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Machine learning enabled autonomous microstructural characterization in 3D samples

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npj Computational Materials 2020年第1期6卷 1654-1662页

作者： Henry Chan Mathew Cherukara Troy D.Loeffler badri narayanan Subramanian K.R.S.Sankaranarayanan Center for Nanoscale Materials Argonne National LaboratoryArgonneILUSA Department of Mechanical Engineering University of LouisvilleLouisvilleKYUSA Department of Mechanical and Industrial Engineering University of Illinois at ChicagoChicagoILUSA

We introduce an unsupervised machine learning(ML)based technique for the identification and characterization of microstructures in three-dimensional(3D)samples obtained from molecular dynamics simulations,particle tracking data,or *** technique combines topology classification,image processing,and clustering algorithms,and can handle a wide range of microstructure types including grains in polycrystalline materials,voids in porous systems,and structures from self/directed assembly in soft-matter complex *** technique does not require a priori microstructure description of the target system and is insensitive to disorder such as extended defects in polycrystals arising from line and plane *** demonstrate quantitively that our technique provides unbiased microstructural information such as precise quantification of grains and their size distributions in 3D polycrystalline samples,characterizes features such as voids and porosity in 3D polymeric samples and micellar size distribution in 3D complex *** demonstrate the efficacy of our ML approach,we benchmark it against a diverse set of synthetic data samples representing nanocrystalline metals,polymers and complex fluids as well as experimentally published characterization *** technique is computationally efficient and provides a way to quickly identify,track,and quantify complex microstructural features that impact the observed material behavior.

关键词： microstructure polycrystalline porosity

Assessment of antimicrobial activity of c-type lysozyme from Indian shrimp Fenneropenaeus indicus

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Journal of Coastal Life Medicine 2014年第10期 757-761页

作者： Viswanathan Karthik Thomas Ancy Dharmaraj Ramkumar Narayanasamy Mathivanan Rangarajan badri narayanan Centre for Biotechnology Anna UniversityChennai 600025Tamil NaduIndia Biocontrol and Microbial Metabolites Lab Centre for Advanced Studies in BotanyUniversity of MadrasChennai-600025Tamil NaduIndia

Objective:To assess the multitudinal antimicrobial effects of recombinant lysozyme fromFenneropenaeus indicus(rFi-Lyz)in comparison with commercially available recombinant hen egg white lysozyme(rHEWL).Methods:Antimicrobial activity of the recombinant rFi-Lyz using several Gram positive,Gram negative bacteria and fungi in comparison with rHEWL has been ***-Lyz was expressed and purified using Ni2+affinity *** effect of rFi-Lyz in the growth of yeast Candida krusei,plant molds Rhizoctonia solani and Fusarium solani was assessed by well diffusion assay in petri plates with potato dextrose ***:rFi-Lyz exhibited high inhibitory activity on Gram positive bacteria such as Staphylococcus aureus and Bacillus *** various Gram negative bacteria testedKlebsiella pneumoniae exhibited the highest inhibition followed by Pseudomonas aeruginosa and Shigella ***-Lyz also exhibited significant inhibition on two marine pathogens Aeromonas veronii and Vibrio *** the various fungal strains tested,rFi-Lyz inhibited the growth of budding yeast Candida krusei *** the growth of two other plants fungus Rhizoctonia solani and Fusarium oxysporum were retarded by rFi-Lyz in the plate inhibition ***:rFi-Lyz exhibits a broad spectrum of antimicrobial activity like a natural antibiotic on various pathogenic bacteria and fungal strains.

关键词： Lysozyme Fenneropenaeus indicus Antimicrobial activity

Economic and Land Use Impacts of Improving Water Use Efficiency in Irrigation in South Asia

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Journal of Environmental Protection 2016年第11期7卷 1571-1591页

作者： Farzad Taheripour Thomas W. Hertel badri narayanan Sebnem Sahin Anil Markandya Bijon Kumer Mitra Department of Agricultural Economics Purdue University West Lafayette USA School of Environment University of Washington Seattle USA The World Bank Washington DC USA Basque Centre for Climate Change Spain and Bath University Bath UK Institute for Global Environmental Strategies Hayama Japan

This paper modifies and uses an advanced computable general equilibrium model coupled with biophysical data on land and water resources by Agro-Ecological Zone (AEZ) at the river basin level to examine the economy-wide consequences of im-provements in water use efficiency (WUE) in irrigation in South Asia. This is the first time the benefits of such improvements have been evaluated in an economy-wide context. It shows that such improvements increase production of food items, enhance food exports, and significantly improve food security in South Asia. Improvement in water use efficiency also leads to lower food prices, provides the opportunity to extend irrigated areas, decreases demand for cropland, and enhances reforestation. Im-provement in water use efficiency in irrigation also generates important net GDP gains across the South Asia region. Investments in improved WUE of up to 40% can be economically justified in Bangladesh, India, and Sri Lanka. However, in Nepal, for an improvement of more than 20% in WUE, the economic gains are smaller than costs from the associated investments. In Pakistan and rest of South Asia, an improvement in WUE of up to 30% appears to be economically profitable.

关键词： General Equilibrium Water Use Efficiency Economy Wide Impacts Irrigation Land Use Change South Asia

Utilizing auxin dwarf genes to optimize seed yield and lodging resistance in rapeseed

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The Crop Journal 2024年第4期12卷 1208-1221页

作者： Hongxiang Lou Yan Peng Chunyun Wang Zongkai Wang Bowen Zhao Ali Mahmoud El-badri Maria Batool Bo Wang Jing Wang Zhenghua Xu Jie Zhao Jie Kuai Guangsheng Zhou MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River Hubei Hongshan LaboratoryCollege of Plant Science and TechnologyHuazhong Agricultural UniversityWuhan 430070HubeiChina National Key Laboratory of Crop Genetic Improvement Huazhong Agricultural UniversityWuhan 430070HubeiChina Field Crops Research Institute Agricultural Research CenterGiza 12619Giza GovernorateEgypt

Direct-seeding rapeseed production at high plant density raises the risk of *** investigated the use of dwarf genes to improve rapeseed plant architecture to balance yield and *** genotypes with different plant architectures(dwarf sca^(HS5),semi-dwarf+/sca^(HS5),and tall ^(HS5))were evaluated under varying nitrogen rates(N1,N2,and N3:120,240,and 360 kg N ha^(-1))and plant densities(D1,D2,and D3:15,45,and 75 plants m^(-2))from 2019 to *** results showed that increasing N rate positively influenced yield while decreasing lodging resistance in all *** plant density(D2-D3)enhanced lodging resistance and yield in sca^(HS5) and+/sca^(HS5),but reduced yield in ^(HS5).Compared to the two parents,+/sca^(HS5) exhibited moderate expressions of IAA3,GH3.15,and SAUR30 in stems under N2D3,resulting in reduced plant height and increased ***,+/sca^(HS5) had a thicker silique layer than ^(HS5) by 14.7%,and it had a significant correlation between branch height/angle and *** N rate led to increased lignin and pectin contents,while cellulose content *** plant density resulted in greater stem cellulose content and CSLA3/7 expression in sca^(HS5) and+/sca^(HS5),but decreased in ^(HS5).Compared to ^(HS5),+/sca^(HS5) exhibited higher expressions of ARAD1 and GAUT4,along with a 51.1%increase in pectin content,leading to improved lodging resistance under ***,+/sca^(HS5) showed a 46.4%higher yield and 38.9%lodging resistance than ^(HS5) under N2D3,while sca^(HS5) demonstrated strong lodging resistance but lower yield ***,this study underscores the potential of utilizing auxin dwarf genes to optimize the trade-off between yield and lodging resistance in rapeseed and the possibility of maximizing yield potential by optimizing the plant architecture of+/sca^(HS5) through nitrogen reduction and dense planting.

关键词： Rapeseed Plant density Nitrogen Lodging Auxin

Evaluation of hybrid closed-loop insulin delivery system in type 1 diabetes in real-world clinical practice:One-year observational study

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World Journal of Diabetes 2024年第3期15卷 455-462页

作者： Ahmed Eldib Shilton Dhaver Karim Kibaa Astrid Atakov-Castillo Tareq Salah Marwa Al-badri Abdelrahman Khater Ryan McCarragher Omnia Elenani Elena Toschi Osama Hamdy Department of Clinical Behavioral&Outcomes ResearchJoslin Diabetes CenterBostonMA 02215United States Department of Medicine Harvard Medical SchoolBostonMA 02115United States

BACKGROUND In 2016,the Food and Drug Administration approved the first hybrid closed-loop(HCL)insulin delivery system for adults with type 1 diabetes(T1D).There is limited information on the impact of using HCL systems on patient-reported outcomes(PROs)in patients with T1D in real-world clinical *** this independent study,we evaluated glycemic parameters and PROs over one year of continuous use of Medtronic’s 670G HCL in real-world clinical *** To assess the effects of hybrid closed loop system on glycemic control and quality of life in adults with *** We evaluated 71 patients with T1D(mean age:45.5±12.1 years;59%females;body weight:83.8±18.7 kg,body mass index:28.7±5.6 kg/m2,A1C:7.6%±0.8%)who were treated with HCL at Joslin Clinic from 2017 to *** measured A1C and percent of glucose time-in-range(%TIR)at baseline and 12 *** measured percent time in auto mode(%TiAM)for the last two weeks preceding the final visit and assessed PROs through several validated quality-of-life surveys related to general health and diabetes *** At 12 mo,A1C decreased by 0.3%±0.1%(P=0.001)and%TIR increased by 8.1%±2.5%(P=0.002).The average%TiAM was only 64.3%±32.8%and was not associated with A1C,%TIR or ***,provided at baseline and at the end of the study,showed that the physical functioning submodule of 36Item Short-Form Health Survey increased significantly by 22.9%(P<0.001).Hypoglycemia fear survey/worry scale decreased significantly by 24.9%(P<0.000);Problem Areas In Diabetes reduced significantly by-17.2%(P=0.002).The emotional burden submodules of dietary diversity score reduced significantly by-44.7%(P=0.001).Furthermore,analysis of Clarke questionnaire showed no increase in awareness of hypoglycemic ***-5 showed no improvements in subject’s wellbeing among participants after starting the 670G HCL ***,analysis of Pittsburgh Sleep Quality Index showed no difference in sleep quality,sleep latency,or duration o

关键词： Artificial pancreas Continuous blood glucose monitor Type 1 diabetes Hybrid closed-loop insulin delivery Quality of life

On Time-Constant Robust Tuning of Fractional Order [Proportional Derivative] Controllers

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IEEE/CAA Journal of Automatica Sinica 2019年第5期6卷 1179-1186页

作者： Vahid badri Mohammad Saleh Tavazoei Electrical Engineering Department Sharif University of TechnologyTehranIran

This paper deals with analyzing a newly introduced method for tuning of fractional order [proportional derivative](FO[PD]) controllers to be used in motion control. By using this tuning method, not only the phase margin and gain crossover frequency are adjustable, but also robustness to variations in the plant time-constant is guaranteed. Conditions on the values of control specifications(desired phase margin and gain crossover frequency) for solution existence in this tuning method are found. Also, the number of solutions is analytically determined in this study. Moreover, experimental verifications are presented to indicate the applicability of the obtained results.

关键词： Fractional order controller robustness solution existence tuning method

A mild,efficient and selective iodination of aromatic compounds using iodine and 1,4-bis(triphenylphosphonium)-2-butene peroxodisulfate

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Chinese Chemical Letters 2009年第12期20卷 1439-1443页

作者： Rashid badri Maryam Gorjizadeh Chemistry Department College of ScienceShahid Chamran University Chemistry Department College of ScienceShahid Chamran UniversityAhvaz 61357-4-3169 Iran

A simple and efficient method for the iodination of aromatic compounds has been achieved in the presence of iodine and 1,4- bis（triphenylphosphonium）-2-butene peroxodisulfate.

关键词： Iodoaromafic compounds Aromatic compounds Iodine 1,4-Bis(triphenylphosphonium)-2-butene peroxodisulfate

Wave Energy Estimation by Using A Statistical Analysis and Wave Buoy Data near the Southern Caspian Sea

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China Ocean Engineering 2015年第2期29卷 275-286页

作者： A.R.Zamani M.A.badri Research Institute for Subsea Science and Technology Isfahan University of Technology

Statistical analysis was done on simultaneous wave and wind using data recorded by discus-shape wave buoy. The area is located in the southern Caspian Sea near the Anzali Port. Recorded wave data were obtained through directional spectrum wave analysis. Recorded wind direction and wind speed were obtained through the related time series as well. For 12-month measurements（May 25 2007-2008）, statistical calculations were done to specify the value of nonlinear auto-correlation of wave and wind using the probability distribution function of wave characteristics and statistical analysis in various time periods. The paper also presents and analyzes the amount of wave energy for the area mentioned on the basis of available database. Analyses showed a suitable comparison between the amounts of wave energy in different seasons. As a result, the best period for the largest amount of wave energy was known. Results showed that in the research period, the mean wave and wind auto correlation were about three hours. Among the probability distribution functions, i.e Weibull, Normal, Lognormal and Rayleigh, ＂Weibull＂ had the best consistency with experimental distribution function shown in different diagrams for each season. Results also showed that the mean wave energy in the research period was about 49.88 k W/m and the maximum density of wave energy was found in February and March, 2010.

关键词： probability distribution function nonlinear auto-correlation wave energy statistical analysis Anzali Port

Microstructure and Impression Creep Properties of Ca-Containing AS31 Magnesium Alloy

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Acta Metallurgica Sinica(English Letters) 2016年第12期29卷 1089-1097页

作者： Mohammad badri Seyyed Mehdi Miresmaeili Bahram Nami Shahid Rajaee Teacher Training University Lavizan TehranIran

The effect of Ca addition on the microstructure and impression creep properties of AS31 magnesium alloy was investigated in the current study. The results showed that the microstructure of AS31 alloy is composed of α（Mg） phase, massive Mg17Al12 and some Chinese script Mg2Si compounds. Addition of 2 wt% Ca to AS31 alloy resulted in complete elimination of MglTAl12 phase and formation of Al2Ca compound. Ca improved the alloy＇s creep properties especially at higher temperature. Improvement in the creep properties was attributed to the elimination of soft Mg17Al12 and formation of thermally stable Al2Ca compound. According to the obtained stress exponent and creep activation energy, pipe diffusion climb-controlled creep was estimated as the dominant creep mechanism and Ca had no influence on the dominant mechanism.

关键词： Magnesium-aluminum-silicon alloy Calcium Microstructure Creep Mechanism