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Walking the thin line…ten years later:the dilemma of aboveversus below-ground features to support phylogenies in the Russulaceae(Basidiomycota)

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Fungal Diversity 2018年第2期89卷 267-292页

作者： bart buyck Stefan Zoller Valerie Hofstetter Museum national d’histoire naturelle Departement Systematique et OriginesCP 39Institut pour la SystematiqueEvolutionBiodiversiteSorbonne UniversiteUMR 7205 CNRS MNHN UPMC EPHE12 Rue Buffon75005 ParisFrance Department of Environmental Systems Science Genetic Diversity CentreETH ZurichCHN E 55Universitatstrasse 168092 ZurichSwitzerland Department of Plant Protection Agroscope ChanginsWadenswil Research StationACWRte de Duiller1260 NyonSwitzerland

For the very first time,morpho-anatomical features of both fruiting bodies as well as below-ground structures have been confronted with a newly produced multigene phylogeny of root symbiotic basidiomycetes using one of the most speciose genera of ectomycorrhizal fungi(Russula,Russulales)as an *** this first of two papers,the authors focus more specifically on below-ground *** five-gene phylogeny divides the genus in five main clades,here interpreted as representing seven subgenera,all significantly *** more conserved than features of fruiting bodies,the anatomy of ectomycorrhiza does not allow for an unambiguous characterization of the main clades resolved by phylogenetic analysis,but the anatomy of ectomycorrhiza performs better to naturally classify the species of this *** of fruiting bodies remain much more adequate for the delimitation of terminal clades and are irreplaceable for morphological species *** taxa mostly nest in ancient lineages,but are also present in some terminal clades of otherwise temperate species *** shift from plectenchymatic to pseudoparenchymatic ECM outer mantle structures happened most likely already in the paleotropics,and is here hypothesized to have facilitated a major diversification of the genus with new hosts in the northern *** data as well as our own observations on below ground structures of several Lactifluus species suggests that this genus shares with Russula the absence of lactifers in ECM mantles and rhizomorphs,contrary to species of Lactarius where lactifers are always *** observations on rhizomorphs of species in Multifurca confirm the presence of vessel-like and ladder-like hyphae,also found in the other agarioid genera of this family,while distinct lactifers are only present in the lactarioid,but not in russuloid members of this genus.

关键词： Ectomycorrhizal anatomy Lactifluus Multifurca Multigene phylogeny Rhizomorphs

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Molecular evidence for novel Cantharellus (Cantharellales, Basidiomycota) from tropical African miombo woodland and a key to all tropical African chanterelles

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Fungal Diversity 2013年第1期58卷 281-298页

作者： bart buyck Frank Kauff Corinne Cruaud Valérie Hofstetter Département Systématique etévolution UMR7205Muséum National d’Histoire NaturelleCP39Rue Buffon 1275005 ParisFrance Fachbereich Biologie Abt.Molekulare PhylogenetikTechnische Universität KaiserslauternPostfach 304967653 KaiserslauternGermany Centre national de séquençage Genoscope2 rue Gaston-CrémieuxCP 570691057 Evry cedexFrance Department of plant protection Agroscope Changins-Wädenswil Research Station ACWRte De Duiller1260 NyonSwitzerland

The authors present a combined morphological and molecular approach of the genus Cantharellus in *** descriptions and detailed illustrations are provided for five new species from the Zambezian savannah woodlands in tropical Africa:***,***,***,*** and ***.A maximum likelihood analysis of tef-1 sequences obtained for 83 collections of Cantharellus that are representative of all major groups in world wide Cantharellus,places a total of 13 African chanterelles,including the five newly described *** recognition of a separate genus Afrocantharellus is *** identification key based on the re-examination of all existing type material is provided for all presently known African Cantharellus.

关键词： Afrocantharellus Biodiversity Guineocongolian rain forest Identification key Phylogeny Tanzania Zambezian woodlands

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Sequence data reveal a high diversity of Cantharellus associated with endemic vegetation in Madagascar

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Fungal Diversity 2015年第1期70卷 189-208页

作者： bart buyck Frank Kauff Emile Randrianjohany Valérie Hofstetter Muséum National d’Histoire Naturelle Dépt.Systématique et Evolution CP39UMR 720575005 ParisFrance Fachbereich Biologie Abt.Molekulare PhylogenetikTechnische Universität KaiserslauternPostfach 304967653 KaiserslauternGermany Centre National de Recherche sur l’Environnement(CNRE) BP 1739Lab.de Microbiologie de l’Environnement(LME)AntananarivoMadagascar Department of plant protection Agroscope Changins-Wädenswil Research Station ACWRte De Duiller1260 NyonSwitzerland

This revision of Cantharellus in Madagascar deals with species that are associated with strictly endemic host trees and *** on morphological differences and molecular sequence data of the tef-1 gene,five new species are proposed(***,***,***,*** and ***),as well as one new subspecies,*** ***,whereas *** and *** *** are epitypified.A key is provided to all Cantharellus that grow with native vegetation in Madagascar.

关键词： Biodiversity Cantharellales Identification key New species Phylogeny Taxonomy Transcription elongation factor 1alpha

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The unbearable lightness of sequenced-based identification

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Fungal Diversity 2019年第3期96卷 243-284页

作者： Valerie Hofstetter bart buyck Guillaume Eyssartier Sylvain Schnee Katia Gindro Departement federal del’economie de la formation et de la recherche DEFRRoutede Duillier 60CP10121260 Nyon 1Switzerland Institut de Systematique EvolutionBiodiversite(ISYEB-UMR 7205)Museum Nationald’Histoire NaturelleSorbonne UniversiteCNRSCP3912 Rue Buffon75005 ParisFrance Perigueux France

Using the basic GenBank local alignment search tool program(BLAST)to identify fungi collected in a recently protected beech forest at Montricher(Switzerland),the number of ITS sequences associated to the wrong taxon name appears to be around 30%,even higher than previously *** results rely on the in-depth re-examination of BLAST results for the most interesting species that were collected,*** records for Switzerland,rare or patrimonial species and problematic species(when BLAST top scores were equally high for different species),all belonging to *** paper dissects for the first time a number of sequence-based identifications,thereby showing in every detail—particularly to the user community of taxonomic information—why sequence-based identification in the context of a fungal inventory can easily go *** first conclusion is that in-depth examination of BLAST results is too time consuming to be considered as a routine approach for future inventories:we spent two months on verification of approx.20 *** from the fact that poor taxon coverage in public depositories remains the principal impediment for successful species identification,it can be deplored that even very recent fungal sequence deposits in GenBank involve an uncomfortably high number of misidentifications or errors with associated *** checking the original publications associated with top score sequences for the few examples that were here re-examined,a positive consequence is that we uncovered over 80 type sequences that were not annotated as types in *** and pitfalls of sequence-based identification are discussed,particularly in the light of undertaking fungal *** are made to avoid or reduce some of the major problems with sequence-based ***,the prospects for a more reliable sequence-based identification of fungi remain quite dim,unless authors are ready to check and update the

关键词： Fungal inventory GenBank Nuclear ribosomal DNA internal transcribed spacers(ITS) Switzerland Type sequence

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A multilocus phylogeny for worldwide Cantharellus (Cantharellales, Agaricomycetidae)

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Fungal Diversity 2014年第1期64卷 101-121页

作者： bart buyck Frank Kauff Guillaume Eyssartier AndréCouloux Valérie Hofstetter Départment systématique etévolution CP39 UMR 7205Muséum national d’histoire naturelle75005 ParisFrance Fachbereich Biologie Abt.Molekulare PhylogenetikTechnische Universität KaiserslauternPostfach 304967653 KaiserslauternGermany 78 boulevard Stalingrad24000 PérigueuxFrance Centre national de séquençage Genoscope2 rue Gaston-CrémieuxCP 570691057 Evry cedexFrance Department of Plant Protection Agroscope Changins-Wädenswil Research Station ACWRte De Duiller1260 NyonSwitzerland

After a short historical overview of past systematic studies on Cantharellus,discussing delimitation and species diversity of the genus as well as previous,morphology-based,infrageneric classifications,this paper presents the first molecularly-based infrageneric classification of this genus using a multigene phylogenetic approach(nucLSU,mitSSU,RPB2 and tef-1)on a dataset that covers approximately halve of the described chanterelles worldwide,including many type *** subgenera are recognized and the recognition of subgenus Afrocantharellus as a separate genus is not *** taxonomic value of individual morphological features is discussed as challenged by this new multigene phylogeny which comprises five new sections,one new subgenus and many emendations for previously recognized infrageneric *** paper discusses the observed discrepancy in biodiversity of Cantharellus when comparing between studies that focus either on below-or above-ground presence.A preliminary biogeographic hypothesis suggests an‘out of Africa’Gondwanan origin as a result of vicariance and subsequent migrations.

关键词： Biogeography Ectomycorrhiza Gondwana mitSSU nucLSU RPB2 tef-1 Systematics

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Myxomycetes from Papua New Guinea and New Caledonia

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Fungal Diversity 2013年第2期59卷 33-44页

作者： Henrik Kylin David W.Mitchell El-Hacène Seraoui bart buyck Department of Water and Environmental Studies Linköping UniversitySE-58183 LinköpingSweden Walton Cottage Upper HartfieldEast SussexTN74ANEnglandUK 11 rue Louis Armand74100 AmbillyFrance Department of Systematics and Evolution CP39 UMR7205Muséum national d’Histoire naturelle75005 ParisFrance

We present a compilation of all myxomycetes recorded from Papua New Guinea(PNG)and New Caledonia(NC).Specimens were collected during field trips in September 1983–January 1984 to both territories and in August 1991,October 2007,and April 2009 to *** and dung samples for moist chamber cultures were collected during the field trips in September 1983–January 1984(PNG and NC)and in August 1991 and October 2007(NC).In addition,information from previous publications and unpublished specimens in the herbarium at the Plant Protection Instituted in Port Moresby,PNG,are included.A total of 180 species are *** the 63 species from PNG 51 are new to the country,and 123 of the 149 species from NC are new to the territory.

关键词： Mycetozoa Myxomycota Amoebozoa Slime moulds Southwest Pacific

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What if esca disease of grapevine were not a fungal disease?

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Fungal Diversity 2012年第3期54卷 51-67页

作者： Valérie Hofstetter bart buyck Daniel Croll Olivier Viret Arnaud Couloux Katia Gindro Agroscope Changins-Wädenswil(ACW) Plant Protection Field Crops and Grapevine/Viticulture and EnologyCP10121260 Nyon1Switzerland Muséum National d’Histoire Naturelle Dépt.Systématique etévolutionCP 39UMR 720557 rue Cuvier75231 Paris cedex 05France Plant Pathology Institute for Integrative BiologyETH Zurich8092 ZurichSwitzerland Centre national de séquençage Genoscope2 rue Gaston-CrémieuxCP 570691057 Evry cedexFrance

Esca disease,which attacks the wood of grapevine,has become increasingly devastating during the past three decades and represents today a major concern in all wine-producing *** disease is attributed to a group of systematically diverse fungi that are considered to be latent pathogens,however,this has not been conclusively *** study presents the first in-depth comparison between the mycota of healthy and diseased plants taken from the same vineyard to determine which fungi become invasive when foliar symptoms of esca *** unprecedented high fungal diversity,158 species,is here reported exclusively from grapevine wood in a single Swiss vineyard *** identical mycota inhabits wood of healthy and diseased adult plants and presumed esca pathogens were widespread and occurred in similar frequencies in both plant *** esca-associated fungi are not transmitted from adult to nursery plants through the grafting *** the presumed esca-associated fungal pathogens are most likely saprobes decaying already senescent or dead wood resulting from intensive pruning,frost or other mecanical injuries as *** cause of esca disease therefore remains elusive and requires well executive scientific *** results question the assumed pathogenicity of fungi in other diseases of plants or animals where identical mycota are retrieved from both diseased and healthy individuals.

关键词： Fungal community Vitis vinifera Esca disease ITS based fungal identification Fungal pathogens

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Cantharellus(Cantharellales,Basidiomycota)revisited in Europe through a multigene phylogeny

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Fungal Diversity 2017年第2期83卷 263-292页

作者： Ibai Olariaga Gabriel Moreno Jose Luis Manjon Isabel Salcedo Valerie Hofstetter Diego Rodrıguez bart buyck Department of Life Sciences(Botany) University of Alcala28805 Alcalade HenaresMadridSpain Department of Plant Biology and Ecology(Botany) University of the Basque Country(UPV/EHU)Apdo 64448080 BilbaoSpain Department of Plant Protection Agroscope ChanginsWadenswil Research StationACWRte de Duiller1260 NyonSwitzerland Kherdzmari St.Microdistrict 11.Block 58 Flat 69TemkaTbilisiGeorgia Departement Systematique et Evolution CP 39ISYEBUMR 7205 CNRS MNHN UPMC EPHEMuseum National d’Histoire Naturelle12 Rue Buffon75005 ParisFrance

Resolving species delimitation issues of European Cantharellus is crucial to correctly name chanterelles around the *** names referring to Cantharellus *** been described in Europe,some of which are used in other *** on combined analyses of ITS2,LSU,RPB2 and TEF-1,merely eight species are here recognized in Europe applying the genealogical concordance phylogenetic species recognition criteria,one of which,***,is described as ***logical characters used in species delimitation are mapped and their variability *** colour of the hymenophore in young specimens is found to be a rather constant morphological character of taxonomic *** species of Cantharellus are morphologically distinguished by unique combinations of characters,such as the presence of a pink pileal coating,pileus and hymenophore colour when young,and in some cases,the mean spore length and *** type specimens from Europe are *** on revised species concepts sixteen novel taxonomic synonyms are here proposed for European chanterelles:***(=***,***,***),***(=*** ***,*** ***,***),***(=*** ***,***),***(=*** ***),***(=***),***(=*** ***,*** ***,***),and ***sianus(=***,***,***nesianus ***).The type of Cantharellus,***,is ***,colour illustrations and a key to all European species are provided.

关键词： Cantharelloid clade Cantharellaceae Epitype Edible fungi Genealogical concordance Species delimitation

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Species diversity of Basidiomycota

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Fungal Diversity 2022年第3期114卷 281-325页

作者： Mao-Qiang He Rui-Lin Zhao Dong-Mei Liu Teodor T.Denchev Dominik Begerow Andrey Yurkov Martin Kemler Ana M.Millanes Mats Wedin A.R.McTaggart Roger G.Shivas bart buyck Jie Chen Alfredo Vizzini Viktor Papp Ivan V.Zmitrovich Naveed Davoodian Kevin D.Hyde State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesBeijing 100101People’s Republic of China College of Life Sciences University of Chinese Academy of SciencesHuairou DistrictBeijing 100408People’s Republic of China Institute of Ecology Chinese Reserach Academy of Environmental SciencesBeijing 100012People’s Republic of China Institute of Biodiversity and Ecosystem Research Bulgarian Academy of Sciences2 Gagarin St.1113 SofiaBulgaria Evolution der Pflanzen und Pilze Ruhr-Universität BochumND 03Universitätsstr.15044801 BochumGermany Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures Inhoffenstraße 7B38124 BraunschweigGermany Departamento de Biología y Geología Física y Química InorgánicaUniversidad Rey Juan Carlos28933 MóstolesSpain Department of Botany Swedish Museum of Natural HistoryP.O.Box 5000710405 StockholmSweden Queensland Alliance for Agriculture and Food Innovation The University of QueenslandBrisbane 4001Australia Centre for Crop Health University of Southern QueenslandToowoomba 4350Australia Institut pour Systematique EcologieBiodiversite(ISYEBUMR 7205)Sorbonne universitéMuséum National d’Histoire Naturelle CP 39CNRSDépartement Origines et Evolution12 Rue Buffon75005 ParisFrance Facultad de Ciencias Biológicas y Agropecuarias PeñuelaUniversidad VeracruzanaAmatlán de los Reyes94945 VeracruzMéxico Dipartimento di Scienze della Vita e Biologia dei Sistemi Universitàdi TorinoViale P.A.Mattioli 2510125 TorinoItaly Department of Botany Hungarian University of Agriculture and Life Sciences1518 BudapestHungary Komarov Botanical Institute Russian Academy of SciencesProfessor Popov st.2Saint PetersburgRussia 197376 Royal Botanic Gardens Victoria Birdwood AvenueMelbourneVIC 3004Australia Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of Science

Fungi are eukaryotes that play essential roles in *** fungi,Basidiomycota is one of the major phyla with more than 40,000 described *** review species diversity of Basidiomycota from five groups with different lifestyles or habitats:saprobic in grass/forest litter,wood-decaying,yeast-like,ectomycorrhizal,and plant *** studies of Agaricus,Cantharellus,Ganoderma,Gyroporus,Russula,Tricholoma,and groups of lichenicolous yeast-like fungi,rust fungi,and smut fungi are used to determine trends in discovery of *** each case study,the number of new species published during 2009–2020 is analysed to determine the rate of *** rates differ between taxa and reflect different states of progress for species discovery in different *** results showed that lichenicolous yeast-like taxa had the highest publication rate for new species in the past two decades,and it is likely this trend will continue in the next *** species discovery rate of plant parasitic basidiomycetes was low in the past ten years,and remained constant in the past 50 *** also found that the establishment of comprehensive and robust taxonomic systems based on a joint global initiative by mycologists could promote and standardize the recognition of *** estimated that more than 54,000 species of Basidiomycota will be discovered by 2030,and estimate a total of 1.4–4.2 million species of Basidiomycota *** numbers illustrate a huge gap between the described and yet unknown diversity in Basidiomycota.

关键词： Biodiversity Fungi Species number Taxonomy

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The numbers of fungi:are the most speciose genera truly diverse?

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Fungal Diversity 2022年第3期114卷 387-462页

作者： Chitrabhanu S.Bhunjun Tuula Niskanen Nakarin Suwannarach Nopparat Wannathes Yi-Jyun Chen Eric H.C.McKenzie Sajeewa S.N.Maharachchikumbura bart buyck Chang-Lin Zhao Yu-Guang Fan Jing-Yi Zhang Asha J.Dissanayake Diana S.Marasinghe Ruvishika S.Jayawardena Jaturong Kumla Mahajabeen Padamsee Ya-Ya Chen Kare Liimatainen Joseph F.Ammirati Chayanard Phukhamsakda Jian-Kui Liu Wiphawanee Phonrob Émile Randrianjohany Sinang Hongsanan Ratchadawan Cheewangkoon Digvijayini Bundhun Surapong Khuna Wen-Jie Yu Lun-Sha Deng Yong-Zhong Lu Kevin D.Hyde Saisamorn Lumyong Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Jodrell Laboratory Royal Botanic GardensKewSurrey TW93ABUK Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Research Center of Microbial Diversity and Sustainable Utilization Chiang Mai UniversityChiang Mai 50200Thailand Microbiology Program Faculty of Science and TechnologyPibulsongkram Rajabhat UniversityPhitsanulok 65000Thailand Manaaki Whenua-Landcare Research Private Mail Bag 92170AucklandNew Zealand School of Life Science and Technology University of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Institut de Systématique EvolutionBiodiversité(ISYEB)Muséum National d’Histoire naturelleCNRSSorbonne UniversitéEPHEUniversitédes Antilles57 rue CuvierCP 3975231 Paris cedex 05France College of Biodiversity Conservation Southwest Forestry UniversityKunming 650224People’s Republic of China Key Laboratory of Tropical Translational Medicine of Ministry of Education Tropical Environment and Health LaboratoryCollege of PharmacyHainan Medical UniversityHaikou 571199People’s Republic of China Institute of Crop Germplasm Resources Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006People’s Republic of China School of Food and Pharmaceutical Engineering Guizhou Institute of TechnologyGuiyang 550003People’s Republic of China Centre National de Recherche sur l’Environnement(CNRE) BP 1739Laboratoire de Microbiologie de l’Environnement(LME)AntananarivoMadagascar Department of Biology University of WashingtonBox 351800SeattleWA 98195-1800USA College of Plant Protection Jilin Agricultural UniversityChangchun 130118JilinPeople’s Republic of China Engineering Research Center of Chinese Ministry of Education for Edible and

Fungi play vital roles in ecosystems as endophytes,pathogens and *** current estimate of fungal diversity is highly uncertain,ranging from 1.5 to 12 million,but only around 150,000 species have been named and classified to *** the introduction of DNA based methods for species identification,the number of newly described taxa has increased from approximately 1000 to around 2000 *** demonstrates the importance of DNA based methods to identify and distin-guish species,especially cryptic *** novel species from recent studies have been found in historically understudied regions and habitats,but these still represent only a small percentage of the estimated *** this paper,we examine 16 genera from the top 40 most speciose genera as listed in Species Fungorum as case studies to examine the diversity of taxa in each *** genera treated herein are Cercospora,Diaporthe,Meliola,Passalora,Phyllachora,Phyllosticta,Pseudocer-cospora,Ramularia(ascomycetes)and Cortinarius,Entoloma,Inocybe,Marasmius,Psathyrella,Puccinia,Russula,Uromyces(basidiomycetes).We critically evaluate the number of species in these genera and correlate these numbers with the number of entries in *** introduce 18 new species Apiospora multiloculata,Candolleomyces thailandensis,Cortinarius acutoproximus,Cortinarius melleoalbus,Cortinarius pacificus,Cortinarius parvoacetosus,Diaporthe guizhouensis,Entoloma pseudosubcorvinum,Inocybe meirensongia,Marasmius albulus,Marasmius obscuroaurantiacus,Meliola camporesii,Phyl-lachora siamensis,Phyllosticta doitungensis,Picipes yuxiensis,Pseudocercospora vignae,Puccinia maureanui and Russula *** also introduce a new record of Candolleomyces cladii-marisci and Inocybe *** discuss the genera Colletotrichum and Pleurotus that are speciose,but do not occur in the top *** hypothesize whether there might be more species in these genera and discuss why these genera have some of the largest number of specie

关键词： 18 new taxa Ascomycota Basidiomycota Fungal diversity Host-specificity Taxonomy

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