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Taxonomic dependency and spatial heterogeneity in assembly mechanisms of bacteria across complex coastal waters

Ecological Processes 2024年第1期13卷 80-97页

作者： Huizhen Yan Dandan Lin Gaoke Gu Yujie Huang Xuya Hu Zhenhao Yu Dandi Hou Demin Zhang barbara j.campbell Kai Wang State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products School of Marine SciencesNingbo University Key Laboratory of Marine Biotechnology of Zhejiang Province School of Marine Sciences Ningbo University Department of Biological Sciences Clemson University

Background Understanding community assembly mechanisms across taxa and space is fundamental for microbial ecology. However, the variability and determinants of assembly processes over taxa and space remain unclear. Here, we investigated taxonomic dependency and spatial heterogeneity in bacterial assembly mechanisms across coastal waters in the East China Sea using neutral and null models with customized visualization *** Overall, bacterial assembly mechanisms varied across broad taxonomic groups(phyla and proteobacterial classes) and space at the regional scale. A determinism–stochasticity balanced mechanism governed total bacterial assembly, while taxonomic dependency existed in assembly mechanisms and ecological processes. Among community ecological features, niche breadth and negative-to-positive cohesion ratio were strongly associated with the determinism-to-stochasticity ratio of bacterial groups. Bacterial assembly mechanisms commonly exhibited spatial heterogeneity, the extent and determinants of which varied across taxonomic groups. Spatial assembly of total bacteria was directly driven by many environmental factors and potential interactions between taxa, but not directly by geographic factors. Overall, the bacterial groups with higher spatial heterogeneity in assembly mechanisms were more related to environmental and/or geographic factors(except Bacteroidetes), while those with lower heterogeneity were more related to ecological *** Our results confirm the pervasiveness of taxonomic dependency and spatial heterogeneity in bacterial assembly, providing a finer understanding about regulation across complex coastal waters.

关键词： Bacterioplankton Assembly mechanism Niche breadth Null model Environmental gradient Biogeography

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Older Adult Compendium of Physical Activities:Energy costs of human activities in adults aged 60 and older

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journal of Sport and Health Science 2024年第1期13卷 13-17,F0003页

作者： Erik A.Willis Stephen D.Herrmann Mary Hastert Chelsea L.Kracht Tiago V.Barreira john M.Schuna jr. Zhenghua Cai Minghui Quan Scott A.Conger Wendy j.Brown barbara E.Ainsworth Center for Health Promotion and Disease Prevention University of North Carolina at Chapel HillChapel HillNC 27599USA Kansas Center for Metabolism and Obesity Research The University of Kansas Medical CenterKansas CityKS 66160USA Division of Physical Activity and Weight Management Department of Internal MedicineUniversity of Kansas Medical CenterKansas CityKS 66160USA Clinical Science Division Pennington Biomedical Research CenterBaton RougeLA 70808USA Exercise Science Department Syracuse UniversitySyracuseNY 13244USA School of Exercise&Sport Science Oregon State UniversityCorvallisOR 97331USA School of Exercise and Health Shanghai University of SportShanghai 200438China Department of Kinesiology Boise State UniversityBoiseID 83725USA School of Human Movement and Nutrition Sciences The University of QueenslandSt.LuciaQLD 4072Australia Faculty of Health Sciences and Medicine Bond UniversityGold CoastQLD 4229Australia College of Health Solutions Arizona State UniversityPhoenixAZ 85003USA

Purpose:To describe the development of a Compendium for estimating the energy costs of activities in adults>60 years(OA Compendium).Methods:Physical activities(PAs)and their metabolic equivalent of task(MET)values were obtained from a systematic search of studies published in 4 sport and exercise databases(PubMed,Embase,SPORTDiscus(EBSCOhost),and Scopus)and a review of articles included in the 2011 Adult Compendium that measured PA in older *** values were computed as the oxygen cost(VO_(2),mL/kg/min)during PA divided by 2.7 m L/kg/min(MET_(60+))to account for the lower resting metabolic rate in older ***:We identified 68 articles and extracted energy expenditure data on 427 *** these,we derived 99 unique Specific Activity codes with corresponding MET_(60+)values for older *** developed a website to present the OA Compendium MET_(60+)values:https://***:The OA Compendium uses data collected from adults>60 years for more accurate estimation of the energy cost of PAs in older *** is an accessible resource that will allow researchers,educators,and practitioners to find MET_(60+)values for older adults for use in PA research and practice.

关键词： Energy expenditure Exercise MET Older adults

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Ca^(2+) binding to the C_(2)E domain of otoferlin is required for hair cell exocytosis and hearing

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Protein & Cell 2024年第4期15卷 305-312页

作者： Han Chen Mehar Monga Qinghua Fang Loujin Slitin jakob Neef Shashank S.Chepurwar Regina Célia Mingroni Netto Karina Lezirovitz Alfredo Tabith,jr. Fritz Benseler Nils Brose Kathrin Kusch Carolin Wichmann Nicola Strenzke barbara Vona julia Preobraschenski Tobias Moser Institute for Auditory Neuroscience and InnerEarLab University Medical Center Göttingen37075 GöttingenGermany Collaborative Research Center 889 University of Göttingen37075 GöttingenGermany Auditory Neuroscience and Synaptic Nanophysiology Group Max Planck Institute for Multidisciplinary Sciences37075 GöttingenGermany Göttingen Graduate Center for Neurosciences Biophysics and Molecular BiosciencesUniversity of Göttingen37075 GöttingenGermany Biochemistry of Membrane Dynamics Group Institute for Auditory NeuroscienceUniversity Medical Center Göttingen37075 GöttingenGermany Molecular Architecture of Synapses Group Institute for Auditory Neuroscience and InnerEarLabUniversity Medical Center Göttingen37075 GöttingenGermany Center for Biostructural Imaging of Neurodegeneration University Medical Center Göttingen37075 GöttingenGermany Auditory Systems Physiology Group Institute for Auditory Neuroscience and InnerEarLabUniversity Medical Center Göttingen37075 GöttingenGermany Departamento de Genética e Biologia Evolutiva Centro de Pesquisas sobre o Genoma Humano e Células-TroncoInstituto de BiociênciasUniversidade de São PauloSão Paulo 05508-220Brazil Laboratório de Otorrinolaringologia/LIM32 Faculdade de MedicinaHospital das ClínicasUniversidade de São PauloSão PauloSP 05508-220Brazil DERDIC Pontifícia Universidade Católica de São PauloSão Paulo 05508-220Brazil Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences37075 GöttingenGermany Multiscale Bioimaging Cluster of Excellence(MBExC) University of Göttingen37075 GöttingenGermany Functional Auditory Genomics Group Auditory Neuroscience and Optogenetics LaboratoryGerman Primate Center37077 GöttingenGermany Hearing Genomics Group Institute for Auditory Neuroscience and InnerEarLabUniversity Medical Center Göttingen37075 GöttingenGermany Institute of Human Genetics University Medical Center Göttingen37075 GöttingenGermany

Dear Editor,Afferent synapses of cochlear inner hair cells(IHCs)employ a unique molecular machinery(see extended background in Supplementary Materials).Otoferlin is a key player in this machinery and its defects cause human auditory synaptopathy(Moser and Starr,2016).Otoferlin,a tail-anchored(Vogl et al.,2016)multi-C_(2)-domain protein(Fig.1Ai)specific to hair cells(Roux et al.,2006),is a member of the ferlin protein family involved in membrane trafficking and repair that are of major disease relevance(Pangršičet al.,2012),also see Supplementary *** is distributed broadly within IHCs(Fig.2Ai-Aiii;Pangrsic et al.,2010;Roux et al.,2006).

关键词： auditory hair

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Universal insertion of molecules in ionic compounds under pressure

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National Science Review 2024年第1期11卷 120-128页

作者： Feng Peng Yanming Ma Chris j.Pickard Hanyu Liu Maosheng Miao College of Physics and Electronic Information Luoyang Normal University Department of Chemistry and Biochemistry California State University Northridge State Key Laboratory of Superhard Materials & Key Laboratory of Material Simulation Methods and Software of Ministry of Education College of Physics Jilin University International Center of Future Science Jilin University Department of Materials Science & Metallurgy University of Cambridge Advanced Institute for Materials Research Tohoku University Department of Earth Science University of California Santa Barbara

Using first-principles calculations and crystal structure search methods, we found that many covalently bonded molecules such as H2, N2, CO2, NH3, H2O and CH4may react with NaC l, a prototype ionic solid,and form stable compounds under pressure while retaining their molecular structure. These molecules,despite whether they are homonuclear or heteronuclear, polar or non-polar, small or large, do not show strong chemical interactions with surrounding Na and Cl ions. In contrast, the most stable molecule among all examples, N2, is found to transform into cyclo-N5-anions while reacting with NaC l under high pressures. It provides a new route to synthesize pentazolates, which are promising green energy materials with high energy density. Our work demonstrates a unique and universal hybridization propensity of covalently bonded molecules and solid compounds under pressure. This surprising miscibility suggests possible mixing regions between the molecular and rock layers in the interiors of large planets.

关键词： molecule-solid hybrid materials high-pressure crystal structure prediction density functional theory planet interior

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Investigating ischemia and reperfusion-induced organ damage in severe cardiac arrest:A comprehensive proteomics perspective

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journal of Pharmaceutical Analysis 2024年第3期14卷 427-430页

作者： ju Yeon Lee Muhammad Shoaib jin-Woong Choi Rishabh C.Choudhary Tai Yin Nara Yoon Kei Hayashida Seunguk j.Baek Santiago j.Miyara Lance B.Becker junhwan Kim Research Center of Bioconvergence Analysis Korea Basic Science InstituteCheongjuSouth Korea Bio-Analytical Science University of Science and TechnologyCheongjuSouth Korea Laboratory for Critical Care Physiology Feinstein Institutes for Medical ResearchManhassetNY11030USA Donald and barbara Zucker School of Medicine at Hofstra/Northwell School of Medicine HempsteadNY11549USA Mathematics and Computer Science Adelphi UniversityGarden CityNY11530USA Department of Emergency Medicine North Shore University HospitalManhassetNY11030USA

Cardiac arrest(CA)is a life-threatening condition with complex pathophysiology and limited treatment *** gain deeper insights into the pathological state of vital organs,we employed a proteomics analysis in rodents to assess proteome alterations in the brain,heart,kidney,and liver using a rat model of *** brain displayed severe protein alterations in essential cellular pathways,including three major energy-generating pathways after CA,which worsened after resuscitation,resulting in the most significant overall protein changes among the ***,the liver,experiencing the most substantial protein alterations post-CA,demonstrated significant recovery,presenting the least protein changes post-resuscitation.

关键词： alterations organs damage

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Fundamental Accounting Principles Kermit D. Larson, john j. Wild, barbara Chiappatta 16th instructor's ed.

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2002年

作者： Kermit D. Larson john j. Wild barbara Chiappatta

Includes four pages of transparencies.

ISBN: (数字)0072423390

ISBN: (纸本)0072423390

Includes four pages of transparencies.

关键词： Accounting.

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Modelling of grinding mechanics:A review

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Chinese journal of Aeronautics 2023年第7期36卷 25-39页

作者： Qingyu MENG Bing GUO Qingliang ZHAO Hao Nan LI Mark jjACKSON barbara SLINKE Xichun LUO Center for Precision Engineering School of Mechatronics EngineeringHarbin Institute of TechnologyHarbin 150001China School of Aerospace The University of Nottingham NingboNingbo 315100China School of Integrated Studies College of Technology and AviationKansas State UniversitySalinaKS 67401USA Department of Mechanical and Aerospace Engineering University of California DavisDavisUSA Centre for Precision Manufacturing DMEMUniversity of StrathclydeGlasgowUK

Grinding is one of the most widely used material removal methods at the end of many process *** force is related to almost all grinding parameters,which has a great influence on material removal rate,dimensional and shape accuracy,surface and subsurface integrity,thermodynamics,dynamics,wheel durability,and machining system *** that grinding force is related to almost all grinding parameters,grinding force can be used to detect grinding wheel wear,energy calculation,chatter suppression,force control and grinding process *** prediction of grinding forces is important for optimizing grinding parameters and the structure of grinding machines and *** there are substantial research papers on grinding mechanics,a comprehensive review on the modeling of grinding mechanics is still absent from the *** fill this gap,this work reviews and introduces theoretical methods and applications of mechanics in grinding from the aspects of modeling principles,limitations and possible future trendencies.

关键词： Force modeling Grinding Grinding mechanics Macro force Micro force Model application

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Processes and events in the center: a taxi trajectory-based approach to detecting traffic congestion and analyzing its causes

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International journal of Digital Earth 2023年第1期16卷 509-531页

作者： Yufeng He barbara Hofer Yehua Sheng Yue Yin Hui Lin Key Laboratory of Poyang Lake Wetland and Watershed Research Ministry of EducationJiangxi Normal UniversityNanchangPeople’s Republic of China School of Geography and Environment Jiangxi Normal UniversityNanchangPeople’s Republic of China Department of Geoinformatics–Z_GIS University of SalzburgSalzburgAustria School of Geography Nanjing Normal UniversityNanjingPeople’s Republic of China

A novel approach is introduced for the detection of the location and direction of traffic congestion using GPS data from *** approach uses a dynamic model that conceptualizes events,processes,and *** states are the locations of the taxis,the processes are the motion of taxis,and the events are *** model is implemented as a graph database,which represents the relationships between states,events,processes,and things(such as points of interest and road grid).Algorithms for constructing and updating the relationships and taxi behaviors dynamic retrieval method in Neo4j are presented and are used to demonstrate the capabilities in dynamic expression and *** implementation of Shanghai in 2015finally demonstrated the ability of congestion direction detection and the cause searching of traffic congestion.

关键词： VGE Spatio-temporal dynamics geographic processes traffic congestion trajectory

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Processes and events in the centre:a dynamic data model for representing spatial change

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International journal of Digital Earth 2022年第1期15卷 276-295页

作者： Yufeng He Yehua Sheng barbara Hofer Yi Huang jiarui Qin School of Geography Nanjing Normal UniversityNanjingPeople’s Republic of China Key Laboratory of Virtual Geographic Environment (Nanjing Normal University) Ministry of EducationNanjingPeople’s Republic of China jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application NanjingPeople’s Republic of China Department of Geoinformatics-Z_GIS University of SalzburgSalzburgAustria School of Geographic and Biologic Information Nanjing University of Posts and TelecommunicationsNanjingPeople’s Republic of China

Traditional geographic information system models for map representation use superposition of layers to model physical reality,neglecting the integrity of the environment and limiting the ability to express interactions between features in complex *** results in limitations regarding dynamic simulation and geographic causality *** this paper,we extend the framework of the geographic scene by formalizing the relationship between geographic processes and events to construct a dynamic data model:the process-event-centred dynamic data *** key element of this data model is relationships between processes,events,and states of the natural or man-made phenomenon of *** identified relationships can be translated into a network of hierarchical,developmental,and causal graphs and realized in the Neo4j graph *** implementation in the graph database supports spatio-temporal reasoning in geographic scenes and achieves an organizational framework for simulating spatio-temporal dynamics and complex *** example of a 2019 mega-typhoon process is used to demonstrate the introduced process-event-centred model and its implementation in the graph database.A series of queries to the graph database show the capabilities of the data model for spatial reasoning and dynamic modeling.

关键词： Spatio-temporal dynamics geographic scene geographic processes geographic events spatio-temporal reasoning graph database

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Mutation of a Gene in the Fungus Leptosphaeria maculans Allows Increased Frequency of Penetration of Stomatal Apertures of Arabidopsis thaliana

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Molecular Plant 2008年第3期1卷 471-481页

作者： Candace E. Elliott Harjono barbara j. Howletta School of Botany The University of Melbourne Melbourne Vic 3010 Australia . Current address: Laboratory of Forest Protection Faculty of Forestry Gadjah Mada University Yogyakarta Indonesia 55281

Leptosphaeria maculans, a pathogen of Brassica napus, is unable to invade most wild-type accessions of Arabidopsis thaliana, although several mutants are susceptible. The infection pathway of L. maculans via a non-invasive inoculation method on A. thaliana Imsl （undefined）, pmr4-1 （defective in callose deposition）, and pen1-1 and pen2-1 （defective in non-host responses to several pathogens） mutants is described. On wild types Col-0 and Ler-0, hyphae are generally arrested at stomatal apertures. A T-DNA insertional mutant of L. maculans （A22） that penetrates stomatal apertures of Col-0 and Ler-0 five to seven times more often than the wild-type isolate is described. The higher penetration frequency of isolate A22 is associated with an increased hypersensitive response, which includes callose deposition. Com- plementation analysis showed that the phenotype of this isolate is due to T-DNA insertion in an intronless gene denoted as ipa （increased penetration on A rabidopsis）. This gene is predicted to encode a protein of 702 amino acids with best matches to hypothetical proteins in other filamentous ascomycetes. The ipa gene is expressed in the wild-type isolate at low levels in culture and during infection of A. thaliana and B. napus.

关键词： NONHOST RESISTANCE BRASSICA-NAPUS SECONDARY STRUCTURE DISEASE RESISTANCE SALICYLIC-ACID OILSEED RAPE

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