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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles

Fungal Diversity 2020年第2期107卷 I0001-I0016页

作者： Sergei Põlme kessy Abarenkov RHenrik Nilsson Björn D.Lindahl karina Engelbrecht clemmensen Havard kauserud Nhu Nguyen Rasmus kjøller Scott T.Bates Petr Baldrian Tobias Guldberg Frøslev kristjan Adojaan Alfredo Vizzini Ave Suija Donald Pfister Hans-Otto Baral Helle Järv Hugo Madrid Jenni Nordén Jian-kui Liu Julia Pawlowska kadri Põldmaa kadri Pärtel kadri Runnel karen Hansen karl-Henrik Larsson kevin David Hyde Marcelo Sandoval-Denis Matthew E.Smith Merje Toome-Heller Nalin N.Wijayawardene Nelson Menolli Jr Nicole k.Reynolds Rein Drenkhan Sajeewa S.N.Maharachchikumbura Tatiana B.Gibertoni Thomas Læssøe William Davis Yuri Tokarev Adriana corrales Adriene Mayra Soares Ahto Agan Alexandre Reis Machado Andrés Argüelles-Moyao Andrew Detheridge Angelina de Meiras-Ottoni Annemieke Verbeken Arun kumar Dutta Bao-kai cui c.k.pradeep césar Marín Daniel Stanton Daniyal Gohar Dhanushka N.Wanasinghe Eveli Otsing Farzad Aslani Gareth W.Griffith Thorsten H.Lumbsch Hans-Peter Grossart Hossein Masigol Ina Timling Inga Hiiesalu Jane Oja John Y.kupagme József Geml Julieta Alvarez-Manjarrez kai Ilves kaire Loit kalev Adamson kazuhide Nara kati küngas keilor Rojas-Jimenez krišs Bitenieks Laszlo Irinyi LászlóGNagy Liina Soonvald Li-Wei Zhou Lysett Wagner M.catherine Aime MaarjaÖpik María Isabel Mujica Martin Metsoja Martin Ryberg Martti Vasar Masao Murata Matthew PNelsen Michelle cleary Milan c.Samarakoon Mingkwan Doilom Mohammad Bahram Niloufar Hagh-Doust Olesya Dulya Peter Johnston Petr kohout Qian chen Qing Tian Rajasree Nandi Rasekh Amiri Rekhani Hansika Perera Renata dos Santos chikowski Renato L.Mendes-Alvarenga Roberto Garibay-Orijel Robin Gielen Rungtiwa Phookamsak Ruvishika S.Jayawardena Saleh Rahimlou Samantha c.karunarathna Saowaluck Tibpromma Shawn P.Brown Siim-kaarel Sepp Sunil Mundra Zhu-Hua Luo Tanay Bose Tanel Vahter Tarquin Netherway Teng Yang Tom May Torda Varga Wei Li Victor Rafael Matos coimbra Virton Rodrigo Targino de Oliveira Vitor Xavier de Lima Vladimir S.Mikryukov Yongzhong Lu Yosuke Matsuda Yumiko Miyamoto Urm Institute of Ecology and Earth Sciences University of Tartu14A Ravila50411 TartuEstonia Natural History Museum University of Tartu46 Vanemuise Str51003 TartuEstonia Gothenburg Global Biodiversity centre Box 46140530 GothenburgSweden Department of Biological and Environmental Sciences University of GothenburgGothenburgSweden Department of Soil and Environment Swedish University of Agricultural SciencesBox 701475007 UppsalaSweden Department of Forest Mycology and Plant Pathology Swedish University of Agricultural SciencesBox 702675007 UppsalaSweden Section for Genetics and Evolutionary Biology(EvoGene) Department of BiosciencesUniversity of OsloP.O.Box 1066BlindernNO-0316 OsloNorway University of Hawaiʻi at Mānoa 3190 Maile WaySt.John 102HonoluluHIUSA Department of Biology University of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark Purdue University Northwest WestvilleIN 46391USA Institute of Microbiology Czech Academy of SciencesVidenska 108314220 Praha 4Czech Republic GLOBE Institute University of CopenhagenØster Farimagsgade 5KH7.2.321353 CopenhagenDenmark Dipartimento di Scienze della Vita e Biologia dei Sistemi Universitàdi TorinoViale Mattioli 2510125 TorinoItaly Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium Harvard University22 Divinity AveCambridgeMA 02138USA Blaihofstr.42 72074 TübingenGermany SYNLAB Estonia Veerenni 53aTallinn 11313Estonia Escuela de Tecnología Médica Universidad Santo TomásLos Carreras 753OsornoChile centro de Genómica y Bioinformática Universidad MayorCamino La Pirámide 5750HuechurabaSantiagoChile Norwegian Institute for Nature Research(NINA) Sognsveien 680855 OsloNorway School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Evolutionary Biology Faculty of BiologyBiological and Chemical Research CentreUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of Botany Swedish Museum of

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental *** the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and ***,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains *** order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis *** the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,*** resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental *** order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS *** the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.

关键词： Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing community ecology

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Impacts of climate change and Hydrological Hazards on Monsoon crop Patterns in the Lesser Himalaya: A Watershed Based Study

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International Journal of Disaster Risk Science 2012年第2期3卷 98-112页

作者： pradeep k.Rawat Department of Geography Kumaun University Nainital 263002 India

The Lesser Himalaya region is a densely populate d, nonglacial tract of the Himalaya. About 95 percent of the regional population depends on agriculture and forest resources but both have been declining rapidly in recent decades due to climate change and hydrological hazards. The main objective of this study was to assess the integrated impacts of climate change and hydrological hazards on monsoon crop patterns in the Lesser Himalaya through a geographic information system(GIS) database management system(DMS). The DMS comprises four GIS modules: climate informatics, land use informatics, hydro-informatics, and agro-informatics. The Dabka watershed in India’s Uttarakhand State is part of the kosi Basin in the Lesser Himalaya in District Nainital and was chosen as a case study. The climate of the study area, depending on elevation, falls into three climatic zones: subtropical, temperate, and moist temperate, which are favorable for mixed forest, pine forest, and oak forest respectively. The results of the climate-informatics analysis suggest that in recent decades all these climatic zones have shifted towards higher altitudes and the areas of oak and pine forests have decreased. Forest degradation has accelerated hydrological hazards(high runoff, flash floods, river-line floods, soil erosion, and landslides) in monsoon periods, which affected about 22 percent of the cultivated land annually in 2005–2010. Monsoon crop yields decreased by an annual average of 1.40 percent between 1985 and 2010 while the population of the study area increased by an average of 2 percent each year in the same period. The negative correlation between annual crop yields and population growth has led to increased food security risks.

关键词： forest pine watershed

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Improved thermoelectric property of cation-substituted caMnO_3

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chinese Physics B 2015年第9期24卷 542-547页

作者： pradeep kumar Subhash c.kashyap Vijay kumar Sharma H.c.Gupta Department of Physics Shyam Lal CollegeUniversity of Delhi Department of Physics Indian Institute of Technology Delhi

Single-phase pristine and cation-substituted calcium manganite（ca1-xBixMn1-yVyO3-δ） polycrystalline samples were synthesized by the solid state reaction technique. Their thermoelectric properties were measured by a set up that was designed and assembled in the laboratory. The ca1-x BixMn1-yVyO3-δsample with x = y = 0.04 has shown a power factor（S^2σ） of 176 μW/m/k^2 at 423 k, which is nearly two orders of magnitude higher than that of the pristine sample（2.1 μW/m/k2）. The power factor of the substituted oxide remains almost temperature independent as the Seebeck coefficient increases monotonically with temperature, along with the simultaneous decrease in electrical resistivity which is attributed to enhanced electron density due to co-doping of bismuth and vanadium and grain boundary scattering. These cation-substituted calcium manganites can be used as a potential candidate for an n-type leg in a thermoelectric generator（module）.

关键词： thermoelectric materials solid state reaction Seebeck coefficient power factor

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User grouping and optimization-based pilot scheduling for mitigating the pilot contamination in massive multi cell MIMO systems

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International Journal of Modeling, Simulation, and Scientific computing 2020年第6期11卷 161-184页

作者： Ambala pradeep kumar Tadisetty Srinivasulu Department of Electronics and communication Engineering kU college of Engineering and Technology kakatiya University WarangalTelanganaIndia

Massive multiple-input multiple-output(massive MIMO)is a promising approach in wireless communication systems for providing improved link reliability and spectral effi-ciency and it helps several *** main aim is to solve pilot contamination issue in massive MIMO systems;this research paper utilizes two approaches for reducing the *** paper presents the user grouping approach based on sparse fuzzy c-means clustering(sparse FcM),which groups user parameters based on parameters such as large-scale fading factor,SINR,and user ***,same pilot sequences are assigned to center users in which the impact of pilot contamination is limited,while the algorithm assigns orthogonal pilot sequences to the edge users that suffer severely from pilot ***,the proposed user grouping keeps away from the inappropriate grouping of users,enabling effective grouping even under the worst situations of the ***,pilot scheduling is done based on elephant spider monkey optimization(ESMO),which is designed by integrating elephant herding optimization(EHO)into spider monkey optimization(SMO).The performance of pilot scheduling based on grouping-based ESMO is evaluated based on achievable rate and *** proposed method achieves maximal achievable rate of 41.29 bps/Hz and maximal SINR of 124.31 dB.

关键词： Massive MIMO system sparse fuzzy FcM user grouping pilot scheduling large-scale fading factor.

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comparative domain modeling of human EGF-like module EMR2 and study of interaction of the fourth domain of EGF with chondroitin 4-sulphate

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The Journal of Biomedical Research 2011年第2期25卷 100-110页

作者： Mukta Rani Manas R.Dikhit Ganesh c Sahoo pradeep Das Biomedical Informatics Division Rajendra Memorial Research Institute of Medical SciencesAgam KuanPatna 800007India

EMR2 is an EGF-like module containing mucin-like hormone receptor-2 precursor, a G-protein coupled receptor （G-PcR）. Mutation in EMR2 causes complicated disorders like polycystic kidney disease （PkD）. The structure of EMR2 shows that the fifth domain is comprised of EGF-TM7 helices. Functional assignment of EMR2 by support vector machine （SVM） revealed that along with transporter activity, several novel functions are predicted. A twenty amino acid sequence ＂MGGRVFLVFLAFcVWLTLPG＂ acts as the signal peptide responsible for post- translational transport. Eight amino acids are involved in N-glycosylation sites and two cleavage sites are LeuS17 and SerS18 in EMR2. The residue Arg241 is responsible for interaction with glycosaminoglycan and chondroitin sulfate. On the basis of structure, function and ligand binding sites, competitive EMR2 inhibitors designed may decrease the rate of human diseases like Usher＇s syndrome, bilateral frontoparietal polymicrogyria and PkD.

关键词： EMR2 G-protein coupled receptor transmembrane homology modeling EGF-TM7

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Determination of the major geochemical processes of groundwater along the cretaceous-Tertiary boundary of Trichinopoly,Tamilnadu,India

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Acta Geochimica 2020年第5期39卷 760-781页

作者： N.Devaraj S.chidambaram U.Vasudevan k.pradeep M.Nepolian M.V.Prasanna V.S.Adithya R.Thilagavathi c.Thivya Banajarani Panda Department of Earth Sciences Annamalai UniversityChidambaramTamilnadu 608002India Water Research centre Kuwait Institute for Scientific ResearchKuwait CityKuwait Department of Applied Geology Faculty of Engineering and ScienceCurtin University Malaysia.CDT 25098009 MiriSarawakMalaysia

The hydrogeochemical variations in groundwater are mainly influenced by lithology,residence time of water in the aquifer matrix,and anthropogenic *** study was focused on the geochemical variations of groundwater in different lithological units(Archaean,cretaceous,Tertiary,and Quaternary)by understanding the major factors governing the geochemical variations in each *** 71 groundwater samples were collected from these rock types,namely,Archaean(14),cretaceous(37),Tertiary(11),Quaternary(9).The collected samples were measured for major ions and they were used for preparation of standard geochemical plots and ionic *** analysis and factor score were used to identify the major factors controlling the hydrochemistry and their spatial distribution in the study *** addition,geochemical model,WATEQ 4 F was used to determine the saturation condition of carbonate and sulphate minerals in the ***–cl and mixed ca–Na–HcO3 were the dominant hydrochemical facies irrespective of lithological *** overall interpretation of geochemical data revealed that leaching of secondary salts,weathering and ion exchange reaction along the groundwater flow path through various lithological units,and anthropogenic influence from domestic sewages and agricultural activities constitute the major geochemical processes in the study ***,this study brings out the multiple hydrogeochemical process in the complex geological terrain along the cretaceous-Tertiary boundary.

关键词： Groundwater Geochemical process Major ions correlation Factor analysis

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Fluorescent Superlattices of Gold Nanoparticles:A New class of Functional Materials

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Nano Research 2009年第3期2卷 220-234页

作者： Edakkattuparambil Sidharth Shibu Madathumpady Abubaker Habeeb Muhammed keisaku kimura Thalappil pradeep DST Unit on Nanoscience(DST UNS) Department of Chemistry and Sophisticated Analytical Instrument FacilityIndian Institute of TechnologyMadrasChennai 600036India Graduate School of Material Science University of Hyogo3-2-1 KotoKamigori-choAko-gun Hyogo 678-1297Japan

Fluorescent three-dimensional(3-D)superlattices of dansyl glutathione protected gold nanoparticles,with potential applications in molecular detection,have been synthesized at an air/water interface by controlling the pH of the nanoparticle *** number of fluorophores per nanoparticle was calculated to be~*** of the superlattice crystals were examined using scanning electron microscopy(SEM).Most of the crystals observed were triangular in ***-resolution transmission electron microscopy(HRTEM)and small angle X-ray scattering(SAXS)were used to study the packing of nanoparticles in these *** these studies showed that the nanoparticles were arranged in a face-centered cubic(fcc)pattern with a particle-particle distance(center-center)of~10.5 *** of the crystal morphologies with time was also *** fluorescence properties of these triangles were studied using confocal fluorescence imaging and confocal Raman mapping,which were in good agreement with the morphologies observed by *** superlattice exhibits near-infrared(NIR)absorption in the range 1100-2500 *** synthesis of such functional nanoparticle-based solids makes it possible to use them in novel *** utilized the fluorescence of dansyl glutathione gold superlattice crystals for the selective detection of bovine serum albumin(BSA),the major protein constituent of blood plasma,based on the selective binding of the naphthalene ring of the dansyl moiety with site I of BSA.

关键词： Periodic self-assembly dansyl glutathione fluorescent superlattice confocal fluorescence imaging selective binding

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Study of annual mass balance(2011–2013) of Rikha Samba Glacier, Hidden Valley, Mustang, Nepal

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Research in cold and Arid Regions 2016年第4期8卷 311-318页

作者： Sanjaya Gurung Bikas c. Bhattarai Rijan B. kayastha Dorothea Stumm Sharad P. Joshi pradeep k. Mool Himalayan cryosphere Climate and Disaster Research Centre Kathmandu University Dhulikhel 45200 Nepal International centre for Integrated Mountain Development Lalitpur 44700 Nepal

Although Himalayan glaciers are of particular interest in terms of future water supplies, regional climate changes, andsea-level rises, little is known about them due to lack of reliable and consistent data. There is a need for monitoring theseglaciers to bridge this knowledge gap and to provide field measurements necessary to calibrate and validate the resultsfrom different remote sensing operations. Therefore, glaciological observations have been carried out by the cryosphereMonitoring Project （cMP） since September 2011 on Rikha Samba Glacier in Hidden valley, Mustang district in westernNepal in order to study its annual mass balance. This paper presents the first results of that study. There are 10 glaciers inHidden Valley, named G1, G2, G3, up to G10. Of these, G5 is the Rikha Samba Glacier, which has the largest area （5.37km2） in this valley and the highest and lowest altitudes （6,476 and 5,392 m a.s.l., respectively）. The glacier mass balancediscussed in this paper was calculated using the glaciological method and the equilibrium line altitude （ELA）. The glaciershowed a negative annual point mass balance along the longitudinal profile of its lower part from September 10, 2011 toOctober 3, 2012. Stake measurements from October 4, 2012 to September 30, 2013 indicated a negative areal average ofannual mass balance ？0.088±0.019 m w.e. for the whole glacier. Based on these observations, the ELA of the Rikha SambaGlacier is estimated at 5,800 m a.s.l. in 2013. This negative balance may be due to rising air temperatures in the region,which have been incrementally rising since 1980 accompanied by little or no significant increase in precipitation in thatperiod. The negative mass balance confirms the general shrinking trend of the glacier.

关键词： ablation accumulation climate change glacier mass balance Himalayan glacier

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Assessment of Above-and Below-Ground carbon Pools in a Tropical Dry Deciduous Forest Ecosystem of Bhopal, India

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chinese Journal of Urban and Environmental Studies 2020年第4期8卷 60-76页

作者： Subhajit kARMAkAR Bhabani Sankar PRADHAN Ankit BHARDWAJ B.k.PAVAN Rishabh cHATURVEDI pradeep cHAUDHRY Indian Institute of Forest Management

This study estimated 18.35 Mg c/ha in standing biomass of natural forest and 15 Mg c/ha in Hardwickia binata Roxb. plantation in a tropical dry deciduous forest located in the capital city of Madhya Pradesh. The study area of Indian Institute of Forest Management(IIFM), Bhopal,resembled a degraded dry scrubland in 1988 and for over about three decades, the degraded forest recovered remarkably, and ecological processes evolved favorably with canopy cover reaching over 60% in some patches and about 50% in general at most part of the campus. The study was conducted in 18 randomly laid plots in natural forest and over one-acre(0.405-ha) plantation area of Hardwickia binata for assessing the above-ground biomass, below-ground biomass and subsequent carbon content. The lower-diameter classes accounted for the maximum above-ground biomass, basal area and tree density. The forest is predominantly occupied by Leucaena leucocephala, an exotic tree species which showed higher standing biomass carbon storage of 3.79 Mg c/ha followed by Holoptelea integrifolia(2.11 Mg c/ha), Azadirachta indica(1.29 Mg c/ha),Gardenia latifolia(1.26 Mg c/ha) and Lannea coromandelica(1.24 Mg c/ha) besides Hardwickia binata plantation(15 Mg c/ha). It is recommended to plant and promote local native tree species in the urban forests of tropical dry deciduous nature as a means to mitigate climate change effects.

关键词： Above-ground biomass carbon stock basal area urban forest tropical dry deciduous forest carbon dioxide sequestration

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Performance of polymer/cdS organic-inorganic hybrid LEDs

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Optoelectronics Letters 2016年第2期12卷 110-114页

作者： c.pradeep S.Mathew M.A.G.Namboothiry c.P.G.Vallabhan P.Radhakrishnan V.P.N.Nampoori International School of Photonics Cochin University of Science and Technology School of Physics Indian Institute of Science Education and Research Department of Optoelectronics University of Kerala

Organic-inorganic hybrid light emitting diodes(LEDs) were fabricated by incorporating cadmium sulphide(cd S) nanoparticles in hole transporting layer and light emitting materials of a polymer LED. The cd S nanoparticles with size of 10 nm were synthesized by precipitation technique. The LEDs incorporated with the cd S nanoparticles show a reduction in turn on voltage and luminance. When the nanoparticles are incorporated in a suitable fluorene based light emitting polymer, the luminance is increased along with the decrease of turn on voltage.

关键词： inorganic incorporated transporting blend cadmium coated hexagonal filtered adding attributed

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