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Long-COVID-19: the persisting imprint of SARS-CoV-2 infections on the innate immune system

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Signal Transduction and Targeted Therapy 2024年第1期9卷 12-13页

作者： Marianne Boes Pascal falter-Braun Center for Translational Immunology and Department of Pediatric Immunology University Medical Center UtrechtUtrecht UniversityUtrechtThe Netherlands Institute of Network Biology(INET) Molecular Targets and Therapeutics Center(MTTC)Helmholtz MunichNeuherbergGermany Microbe-Host Interactions Faculty of BiologyLudwig-Maximilians-Universität MünchenPlanegg-MartinsriedGermany

In a recent Cell publication,Cheong et *** how COVID-19 causes IL-6 induced epigenetic reprogramming of human immune stem cells,which causes lasting alterations in the composition and response characteristics of circulating immune cells.1 The study provides important insights into the mechanisms by which SARSCoV-2 infections impact the human immune system and is an important hook into unraveling the mechanisms of post-acute sequelae of COVID-19(PASC)commonly referred to as longCOVID.

关键词： system COV programming

Optic nerve injury-induced regeneration in the adult zebrafish is accompanied by spatiotemporal changes in mitochondrial dynamics

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Neural Regeneration Research 2023年第1期18卷 219-225页

作者： An Beckers Luca Masin annelies Van Dyck Steven Bergmans Sophie Vanhunsel Anyi Zhang Tine Verreet Fabienne EPoulain Karl Farrow Lieve Moons Neural Circuit Development and Regeneration Research Group Animal Physiology and Neurobiology SectionDepartment of BiologyKatholieke Universiteit LeuvenLeuvenBelgium Poulain Lab Department of Biological SciencesUniversity of South CarolinaColumbiaSCUSA Neuro-Electronics Research Flanders Vlaams Instituut voor Biotechnologie(VIB)LeuvenBelgium Leuven Brain Institute LeuvenBelgium Imec LeuvenBelgium

Axonal regeneration in the central nervous system is an energy-intensive *** contrast to mammals,adult zebrafish can functionally recover from neuronal *** raises the question of how zebrafish can cope with this high energy *** previously showed that in adult zebrafish,subjected to an optic nerve crush,an antagonistic axon-dendrite interplay exists wherein the retraction of retinal ganglion cell dendrites is a prerequisite for effective axonal *** postulate a‘dendrites for regeneration’paradigm that might be linked to intraneuronal mitochondrial reshuffling,as ganglion cells likely have insufficient resources to maintain dendrites and restore axons ***,we characterized both mitochondrial distribution and mitochondrial dynamics within the different ganglion cell compartments(dendrites,somas,and axons)during the regenerative *** nerve crush resulted in a reduction of mitochondria in the dendrites during dendritic retraction,whereafter enlarged mitochondria appeared in the optic nerve/tract during axonal *** dendritic regrowth in the retina,mitochondrial density inside the retinal dendrites returned to baseline ***,a transient increase in mitochondrial fission and biogenesis was observed in retinal ganglion cell somas after optic nerve *** together,these findings suggest that during optic nerve injury-induced regeneration,mitochondria shift from the dendrites to the axons and back again and that temporary changes in mitochondrial dynamics support axonal and dendritic regrowth after optic nerve crush.

关键词： axonal regeneration central nervous system dendrite remodeling energy metabolism fission mitochondria mitochondrial trafficking optic nerve crush retina zebrafish

New guidelines for fluorophore application in peroxisome targeting analyses in transient plant expression systems

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Journal of Integrative Plant Biology 2019年第7期61卷 884-899页

作者： Christian falter Nguyen Binh Anh Thu Saugat Pokhrel Sigrun Reumann Plant Biochemistry and Infection Biology Institute of Plant Science and Microbiology University of Hamburg

Peroxisome research has been revolutionized by proteome studies combined with in vivo subcellular targeting analyses. Yellow and cyan fluorescent protein(YFP and CFP) are the classical fluorophores of plant peroxisome research. In the new transient expression system of Arabidopsis seedlings co-cultivated with Agrobacterium we detected the YFP fusion of one candidate protein in peroxisomes, but only upon co-transformation with the peroxisome marker, CFP-PTS1. The data suggested that the YFP fusion was directed to peroxisomes due to its weak heterodimerization ability with CFP-PTS1,allowing piggy-back import into peroxisomes. Indeed, if co-expressed with monomeric Cerulean-PTS1(mCer-PTS1),the YFP fusion was no longer matrix localized. We systematically investigated the occurrence and extent of dimerization-based piggy-back import for different fluorophore combinations in five major transient plant expression systems. In Arabidopsis seedlings and tobacco leaves both untagged YFP and monomeric Venus were imported into peroxisomes if co-expressed with CFP-PTS1 but not with mCer-PTS1. By contrast, piggy-back import of cytosolic proteins was not observed in Arabidopsis and tobacco protoplasts or in onion epidermal cells for any fluorophore combination at any time point. Based on these important results we formulate new guidelines for fluorophore usage and experimental design to guarantee reliable identification of novel plant peroxisomal proteins.

关键词： transient plant expression systems fluorophore

Systems Biology of Plant-Microbiome Interactions

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Molecular Plant 2019年第6期12卷 804-821页

作者： Patricia A.Rodriguez Michael Rothballer Soumitra Paul Chowdhury Thomas Nussbaumer Caroline Gutjahr Pascal falter-Braun Institute of Network Biology (INET) Helmholtz Zentrum Munchen German Research Center for Environmental Health Munich Germany Institute of Environmental Medicine (IEM) UNIKA-T Technical University of Munich Augsburg Germany Plant Genetics TUM School of Life Science Weihenstephan Technical University of Munich (TUM) Freising Germany Microbe-Host Interactions Faculty of Biology Ludwig-Maximilians-Universitat (LMU) Mijnchen Munich Germany

In natural environments,plants are exposed to diverse microbiota that they interact with in complex *** plant-pathogen interactions have been intensely studied to understand defense mechanisms in plants,many microbes and microbial communities can have substantial beneficial effects on their plant *** beneficial effects include improved acquisition of nutrients,accelerated growth,resilience against pathogens,and improved resistance against abiotic stress conditions such as heat,drought,and ***,the beneficial effects of bacterial strains or consortia on their host are often cultivar and species specific,posing an obstacle to their general ***,many of the signals that trigger plant immune responses are molecularly highly similar and often identical in pathogenic and beneficial ***,it is unclear what determines the outcome of a particular microbe-host interaction and which factors enable plants to distinguish beneficials from *** unravel the complex network of genetic,microbial,and metabolic interactions,including the signaling events mediating microbe-host interactions,comprehensive quantitative systems biology approaches will be needed.

关键词： plant systems biology plant microbiome microbial communities SynComs microbe-host interactions

The Group A Streptococcus Interleukin-8 Protease SpyCEP Promotes Bacterial Intracellular Survival by Evasion of Autophagy

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Infectious Microbes & Diseases 2022年第3期4卷 116-123页

作者： RenéBergmann Giuseppe Gulotta Federica Andreoni Tomoko Sumitomo Shigetada Kawabata annelies S.Zinkernagel Gursharan S.Chhatwal Victor Nizet Manfred Rohde Satoshi Uchiyama Central Unit for Microscopy(ZEIM) Helmholtz Centre for Infection ResearchBraunschweigGermany Division of Infectious Diseases and Hospital Epidemiology University Hospital ZurichZurichSwitzerland Department of Oral and Molecular Microbiology Osaka University Graduate School of DentistrySuita-OsakaJapan Division of Host-Microbe Systems and Therapeutics Department of PediatricsUniversity of CaliforniaSan DiegoLa JollaCalifornia

Autophagy serves an innate immune function in defending the host against invading bacteria,including group A Streptococcus(GAS).Autophagy is regulated by numerous host proteins,including the endogenous negative regulator calpain,a cytosolic *** disseminated serotypeM1T1 GAS strains associated with high invasive disease potential express numerous virulence factors and resist autophagic *** in vitro infection of human epithelial cell lines with representative wild-type GAS M1T1 strain 5448(M1.5448),we observed increased calpain activation linked to a specific GAS virulence factor,the interleukin-8 protease *** activation inhibited autophagy and decreased capture of cytosolic GAS in *** contrast,the serotype M6 GAS strain JRS4(***4),which is highly susceptible to host autophagy-mediated killing,expresses low levels of SpyCEP and does not activate *** of SpyCEP in ***4 stimulated calpain activation,inhibited autophagy,and significantly decreased bacterial capture in *** paired loss-and gain-of-function studies reveal a novel role for the bacterial protease SpyCEP in enabling GAS M1 evasion of autophagy and host innate immune clearance.

关键词： group A Streptococcus SpyCEP virulence factor epithelial cells intracellular survival autophagy xenophagy calpain

Colony contact contributes to the diversity of gut bacteria in bumblebees （Bombus terrestris）

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Insect Science 2017年第2期24卷 270-277页

作者： annelies Billiet Ivan Meeus Filip Van Nieuwerburgh Dieter Deforce Felix Wackers Guy Smagghe Laboratory of Agrozoology Department of Crop Protection Faculty of Bioscience Engineering Ghent University B-9000 Ghent Laboratory of Pharmaceutical Biotechnology Faculty of Pharmaceutical Sciences Ghent University B-9000 Ghent BiobestNV B-2260 Westerlo Belgium

Social bees, like honeybees and bumblebees, have a close contact with nest mates of different developmental stages and generations. This could enhance bacterial transfer between nest mates and offers opportunities for direct transfer of symbionts from one generation to the next, resulting in a stable host specific gut microbiota. Gut sym- bionts of honeybees and bumblebees have been suggested to contribute in digestion and protection against parasites and pathogens. Here we studied the impact of contact with the bumblebee colony on the colonization potential of the bacterial families （i.e., Neisseri- aceae, Orbaceae, Lactobacillaceae and Bifidobacteriaceae） occurring in the gut of adult bumblebees （Bombus terrestris）. Bacterial profiles of the gut microbiota of B. terrestris were determined based on the hypervariable V4 region of the 16S rRNA using paired-end Illumina sequencing. In our experiments, we created different groups in which we grad- ually reduced the contact with nest mates and hive material. We made 3 observations：（i） reducing the contact between the colony and the bumblebee during adult life resulted in a significant drop in the relative abundance ofLactobacillus bombicola and Lactobacillus bombi; （ii） Bifidobacteriaceae required contact with nest mates to colonize the gut of B. terrestris and a significant lower bacterial diversity was observed in bumblebees that were completely excluded from colony contact during the adult life; （iii） Snodgrassella and Gilliamella were able to colonize the gut of the adult bumblebee without any direct contact with nest mates in the adult life stage. These results indicate the impact of the colony life on the diversity of the characteristic bumblebee gut bacteria.

关键词： bacterial transfer bumblebee gut Illumina sequencing microbiota social

Mainstreaming the nexus approach in climate services will enable coherent local and regional climate policies

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Advances in Climate Change Research 2021年第5期12卷 752-755页

作者： Nicu Constantin TUDOSE Roger CREMADES annelies BROEKMAN Anabel SANCHEZ-PLAZA Hermine MITTER Mirabela MARIN National Institute for Research and Development in Forestry“Marin Dracea”(INCDS) Ilfov County077190Romania Wageningen University and Research Leeuwenborch BuildingWageningenKN6706the Netherlands Climate Service Center Germany(GERICS) Hamburg20095Germany CREAF Centre de Recerca Ecològica i Aplicacions ForestalsCataloniaE08193Spain Institute for Sustainable Economic Development Department of Economics and Social SciencesUniversity of Natural Resources and Life SciencesVienna1180Austria Transilvania University of Brașov Brasov500036Romania

The current challenges that society faces call for actions fostering climate change adaptation and long-term sustainability grounded in effective policies. Consequently, to raise environmental resilience and sustain human wellbeing, we need to overhaul the policy-making process towards a ‘holistic approach’. The nexus approach has proven a valuable tool for identifying gaps and incoherencies in current policies, for understanding major interlinkages across sectors and scales, and for promoting the Sustainable Development Goals (SDGs). Nevertheless, a ‘silo approach’ to decision making currently prevails, thus achieving cross-sectoral and cross-scale harmonization still remains a challenge in policy-making. In response to this challenge, the next step in the science–policy–practice interface is to integrate the nexus approach in the ‘climate services’ arena, in order to support integrated policies. Climate services embody a bridge between researchers and stakeholders, and by supporting integrated policies they will ensure synergies between sectors and scales, reduce potential trade-offs, and enable co-benefits.

关键词： Stakeholders Nexus Climate services Cross-sectoral policies Climate resilience

iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community

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Molecular Plant 2019年第6期12卷 727-730页

作者： Pascal falter-Braun Siobhan Brady Rodrigo A.Gutierrez Gloria M.Coruzzi Gabriel Krouk Institute of Network Biology (INET) Helmholtz Zentrum Munchen (HMGU) 85764 Munchen-Neuherberg Germany Microbe-Host Interactions Faculty of Biology. Ludwig-Maximilians-University (LMU) Munich 82152 Planegg-Martinsried Germany Department of Plant Biology and the Genome Center University of California Davis CA 95616 USA Departamento de Genetica Molecular y Microbiologia FONDAP Center for Genome Regulation Millennium Institute for Integrative Biology Pontificia Universidad Catolica de Chile Santiago 8331150 Chile Center for Genomics and Systems Biology Department of Biology New York University New York NY 10003 USA B&PMP Univ Montpellier CNRS INRA SupAgro Montpellier France

sequenced genome of a multicellular organism (Arabidopsis Genome, 2000) completed just after those of the nematode Caenorhabditis elegans (C. elegans Sequencing Consortium, 1998) and the fruit fly Drosophila melanogaster (Adams et al., 2000). Availability of a full whole-genome sequence for the reference plant opened to plant biologists what is commonly called the post-genomic era.

关键词： Systems Biology International Network Hub Plant Community

Consolidating Contestation and Conflict through Community-Based Adaptation (CBA)

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Journal of Geoscience and Environment Protection 2017年第11期5卷 174-193页

作者： Sebastiaan Soeters annelies Zoomers Faculty of Geosciences Universiteit Utrecht Willem C. van Unnikgebouw Heidelberglaan Utrecht The Netherlands

This article, based on fieldwork in Ghana, Burkina Faso and Kenya, provides an overview of different types of climate change adaptation interventions that are currently being implemented to enhance local community’s adaptive capacity and resilience. We show that CBA interventions, whilst measurably successful from the interventionist perspective, are often structured to cause new scarcities, competing claims and ultimately, various forms and intensities of conflict. We conclude that, instead of targeting “communities” or other groups of “beneficiaries”, the inter-connectedness of multiple (and at times competing) social groups (men and women, the elderly and youth, hunters, loggers, pastoralists and sedentary crop farmers etc.) in relation to the use and distribution of natural resources should be the point of departure for strengthening resilience and adaptive capacity.

关键词： Climate Change Adaptation Community-Based Adaptation Exclusion Conflicts Resilience Social Capital Kenya Ghana and Burkina