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Identifying key genes associated with Hirschsprung's disease based on bioinformatics analysis of RNA-sequencing data

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World Journal of Pediatrics 2017年第3期13卷 267-273页

作者： Wei-Kang Pan Ya-Fei Zhang Hui Yu Ya Gao bai-jun zheng Peng Li Chong Xie Xin Ge Department of Pediatric Surgery The Second Affiliated Hospital of Xi'an Jiaotong UniversityXi'an 710004China Department of Endoscopy Shaanxi Nuclear Industry 215 HospitalXianyang 712000China

Background:Hirschsprung's disease (HSCR) is a type of megacolon induced by deficiency or dysfunction of ganglion cells in the distal intestine and is associated with developmental disorders of the enteric nervous *** explore the mechanisms of HSCR,we analyzed the RNA-sequencing data of the expansion and the narrow segments of colon tissues separated from children with ***:RNA-sequencing of the expansion segments and the narrow segments of colon tissues isolated from children with HSCR was *** differentially expressed genes (DEGs) were identified using the edgeR package in R,functional and pathway enrichment analyses of DEGs were carried out using DAVID *** further screen the key genes,protein-protein interaction (PPI) network and module analyses were conducted separately using Cytoscape ***:A total of 117 DEGs were identified in the expansion segment samples,including 47 up-regulated and 70 down-regulated *** enrichment analysis suggested that FOS and DUSP1 were implicated in response to endogenous *** the PPI network analysis,FOS (degree=20),EGR1 (degree=16),ATF3 (degree=9),NOS1 (degree=8),CCL5 (degree=8),DUSP1 (degree=7),CXCL3 (degree=6),VIP (degree=6),FOSB (degree=5),and NOS2 (degree=4) had higher degrees,which could interact with other *** addition,two significant modules (module 1 and module 2) were identified from the PPI ***:Several genes (including FOS,EGR1,ATF3,NOS1,CCL5,DUSP1,CXCL3,VIP,FOSB,and NOS2) might be involved in the development of HSCR through their effect on the nervous system.

关键词： differentially expressed genes functional and pathway enrichment analysis Hirschsprung's disease protein-protein interaction network

Evolution of pore systems in low-maturity oil shales during thermal upgrading--Quantified by dynamic SEM and machine learning

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Petroleum Science 2024年第3期21卷 1739-1750页

作者： jun Liu Xue bai Derek Elsworth Key Laboratory of Deep Underground Science and Engineering(Ministry of Education) Institute of New Energy and Low-Carbon TechnologySichuan UniversityChengdu610065SichuanChina International Quantum Academy Shenzhen518048GuangdongChina Shenzhen Institute of Advanced Electronic Materials Shenzhen Institute of Advanced TechnologyChinese Academy of SciencesShenzhen518055GuangdongChina Department of Energy and Mineral Engineering Pennsylvania State University ParkPA 16802USA

In-situ upgrading by heating is feasible for low-maturity shale oil,where the pore space dynamically *** characterize this response for a heated substrate concurrently imaged by *** systematically follow the evolution of pore quantity,size(length,width and cross-sectional area),orientation,shape(aspect ratio,roundness and solidity)and their anisotropy—interpreted by machine *** indicate that heating generates new pores in both organic matter and inorganic ***,the newly formed pores are smaller than the original pores and thus reduce average lengths and widths of the bedding-parallel pore ***,the average pore lengths and widths are increased in the bedding-perpendicular ***,heating increases the cross-sectional area of pores in low-maturity oil shales,where this growth tendency fluctuates at300℃.In addition,the orientation and shape of the newly-formed heating-induced pores follow the habit of the original pores and follow the initial probability distributions of pore orientation and ***,limited anisotropy is detected in pore direction and shape,indicating similar modes of evolution both bedding-parallel and *** propose a straightforward but robust model to describe evolution of pore system in low-maturity oil shales during heating.

关键词： Low-maturity oil shale Pore elongation Organic matter pyrolysis In-situthermal upgrading Scanning electron microscopy(SEM) Machine learning

Plasticity dependence on amorphous continuity in Fe-SiOC dual-phase nanocomposites

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Journal of Materials Science & Technology 2024年第6期173卷 80-85页

作者： Weiming Li Lichen bai Kaisheng Ming Shijian zheng Tianjin Key Laboratory of Materials Laminating Fabrication and Interface Control Technology School of Materials Science and EngineeringHebei University of TechnologyTianjin 300130China

*** High strength and large deformability are greatly desirable for advanced structural metallic *** strengthening methods in crystalline materials rely on controlling the generation,propagation,and intersection of di... 详细信息

关键词： strengthening amorphous phase

Low-protein diet supplemented with 1% L-glutamine improves growth performance, serum biochemistry, redox status, plasma amino acids, and alters fecal microbiota in weaned piglets

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Animal Nutrition 2024年第2期17卷 144-154页

作者： jun Li jun bai Ying Yang Zhenlong Wu State Key Laboratory of Animal Nutrition and Feeding Department of Companion Animal Science China Agricultural University

Glutamine, one of the most abundant amino acids in the body, has been shown to exert various beneficial effects in pigs. However, knowledge regarding the role of dietary glutamine in low-protein diet-fed piglets remains scarce. The present study aimed to investigate the effects of different levels of L-glutamine on growth performance, serum biochemistry parameters, redox status, amino acids, and fecal microbiota in low-protein diet-fed piglets. A total of 128 healthy crossbred piglets(Landrace × Yorkshire)were randomly allocated into 4 groups of 4 replicate pens, with 8 piglets per pen. Piglets in the 4 groups were fed with corn and soybean meal-based low-protein diets(crude protein level, 17%) that contained0%, 1%, 2%, and 3% L-glutamine, respectively, for 28 d. Pigs administered 1% L-glutamine had greater body weight on d 28 and average daily gain(ADG, P < 0.01), whereas a lower feed to gain ratio(F:G) from d 1to 28(P < 0.01), compared to the other three groups. Besides, lower body weight on d 14 and 28, ADG,average daily feed intake, and higher F:G from d 15 to 28 and d 1 to 28 were observed in response to 2%and 3% L-glutamine treatments than 0% and 1% L-glutamine treatments(P < 0.01). Moreover, 1% Lglutamine reduced serum glucose, malondialdehyde, hydrogen peroxide concentrations and inhibited aspartate aminotransferase, alanine aminotransferase, myeloperoxidase activities in low-protein diet-fed piglets on d 14, with concomitantly upregulated catalase, total superoxide dismutase activities and glutathione level(P < 0.05). However, dietary 3% L-glutamine enhanced blood urea nitrogen content in pigs on d 14(P < 0.05). Further investigation revealed that 1% L-glutamine upregulated the serum glutamine, lysine, methionine, tyrosine, and reduced plasma valine content(P < 0.05). Additionally, 1% Lglutamine upregulated the abundance of p＿75＿a5, Clostridium, Lactobacillus, Prevotellaceae＿Prevotella,and Gemmiger in the stool of piglets on d 14, with the Streptococcus lev

关键词： Glutamine Low protein diet Pig Redox status Amino acid Microbiota

Phenotypic and functional comparison of rat enteric neural crest-derived cells during fetal and earlypostnatal stages

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Neural Regeneration Research 2021年第11期16卷 2310-2315页

作者： Dong-Hao Tian Chuan-Hui Qin Wen-Yao Xu Wei-Kang Pan Yu-Ying Zhao bai-jun zheng Xin-Lin Chen Yong Liu Ya Gao Hui Yu Department of Pediatric Surgery the Second Affiliated HospitalXi’an Jiaotong UniversityXi’anShaanxi ProvinceChina Department of Anorectal Suizhou Central HospitalHubei University of MedicineSuizhouHubei ProvinceChina Institute of Neurobiology Environment and Genes Related to Diseases Key Laboratory of Chinese Ministry of EducationXi’an Jiaotong UniversityXi’anShaanxi ProvinceChina

In our previous study,we showed that with increasing time in culture,the growth characteristics of enteric neural crest-derived cells(ENCCs)change,and that the proliferation,migration and neural differentiation potential of these cells in vitro notably ***,there are no studies on the developmental differences in these characteristics between fetal and early-postnatal stages in vitro or in *** this study,we isolated fetal(embryonic day 14.5)and postnatal(postnatal day 2)ENCCs from the intestines of *** ENCCs had greater maximum cross-sectional area of the neurospheres,stronger migration ability,and reduced apoptosis,compared with postnatal ***,fetal and postnatal ENCCs had a similar differentiation *** and postnatal ENCCs both survived after transplant into a rat model of Hirschsprung’s *** these rats with Hirschsprung’s disease,the number of ganglionic cells in the myenteric plexus was higher and the distal intestinal pressure change was greater in animals treated with fetal ENCCs compared with those treated with postnatal *** findings suggest that,compared with postnatal ENCCs,fetal ENCCs exhibit higher survival and proliferation and migration abilities,and are therefore a more appropriate seed cell for the treatment of Hirschsprung’s *** study was approved by the Animal Ethics Committee of the Second Affiliated Hospital of Xi’an Jiaotong University(approval No.2016086)on March 3,2016.

关键词： cell transplantation enteric nervous system enteric neural crest-derived cells Hirschsprung’s disease stem cells

Image Inpainting Technique Incorporating Edge Prior and Attention Mechanism

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Computers, Materials & Continua 2024年第1期78卷 999-1025页

作者： Jinxian bai Yao Fan Zhiwei Zhao Lizhi zheng College of Information Engineering Xizang Minzu UniversityXianyang712000China

Recently,deep learning-based image inpainting methods have made great strides in reconstructing damaged ***,these methods often struggle to produce satisfactory results when dealing with missing images with large holes,leading to distortions in the structure and blurring of *** address these problems,we combine the advantages of transformers and convolutions to propose an image inpainting method that incorporates edge priors and attention *** proposed method aims to improve the results of inpainting large holes in images by enhancing the accuracy of structure restoration and the ability to recover texture *** method divides the inpainting task into two phases:edge prediction and image ***,in the edge prediction phase,a transformer architecture is designed to combine axial attention with standard *** design enhances the extraction capability of global structural features and location *** also balances the complexity of self-attention operations,resulting in accurate prediction of the edge structure in the defective *** the image inpainting phase,a multi-scale fusion attention module is *** module makes full use of multi-level distant features and enhances local pixel continuity,thereby significantly improving the quality of image *** evaluate the performance of our *** experiments are conducted on several datasets,including CelebA,Places2,and *** experiments show that our method outperforms the other mainstream ***,it improves Peak Signal-to-Noise Ratio(PSNR)and Structure Similarity Index Measure(SSIM)by 1.141~3.234 db and 0.083~0.235,***,it reduces Learning Perceptual Image Patch Similarity(LPIPS)and Mean Absolute Error(MAE)by 0.0347~0.1753 and 0.0104~0.0402,*** experiments reveal that our method excels at reconstructing images with complete structural information and c

关键词： Image inpainting transformer edge prior axial attention multi-scale fusion attention

Recent Advances in Asymmetric Structural Composites for Excellent Electromagnetic Interference Shielding: A Review

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Chinese Journal of Polymer Science 2024年第6期42卷 693-710页

作者： Ying Zhou bai Xue Lan Xie Chang-Mei Wu Qiang zheng Department of Polymer Materials and Engineering College of Materials and Metallurgy Guizhou University National Engineering Research Center for Compounding and Modification of Polymer Materials National and Local Joint Engineering Research Center for Functional Polymer Membrane Materials and Membrane Processes State Key Laboratory of Public Big Data Guizhou University Department of Polymer Science and Engineering Zhejiang University

Since electromagnetic pollution is detrimental to human health and the environment, numerous efforts have been successively made to achieve excellent electromagnetic interference shielding effectiveness(EMI SE) via designing the hierarchical structures for electromagnetic interference(EMI) shielding polymer composites. Among the plentiful structures, the asymmetric structures are currently a hot spot, principally categorizing into multi-layered, porous, fibrous, and segregated asymmetric structures, which endows the high EMI shielding performance for polymer composites incorporated with magnetic, conductive, and/or dielectric micro/nano-fillers, due to the “absorption-reflection-reabsorption” shielding mechanism. Therefore, this review provides the retrospection and summary of the efforts with respect to abundant asymmetric structures and multifunctional micro/nano-fillers for enhancing EMI shielding properties, which is conducive to the booming development of polymeric EMI shielding materials for the promising prospect in modern electronics and 5-generation(5G) technology.

关键词： Asymmetric structure Microano functional filler Polymer composite Electromagnetic interference shielding

Stereochemical editing:Catalytic racemization of secondary alcohols and amines

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Chinese Chemical Letters 2024年第5期35卷 17-31页

作者： jun Zhang Zhiyao zheng Can Zhu Department of Chemistry Fudan UniversityShanghai 200438China Department of Organic Chemistry Arrhenius LaboratoryStockholm UniversityStockholm 10691Sweden

Chiral alcohols and amines are important structural units widely existing in pharmaceuticals,agrochemicals,and food *** kinetic resolution(DKR)is an efficient strategy to deliver optically active alcohols and amines from their *** the development of DKR method,racemization catalyst plays as a crucial element with the requirement of compatibility with the kinetic resolution(KR)*** this paper,recent advance in the catalytic racemization of secondary alcohols and amines is summarized based on different types of racemizing intermediates,which are redox racemization via ketone/imine intermediates,racemization via radical intermediates,and racemization via carbocation *** racemization of secondary alcohols and amines is also enclosed.

关键词： Racemization Secondary alcohols Amines Kinetic resolution Dynamic kinetic resolution

Multi-electron reaction and fast Al ion diffusion of δ-MnO_(2) cathode materials in rechargeable aluminum batteries via first-principle calculations

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Chinese Chemical Letters 2024年第4期35卷 248-254页

作者： Lumin zheng Ying bai Chuan Wu School of Materials Science&Engineering Beijing Institute of TechnologyBeijing 100081China Yangtze Delta Region Academy of Beijing Institute of Technology Jiaxing 314019China

Rechargeable aluminum batteries with multi-electron reaction have a high theoretical capacity for next generation of energy storage devices. However, the diffusion mechanism and intrinsic property of Al insertion into MnO_(2) are not clear. Hence, based on the first-principles calculations, key influencing factors of slow Al-ions diffusion are narrow pathways, unstable Al-O bonds and Mn^(3+) type polaron have been identified by investigating four types of δ-MnO_(2)(O3, O'3, P2 and T1). Although Al insert into δ-MnO_(2) leads to a decrease in the spacing of the Mn-Mn layer, P2 type MnO_(2) keeps the long(spacious pathways)and stable(2.007–2.030 A) Al-O bonds resulting in the lower energy barrier of Al diffusion of 0.56 e V. By eliminated the influence of Mn^(3+)(low concentration of Al insertion), the energy barrier of Al migration achieves 0.19 e V in P2 type, confirming the obviously effect of Mn^(3+) polaron. On the contrary, although the T1 type MnO_(2) has the sluggish of Al-ions diffusion, the larger interlayer spacing of Mn-Mn layer,causing by H_(2)O could assist Al-ions diffusion. Furthermore, it is worth to notice that the multilayer δ-MnO_(2) achieves multi-electron reaction of 3|e|. Considering the requirement of high energy density, the average voltage of P2(1.76 V) is not an obstacle for application as cathode in RABs. These discover suggest that layered MnO_(2) should keep more P2-type structure in the synthesis of materials and increase the interlayer spacing of Mn-Mn layer for providing technical support of RABs in large-scale energy storage.

关键词： Rechargeable aluminum batteries δ-MnO_(2) First-principles calculations Multi-electron reaction Diffusion mechanism