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Resolving the Colletotrichum siamense species complex using ApMat marker

Fungal Diversity 2015年第2期71卷 247-264页

作者： Gunjan Sharma Anil Kumar Pinnaka belle damodara shenoy Microbial Type Culture Collection and Gene Bank CSIR-Institute of Microbial TechnologySector 39-AChandigarh 160036India Biological Oceanography Division CSIR-National Institute of OceanographyDona PaulaGoa 403004India

Colletotrichum gloeosporioides sensu lato has been associated with anthracnose in diverse commercial *** is now established that *** sensu lato comprises 33 phylogenetic species and *** sensu stricto is not a common pathogen of tropical *** this study,we investigated the phylogenetic relationships of 85 Colletotrichum isolates associated with select tropical fruits and flowering plants from *** the ApMat marker analysis,the 85 isolates clustered with 7 known Colletotrichum species(***,***,***,***,***,***,Glomerella cingulata ***)and six novel *** of the novel lineages is described and illustrated in this paper as Colletotrichum communis ***.,while new-host pathogen associations for ***,***,*** and *** are reported from *** of the 85 isolates analysed in this paper,73 isolates clustered within the *** species complex,indicating that *** species complex,not *** sensu stricto,is common on tropical *** comparison with act,cal,gapdh,ITS and tub2 gene markers,we recommend the use of the ApMat marker for accurate identification of cryptic species within the *** species *** believe that the ApMat marker,in combination with one or two similar‘phylogenetically superior’gene markers,is a better candidate for specieslevel classification of fungi that were traditionally identified as‘Colletotrichum gloeosporioides’.

关键词： Apn2/MAT IGS Ascomycota Pathogenicity testing Phylogeny Tropical crops

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The ApMat marker can resolve Colletotrichum species: a case study with Mangifera indica

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Fungal Diversity 2013年第4期61卷 117-138页

作者： Gunjan Sharma Navinder Kumar Bevan S.Weir Kevin D.Hyde belle damodara shenoy Microbial Type Culture Collection and Gene Bank CSIR-Institute of Microbial TechnologySector 39-AChandigarh 160036India Landcare Research Private Bag 92170AucklandNew Zealand Institute of Excellence in Fungal Research and School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand CSIR-National Institute of Oceanography Dona PaulaGoa 403004India

Anthracnose disease caused by the Colletotrichum gloeosporioides species complex is a major problem *** this study,we investigated the phylogenetic diversity of 207 Indian Colletotrichum isolates,associated with symptomatic and asymptomatic tissues of mango,belonging to this species *** analyses were performed based on a 6-gene dataset(act,cal,chs1,gapdh,ITS and tub2),followed by ApMat *** ApMat-based phylogeny was found to be superior as it provided finer resolution in most of the species-level ***,the ApMat marker identified seven lineages within *** sensu lato,including ***-sambac,***,***,*** sensu stricto and three undesignated,potentially novel *** this study,*** sensu stricto,***,***-sambac,*** and five undesignated,potentially novel lineages were found to be associated with mango *** is a need to develop a consensus among mycologists as to which genes should be used to define and delimit a Colletotrichum species and in the mean time mycologists should voluntarily restrain from describing new species based on inadequate datasets.

关键词： Anthracnose Identification Phylogeny Polyphasic taxonomy Secondary barcode Systematics

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Towards a natural classification and backbone tree for Sordariomycetes

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Fungal Diversity 2015年第3期72卷 199-301页

作者： Sajeewa S.N.Maharachchikumbura Kevin D.Hyde EBGareth Jones Eric H.C.McKenzie Shi-Ke Huang Mohamed A.Abdel-Wahab Dinushani A.Daranagama Monika Dayarathne Melvina J.D’souza Ishani D.Goonasekara Sinang Hongsanan Ruvishika S.Jayawardena Paul M.Kirk Sirinapa Konta Jian-Kui Liu Zuo-Yi Liu Chada Norphanphoun Ka-Lai Pang Rekhani H.Perera Indunil C.Senanayake Qiuju Shang belle damodara shenoy Yuanpin Xiao Ali H.Bahkali Jichuan Kang Sayanh Somrothipol Satinee Suetrong Tingchi Wen Jianchu Xu Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Key Laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina World Agroforestry Centre East and Central Asia132 Lanhei RoadKunming 650201China Institute of Excellence in Fungal Research and School of ScienceMae Fah Luang UniversityChiang Rai 57100Thailand Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box 2455Riyadh 11451Kingdom of Saudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China Guizhou UniversityGuiyang 550025Guizhou ProvincePeople’s Republic of China Department of Botany Faculty of ScienceSohag UniversitySohag 82524Egypt Institute of Marine Biology and Centre of Excellence for the Oceans Taiwan Ocean University2 Pei-Ning RoadKeelung 20224TaiwanRepublic of China Mycology Section Royal Botanic GardensKewLondonUK Microbe Interaction Laboratory(BMIT) National Center for Genetic Engineering and Biotechnology(BIOTEC)113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum ThaniThailand Fungal Diversity Laboratory(BFBD) National Center for Genetic Engineering and Biotechnology(BIOTEC)113 Thailand Science ParkPhahonyothin RoadKhlong NuengKhlong LuangPathum ThaniThailand Biological Oceanography Division CSIR-National Institute of OceanographyDona PaulaGoa 403004India Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo 9 of ShuGuangHuaYuanZhangLuHaidian DistrictBeijing 100097China

Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate *** class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,and fungicolous,lichenized or lichenicolous *** class includes freshwater,marine and terrestrial taxa and has a worldwide *** paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the *** on phylogeny and morphology we introduced three subclasses;Diaporthomycetidae,Lulworthiomycetidae and Meliolomycetidae and five orders;Amplistromatales,Annulatascales,Falcocladiales,Jobellisiales and *** outline is based on literature to the end of 2014 and the backbone tree published in this *** for 397 taxa with information,such as new family and genera novelties,novel molecular data published since the Outline of Ascomycota 2009,and new links between sexual and asexual genera and thus synonymies,are *** Sordariomycetes now comprises six subclasses,28 orders,90 families and 1344 *** addition a list of 829 genera with uncertain placement in Sordariomycetesis also provided.

关键词： Boliniales Calosphaeriales Chaetosphaeriales Coniochaetales Coronophorales Diaporthales Glomerellales Hypocreomycetidae Hypocreales Koralionastetales Lulworthiales Magnaporthales Melanosporales Meliolales Microascales Molecular identification Nomenclature Ophiostomatales Phyllachorales Sordariales Sordariomycetidae Taxonomy Trichosphaeriales Type species Xylariales Xylariomycetidae

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Fungal diversity notes 1–110:taxonomic and phylogenetic contributions to fungal species

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Fungal Diversity 2015年第3期72卷 1-197页

作者： Jian Kui Liu Kevin D.Hyde E.B.Gareth Jones Hiran A.Ariyawansa Darbhe J.Bhat Saranyaphat Boonmee Sajeewa S.N.Maharachchikumbura Eric H.C.McKenzie Rungtiwa Phookamsak Chayanard Phukhamsakda belle damodara shenoy Mohamed A,Abdel-Wahab Bart Buyck Jie Chen K.W.Thilini Chethana Chonticha Singtripop Dong Qin Dai Yu Cheng Dai Dinushani ADaranagama Asha J.Dissanayake Mingkwan Doilom Melvina J.D’souza Xin Lei Fan Ishani DGoonasekara Kazuyuki Hirayama Sinang Hongsanan Subashini C.Jayasiri Ruvishika S.Jayawardena Samantha C.Karunarathna Wen Jing Li Ausana Mapook Chada Norphanphoun Ka Lai Pang Rekhani H.Perera Derek Peršoh Umpava Pinruan Indunil CSenanayake Sayanh Somrithipol Satinee Suetrong Kazuaki Tanaka Kasun M.Thambugala Qing Tian Saowaluck Tibpromma Danushka Udayanga Nalin N.Wijayawardene Dhanuska Wanasinghe Komsit Wisitrassameewong Xiang Yu Zeng Faten AAbdel-Aziz Slavomir Adamčík Ali H.Bahkali Nattawut Boonyuen Timur Bulgakov Philippe Callac Putarak Chomnunti Katrin Greiner Akira Hashimoto Valerie Hofstetter Ji Chuan Kang David Lewis Xing Hong Li Xing Zhong Liu Zuo Yi Liu Misato Matsumura Peter E.Mortimer Gerhard Rambold Emile Randrianjohany Genki Sato Veera Sri-Indrasutdhi Cheng Ming Tian Annemieke Verbeken Wolfgang von Brackel Yong Wang Ting Chi Wen Jian Chu Xu Ji Ye Yan Rui Lin Zhao Erio Camporesi Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouChina Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanChina Institute of Excellence in Fungal Research and School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Department of Botany and Microbiology King Saudi UniversityRiyadhSaudi Arabia Manaaki Whenua Landcare Research Private Bag 92170AucklandNew Zealand Formerly Department of Botany Goa UniversityGoaIndia No.128/1–J Azad Housing SocietyCurcaGoa VelhaIndia Muséum national d’histoire naturelle Dépt.Systématique etévolutionUMR 720575005 ParisFrance Institute of Microbiology&Beijing Key Laboratory for Forest Pest Control Beijing Forestry UniversityPO Box 61Beijing 100083China Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesNo.9 of Shu Guang Hua Yuan Zhong LuHaidian DistrictBeijing 10097China The Key Laboratory for Silviculture and Conservation of Ministry of Education Beijing Forestry UniversityBeijing 100083China Mycology University of BayreuthUniversitätsstraße 3095440 BayreuthGermany The United Graduate School of Agricultural Sciences Iwate University18-8 Ueda 3 chomeMorioka 020-8550Japan Apple Experiment Station Aomori Prefectural Agriculture and Forestry Research Center24 FukutamiBotandairaKuroishiAomori 036-0332Japan Department of Plant Protection Agroscope Changins-Wadenswil Research Station ACWRte de Duiller1260 NyonSwitzerland Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box:2455Riyadh 1145Saudi Arabia Department of Botany Faculty of ScienceSohag UniversitySohagEgypt Institute of Botany Slovak Academy of SciencesDúbravskácesta 984523 BratislavaSlovakia Hirosaki University Bleakwood262 CR 3062NewtonTexas 75966USA Faculty of Agriculture and Life Sciences Hirosaki University3 Bunkyo-choHirosakiAomori

This paper is a compilation of notes on 110 fungal taxa,including one new family,10 new genera,and 76 new species,representing a wide taxonomic and geographic *** new family,Paradictyoarthriniaceae is introduced based on its distinct lineage in Dothideomycetes and its unique *** family is sister to Biatriosporaceae and *** new genera are Allophaeosphaeria(Phaeosphaeriaceae),Amphibambusa(Amphisphaeriaceae),Brunneomycosphaerella(Capnodiales genera incertae cedis),Chaetocapnodium(Capnodiaceae),Flammeascoma(Anteagloniaceae),Multiseptospora(Pleosporales genera incertae cedis),Neogaeumannomyces(Magnaporthaceae),Palmiascoma(Bambusicolaceae),Paralecia(Squamarinaceae)and Sarimanas(Melanommataceae).The newly described species are the Ascomycota Aliquandostipite manochii,Allophaeosphaeria dactylidis,***,Alternaria cesenica,Amphibambusa bambusicola,Amphisphaeria sorbi,Annulohypoxylon thailandicum,Atrotorquata spartii,Brunneomycosphaerella laburni,Byssosphaeria musae,Camarosporium aborescentis,***,***,Chaetocapnodium siamensis,Chaetothyrium agathis,Colletotrichum sedi,Conicomyces pseudotransvaalensis,Cytospora berberidis,***,Diaporthe thunbergiicola,Diatrype palmicola,Dictyosporium aquaticum,***,***,Didymella cirsii,Dinemasporium nelloi,Flammeascoma bambusae,Kalmusia italica,***,Keissleriella sparticola,Lauriomyces synnematicus,Leptosphaeria ebuli,Lophiostoma pseudodictyosporium,***,Lophiotrema eburnoides,Montagnula graminicola,Multiseptospora thailandica,Myrothecium macrosporum,Natantispora unipolaris,Neogaeumannomyces bambusicola,Neosetophoma clematidis,***,Oxydothis atypica,Palmiascoma gregariascomum,Paraconiothyrium nelloi,***,Paradictyoarthrinium tectonicola,Paralecia pratorum,Paraphaeosphaeria spartii,Pestalotiopsis digitalis,***,***,Phaeoisaria pseudoclematidis,Phragmocapnias philippinensis,Pseudocamarosporium cotinae,Pseudocercospora tam

关键词： Ascomycota Basidiomycota Global Taxonomy Initiative Phylogeny Taxonomy

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