hernández Marin María de los Ángeles Herrera-Campos María E.Holgado-Rojas Harald Jonitz Martin Kukwa Fabiane Lucheta Santiago Madriñán Marcelo Pinto Marcelli Suzana Maria de Azevedo Martins Joel A.Mercado-Díaz Jorge alberto Molina Eduardo A.Morales Peter R.Nelson Freddy Nugra Francisco Ortega Telma Paredes Ayda Lucía Patiño Rouchi Nadine Peláez-Pulido Rosa Emilia Pérez Pérez Gary B.Perlmutter Eimy Rivas-Plata Javier Robayo Camilo Rodríguez Diego Fernando Simijaca Edier Soto-Medina Adriano Afonso Spielmann Alejandra Suárez-Corredor Jean-Marc Torres carlos alberto vargas Alba Yánez-Ayabaca Gothamie Weerakoon Karina Wilk Marcela Celis Pacheco Mauricio Diazgranados Grischa Brokamp Thomas Borsch Patrick M.Gillevet Masoumeh Sikaroodi James D.Lawrey Botanical Garden and Botanical Museum Berlin KöniginLuise-Straße 6-814195 BerlinGermany Science Education The Field Museum1400 South Lake ShoreChicagoIL 60605USA Department of Botany Smithsonian InstitutionNational Museum of Natural History10th St Constitution Ave NWWashingtonDC 20560USA Department of Environmental Science and Policy George Mason UniversityFairfaxVA 22030-4444USA Licenciatura en Biologı´a Universidad Distrital Francisco Jose´de CaldasCra.4 No.26D-54Torre de LaboratoriosHerbarioBogota´D.C.Colombia Herbario Universidad de Caldas(FAUC) Edificio BicentenarioCalle 65No.26-10ManizalesA.A.275CaldasColombia ABL Herbarium G.v.d.Veenstraat 1073762 XK SoestThe Netherlands Biologı´a Universidad del Quindı´oCarrera 15 Calle 12 NorteArmeniaQuindı´oColombia 120 Chavis Avenue LexingtonVA 24450USA Charles Darwin Foundation Puerto AyoraSanta Cruz IslandGala´pagosEcuador Schedestraße 8 53113 BonnGermany Jardı´n Bota´nico de Bogota´Jose´Celestino Mutis Avenida Calle 63 No.68-95Bogota´D.C.Colombia Departamento de Biocieˆncias Universidade Federal de SergipeAvenida Vereador Olı´mpio Grandes/n.ItabaianaCEP:49.500-000 SergipeBrazil Laboratorio de Hongos Instituto Nacional de Biodiversidad(INBio)Apdo.22-3100Santo Domingo de HerediaCosta Rica Departamento de Botaˆnica Universidade Federal do Parana´Campus Polite´cnicoSetor de Cieˆncias Biolo´gicasAv.Cel.Francisco H.dos Santoss/nJardim das Ame´ricas81531-980 CuritibaPRBrazil Ingenierı´a Ambiental Universidad Distrital Francisco Jose´de CaldasCarrera 5 Este No.15-82Av.CircumvalarBogota´D.C.Colombia Instituto Experimental Jardı´n Bota´nico Dr.Tobı´as Lasser Centro de Investigacio´n y DesarrolloUniversidad Central de VenezuelaAve.Salvador AllendeJardı´n Bota´nico de CaracasApartado#2156Caracas 1010-AVenezuela Departamento de Bota´nica Instituto de Biologı´aUniversidad Nacional Auto´noma de Me´xicoApartado Postal 70-36704510 Ciudad De Me´xicoMexico Facultad de Ciencias Escuela Profesional de Biologı´aUniv

Following a large-scale phylogenetic study of the lichenized genus Cora(Basidiomycota:Agaricales:Hygrophoraceae),we formally describe 70 new species,honouring the seventieth birthday of David Leslie Hawksworth,one of the preeminent figures in mycology and lichenology in the past 50 *** on an updated phylogeny using the ITS fungal barcoding locus,we now recognize 189 taxa in a genus that until recently was considered to represent a single species;including this contribution,92 of these are formally recognized,including five taxa based on historical names or collections that have not been *** of Cora can be recognized by a combination of morphological(size,colour,lobe configuration,surface hairs,hymenophore size and shape),anatomical(thallus thickness,cortex structure,photobiont type,hyphal papillae),and ecogeographical features(substrate,habitat,distribution),and a keytable allowing the identification of all accepted taxa is *** new species are:Cora accipiter Moncada,Madrin˜a´n&Lücking ***.,*** Moncada,Soto-Medina&Lücking ***.,*** Moncada,Dal Forno&Lücking ***.,*** Dal Forno,Chaves&Lücking ***.,*** Moncada,***ı´guez&Lücking ***.,*** Lücking,Moncada&*** ***.,*** Moncada,Ya´nez-Ayabaca&Lücking ***.,*** Moncada,Patin˜o&Lücking ***.,*** Lücking,***&Dal Forno ***.,*** Holgado,Rivas Plata&Perlmutter ***.,*** Dal Forno,Eliasaro&Spielmann ***.,*** Nugra,Dal Forno&Lücking ***.,*** Lücking,Martins&Lucheta ***.,*** Moncada,R.-***´rez&Lücking ***.,*** Moncada,***.&Lücking ***.,*** Moncada,CabreraAmaya&Lücking ***.,*** Moncada,R.-***´rez&***.,*** Lücking,***&Dal Forno ***.,*** Moncada,***´rez-Corredor&Lücking ***.,*** Moncada,***&Lücking ***.,***

关键词： Bolivia Citizen science Chile Mexico Puerto Rico Sri Lanka

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Optimal Positioning Strategy for Multi-Camera Zooming Drones

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IEEE/CAA Journal of Automatica Sinica 2024年第8期11卷 1802-1818页

作者： Manuel vargas carlos Vivas Teodoro Alamo Department of System Engineering and Automation University of SevilleSeville 41092Spain

In the context of multiple-target tracking and surveillance applications,this paper investigates the challenge of determining the optimal positioning of a single autonomous aerial vehicle or agent equipped with multiple independently-steerable zooming cameras to effectively monitor a set of targets of *** camera is dedicated to tracking a specific target or cluster of *** key innovation of this study,in comparison to existing approaches,lies in incorporating the zooming factor for the onboard cameras into the optimization *** enhancement offers greater flexibility during mission execution by allowing the autonomous agent to adjust the focal lengths of the onboard cameras,in exchange for varying real-world distances to the corresponding targets,thereby providing additional degrees of freedom to the optimization *** proposed optimization framework aims to strike a balance among various factors,including distance to the targets,verticality of viewpoints,and the required focal length for each *** primary focus of this paper is to establish the theoretical groundwork for addressing the non-convex nature of the optimization problem arising from these *** this end,we develop an original convex approximation *** paper also includes simulations of diverse scenarios,featuring varying numbers of onboard tracking cameras and target motion profiles,to validate the effectiveness of the proposed approach.

关键词： Convex optimization projective transformation unmanned aerial vehicle visual object tracking visual surveillance.

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Earthquake distribution and lithospheric rheology beneath the Northwestern Andes, Colombia

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Geodesy and Geodynamics 2021年第1期12卷 1-10页

作者： Carla Lagardère carlos A.vargas Department of Geosciences Universidad Nacional de ColombiaBogotaColombia Ecole nationale superieure en environnement georessources et ingenierie du developpement durable(ENSEGID)BordeauxFrance

The rheological behavior of the lithosphere beneath the Northwestern(NW)Andes(Colombian)remains uncertain under a complex geological ***,we analyze the earthquake distribution and the stress drop on the western and the eastern of the transition area between the Upper Magdalena Valley(UMV)and the Middle Magdalena Valley(MMV),a zone related to a plate tectonic transition from steeper to flatter subduction style slabs(Nazca and Caribbean plates).Our results consistently explain the tectonic and geodynamic context of the study area supported in two rheological profiles,which reveal the brittle/ductile transition of the lithospheric crust and mantle and allow to constrain the lithospheric rheological *** subduction phenomenon of the Nazca Plate under the South American Plate is observed in the western *** the eastern region,we find a remarkable aseismic zone under the Eastern Cordillera below 20-km-deep,which made more difficultan accurate estimation of the crust/mantle *** seismic particularity leads us to support the hypothesis of a delamination process due to the tectonic overload generated by the Eastern Cordillera,and that promotes thermal *** results also suggest that the earthquake dataset correlated with rheological estimations may offer a consistent interpretation of the mechanical behavior of the lithosphere.

关键词： Lithosphere rheology Seismicity Northwestern Andes Delamination process

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Establishing geothermometric constraints on the local geothermal gradients:Case study of the Eastern Cordillera Basin,Colombia

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Geodesy and Geodynamics 2018年第4期9卷 271-280页

作者： carlos A.Barrera carlos A.vargas Jorge E.Cortes Universidad Nacional de Colombia Carrera 45 No 26-85 Bogota Colombia Petromarkers Inc. 16850 Saturn Ln Houston TX 77058 United States

Geochemical analyses were performed on 170 coal bed-trapped groundwater samples from 97 underground mines located in the Eastern Cordillera Basin, Colombia. The waters analyzed in this paper are from exploited coal beds, located up to 0.73 km deep, which emerge along with the local fault *** hydrochemical facies were classified based on the concentration of major ions by inferring the equilibrium state and rock water source. The main hydrochemical facies presented in the groundwater study are SO_4-Ca-Mg, HCO_3-Ca, HCO_3-Ca-Mg, and SO_4-HCO_3 mixed waters. We used geothermometric equations to estimate the most probable temperature under in-situ conditions and the propagation of errors theory to test the results. The geothermal gradient in the study area is close to 30℃/km, which is consistent with measurements from oil wells within the study area. Principal Component Analysis was used to explain factors affecting formation water composition and hydrogeochemical evolution of aquifers.

关键词： Geothermometers Hydrochemistry Coal bed Formation waters Eastern Cordillera Basin

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Depth to the bottom of magnetic layer in South America and its relationship to Curie isotherm,Moho depth and seismicity behavior

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Geodesy and Geodynamics 2018年第1期9卷 93-107页

作者： Javier Idárraga-García carlos A.vargas Research Group on Geophysics Universidad Nacional de ColombiaBogotáColombia Deportment of Geosciences.Universidad Nacional de Colombia.Bogota.Colombia

We have estimated the DBML（depth to the bottom of the magnetic layer） in South America from the inversion of magnetic anomaly data extracted from the EMAG2 grid. The results show that the DBML values, interpreted as the Curie isotherm, vary between -10 and -60 km. The deepest values（〉-45） are mainly observed forming two anomalous zones in the central part of the Andes Cordillera. To the east of the Andes, in most of the stable cratonic area of South America, intermediate values（between -25 and-45 km） are predominant. The shallowest values（〈-25 km） are present in northwestern corner of South America, southern Patagonia, and in a few sectors to the east of the Andes Cordillera. Based on these results, we estimated the heat flow variations along the study area and found a very good correlation with the DBML. Also striking is the observation that the thermal anomalies of low heat flow are closely related to segments of flat subduction, where the presence of a cold and thick subducting oceanic slab beneath the continent, with a virtual absence of hot mantle wedge, leads to a decrease in the heat transfer from the deeper parts of the *** comparing our results with the Moho depths reported by other authors, we have found that the Curie isotherm is deeper than Moho in most of the South American Platform（northward to -20°S）, which is located in the stable cratonic area at the east of the Andes. This is evidence that the lithospheric mantle here is magnetic and contributes to the long wavelength magnetic signal. Also, our results support the hypothesis that the Curie isotherm may be acting as a boundary above which most of the crustal seismicity is concentrated. Below this boundary the occurrence of seismic events decreases dramatically.

关键词： Magnetic layer depth Curie isotherm Heat flow Crustal seismicity Flat subduction South America

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Selection and Analysis of Polymorphisms in Somaclonal Variants of Agave americana Resistant to Fusarium oxysporum via an Ethyl Methanesulphonate Treatment

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Phyton-International Journal of Experimental Botany 2021年第6期90卷 1727-1739页

作者： Sheila Jazmín Reyes-Zambrano carlos alberto Lecona-Guzmán Federico Antonio Gutiérrez-Miceli Víctor Manuel Ruiz-Valdiviezo Arely Anayansi vargas-Díaz Laboratorio de Biotecnología Vegetal Instituto Tecnológico de Tuxtla GutiérrezTecnológico Nacional de MéxicoTuxtla GutiérrezChiapas29050México CONACYT-Colegio de Postgraduados Campus Campeche ChampotónCampeche24450México

Agave americana *** were exposed to different concentrations of ethyl methanesulphonate(EMS)0,15,30,45 and 60 mM and to different times of exposure(2 and 4 h).The viability and capacity of shoot formation were shown to be affected when the callus were exposed to high concentrations(30–60 mM).Only the callus exposed to 15 mM EMS presented shoot formation;the exposure time of two hours produced the largest quantity of shoots regenerated per callus(21 shoots/callus).In order to generate somaclonal variants resistant to Fusarium oxysporum,a selection pressure was applied through of a culture filtrate(CF)of 100 ppm of the *** was made in callus obtained in the treatment with 15 mM EMS during 2 h of *** CF caused oxidation and necrosis in 71.25%of the callus;however,they were capable of generating shoots(3.5 shoots/callus).Molecular markers type RAPD,ISSR and DAMD were used to evaluate the genetic variation arising from the mutations caused by EMS on control plants and 16-month-old somaclonal *** polymorphic information content(PIC)for each one of the initiating groups was:0.28(DAMD),0.09(ISSR)and 0.14(RAPD).DAMD revealed a greater percentage of polymorphism than RAPD and *** bands were detected in the somaclonal *** indicated that the EMS caused genetic variation in the regenerated plants conferring resistance to them against Fusarium oxysporum.

关键词： Mutagenesis polymorphisms genetic variation molecular markers

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How to fill the biodiversity data gap:Is it better to invest in fieldwork or curation?

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Plant Diversity 2024年第1期46卷 39-48页

作者： carlos A.vargas Marius Bottin Tiina Sarkinen James E.Richardson Marcela Celis Boris Villanueva Adriana Sanchez Programa de Biología Facultad de Ciencias NaturalesUniversidad del RosarioBogotaD.C.Colombia Subdireccion Científica Jardín Botanico de Bogota“Jose Celestino Mutis”BogotaD.C.Colombia Independent Researcher BogotaD.C.Colombia Tropical Diversity Section Royal Botanic Garden EdinburghUK School of Biological Earth and Environmental SciencesUniversity College CorkCorkIreland Departamento de Química y Biología Universidad del NorteKm.5 Vía Puerto ColombiaArea Metropolitana de Barranquilla 081007Colombia

Data gaps and biases are two important issues that affect the quality of biodiversity information and downstream *** how best to fill existing gaps and account for biases is necessary to improve our current information most *** current main approaches for obtaining and improving data include(1)curation of biological collections,and(2)***,the comparative effectiveness of these approaches in improving biodiversity data remains little *** used the Flora de Bogota project to study the magnitude of change in species richness,spatial coverage,and sample coverage of plant records based on curation versus *** process of curation resulted in a decrease in species richness(synonym and error removal),but it significantly increased the number of records per *** contributed to a slight increase in species richness,via accumulation of new ***,curation led to increases in spatial coverage,species observed by locality,the number of plant records by species,and localities by species compared to ***,curationwas more efficient in producing new information compared to fieldwork,mainly because of the large number of records available in *** recommend intensive curatorial work as the first step in increasing biodiversity data quality and quantity,to identify bias and gaps at the regional scale that can then be targeted with *** stepwise strategy would enable fieldwork to be planned more costeffectively given the limited resources for biodiversity exploration and characterization.

关键词： Colombia Flora de Bogota Sample coverage Species richness Tropical Andes

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Biodiesel Production from Waste Cooking Oil by Enzymatic Catalysis Process

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Journal of Chemistry and Chemical Engineering 2013年第10期7卷 993-1000页

作者： Ignacio Contreras Andrade Fabio Emiro Sierra vargas carlos alberto Guerrero Fajardo Department of Biology and Chemistry University of Sinaloa Culiacan 80007 Mexico Department of Chemistry National University of Colombia Bogota 11001 Colombia

Biodiesel is an excellent option for reducing dependence on fossil fuels with environmental advantages by reducing hazardous emissions. The enzymatic transesterification has attracted the attention of researchers in the last decade and the advantages of enzymatic catalysis show that the production of biodiesel by this route has good potential, mainly because it is friendly environment. For biodiesel, production process by enzyme catalysis is chosen the response surface methodology. It is an experimental strategy to find the best operating conditions oftransesterification reaction to improve the biodiesel quality. The Process has three variables： temperature, molar ratio oil-alcohol and catalyst quantity. The process was monitored by GC-FID （gas chromatography with flame ionization detector）. The yield of the transesterification reaction by enzymatic catalysis decreases with increasing temperature, and may be due to inactivation of the enzyme by denaturation at temperatures above 50 ℃. The second-order design used was the ＂CDC （central design composition）＂ which produced a maximum yield of 95.5% in the transesterification reaction by enzymatic catalysis obtained at a temperature of 45 ℃, molar ratio methanol：oil of 8：1 and a catalyst loading of 8% wt.

关键词： Biodiesel waste cooking oil transesterification reaction enzymatic catalysis biofuel

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Fast magnitude determination using a single seismological station record implementing machine learning techniques

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Geodesy and Geodynamics 2018年第1期9卷 34-41页

作者： Luis H.Ochoa Luis F.Nino carlos A.vargas Universidad Nacional de Colombia Carrera 45 N°26-85 Edificio Manuel Ancizar-Of:330BogotaColombia

In this work a Support Vector Machine Regression（SVMR） algorithm is used to calculate local magnitude（MI） using only five seconds of signal after the P wave onset of one three component seismic station. This algorithm was trained with 863 records of historical earthquakes, where the input regression parameters were an exponential function of the waveform envelope estimated by least squares and the maximum value of the observed waveform for each component in a single station. Ten-fold cross validation was applied for a normalized polynomial kernel obtaining the mean absolute error for different exponents and complexity parameters. The local magnitude（MI） could be estimated with 0.19 units of mean absolute error. The proposed algorithm is easy to implement in hardware and may be used directly after the field seismological sensor to generate fast decisions at seismological control centers, increasing the possibility of having an effective reaction.

关键词： Earthquake early warning Support Vector Machine Regression Earthquake Rapid response Local magnitude Seismic event Seismology Bogota Colombia

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Study of Spider Silk Fibers by Raman Microscopy

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American Journal of Analytical Chemistry 2018年第10期9卷 529-545页

作者： Maria Fernanda vargas-Charry carlos vargas-Hernández Laboratorio de Propiedades Opticas de Materiales (POM) Universidad Nacional de Colombia sede Manizales Manizales-Caldas Colombia

Spider silk fibers of species of the genera Araneus, Gasteracantha, and Linothele sericata were studied. The fibers are composed of axial threads and lateral villi, allowing adhesion to surfaces. Raman spectroscopy was used to determine the surface and internal composition of the threads forming the structure. In the three species, the characteristic amino acid peaks of the spider web were found between 2871 and 2975 cm-1, which belong to L-glycine, L-alanine, L-glutamine, and L-proline. The threads are composed of a protective layer mainly composed of amides, alanine, and glycine. The fibrils surrounding the axial fibers consist mainly of amide II (1533 cm-1), which allows adhesion between the thread and the surfaces onto which the spider weaves the web. For the genus Linothele sericata, there is a peak on the surface of this spider web located at 2145 cm-1, which is associated with isonitriles with R-N-C bonds.

关键词： Spider Silk Fibers Raman Spectroscopy

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