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Metabolomics for the diagnosis of bladder cancer: A systematic review

Asian Journal of Urology 2024年第2期11卷 221-241页

作者： Herney andrés garcía-Perdomo Angélica María Dávila-Raigoza Fernando Korkes Division of Urology/Urooncology Department of SurgerySchool of MedicineUniversidad del ValleCaliColombia UROGIV Research Group School of MedicineUniversidad del ValleCaliColombia Urologic Oncology Division of UrologyABC Medical SchoolSao PauloBrazil

Objective: Metabolomics has been extensively utilized in bladder cancer (BCa) research, employing mass spectrometry and nuclear magnetic resonance spectroscopy to compare various variables (tissues, serum, blood, and urine). This study aimed to identify potential biomarkers for early BCa ***: A search strategy was designed to identify clinical trials, descriptive and analytical observational studies from databases such as Medline, Embase, Cochrane Central Register of Controlled Trials, and Latin American and Caribbean Literature in Health sciences. Inclusion criteria comprised studies involving BCa tissue, serum, blood, or urine profiling using widely adopted metabolomics techniques like mass spectrometry and nuclear magnetic resonance. Primary outcomes included description of metabolites and metabolomics profiling in BCa patients and the association of metabolites and metabolomics profiling with BCa diagnosis compared to control patients. The risk of bias was assessed using the Quality Assessment of studies of Diagnostic ***: The search strategy yielded 2832 studies, of which 30 case-control studies were included. Urine was predominantly used as the primary sample for metabolite identification. Risk of bias was often unclear inpatient selection, blinding of the index test, and reference standard assessment, but no applicability concerns were observed. Metabolites and metabolomics profiles associated with BCa diagnosis were identified in glucose, amino acids, nucleotides, lipids, and aldehydes ***: The identified metabolites in urine included citric acid, valine, tryptophan, taurine, aspartic acid, uridine, ribose, phosphocholine, and carnitine. Tissue samples exhibited elevated levels of lactic acid, amino acids, and lipids. Consistent findings across tissue, urine, and serum samples revealed downregulation of citric acid and upregulation of lactic acid, valine, tryptophan, taurine, glutamine, aspartic acid, uridine, rib

关键词： Metabolite Metabolomics Bladder cancer Metabolomicsprofile

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Engineering of immunoinstructive extracellular matrices for enhanced osteoinductivity

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Bioactive Materials 2023年第6期24卷 174-184页

作者： andrés garcía-garcía sébastien Pigeot Ivan Martin Department of Biomedicine University Hospital BaselUniversity of Basel4031BaselSwitzerland Department of Biomedical Engineering University of Basel4123AllschwillSwitzerland

The increasing recognition of the contribution of the immune system to activate and prime regeneration implies that tissue engineering strategies and biomaterials design should target regulation of early immunological *** previously proposed the cell-based engineering and devitalization of extracellular matrices(ECMs)as a strategy to generate implant materials delivering custom-defined ***,in the context of bone regeneration,we aimed at enhancing the osteoinductivity of such ECMs by enriching their immunomodulatory factors *** with IL1βa cell line overexpressing BMP-2 enabled engineering of ECMs preserving osteoinductive signals and containing larger amounts of angiogenic(VEGF)and pro-inflammatory molecules(IL6,IL8 and MCP1).Upon implantation,these IL1β-induced materials enhanced processes typical of the inflammatory phase(e.g.,vascular invasion,osteoclast recruitment and differentiation),leading to‘regenerative’events(e.g.,M2 macrophage polarization)and ultimately resulting in faster and more efficient bone *** results bear relevance towards the manufacturing of potent off-the-shelf osteoinductive materials and outline the broader paradigm of engineering immunoinstructive implants to enhance tissue regeneration.

关键词： Immunomodulation Bone tissue engineering Inflammation Hypertrophic cartilage matrices Osteoinduction

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Vegetation recovery after fire in mountain grasslands of Argentina

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Journal of Mountain science 2020年第2期17卷 373-383页

作者： Alejandro LOYDI Flavia AFUNK andrés garcía Renewable Natural Resources Center of the semi-Arid Zone(CERZOs)–CONICET-UNs Bahia BiancaArgentina Department of Biology Biochemistry and PharmacySouth National UniversityBahfa BiancaArgentina Argentine Institute of Oceanography(IADO) CONICET-UNSBahia BlancaArgentina

Fire is a natural disturbance occurring every few years in many grasslands ecosystems. However, since European colonization, fire has been highly reduced or even suppressed in Argentinean grasslands, fostering ignitable material accumulation. This has led to occasional catastrophic controldemanding fire events, extended for larger areas. The aims of this work are to study vegetation recovery and change after a non-natural fire event in mountain grasslands. The study area is located in the Ventania mountain system, mid-eastern Argentina. We studied vegetation recovery after fire(January 2014) in two different communities: grass-steppes(grasslands) and shrub-steppes(open low shrublands). We measured vegetation cover, species richness and bare ground percentage in burned and unburned areas 1, 4, 8, 11 and 23 months after fire. Vegetation surveys were also performed at the end of the growing season(December) 11 and 23 months after fire. Data were analyzed using regression analysis, ANOVA and multivariate analysis(NMs, PERMANOVA). Both communities increased their vegetation cover at the same rate, without differences between burned and unburned areas after two years. species richness was higher in shrublands and their recovery was alsofaster than in grasslands. Considering functional composition, besides transient changes during the first year after fire, there were no differences in abundance of different functional vegetation groups two years after fire. At the same time, shrublands showed no differences in species composition, while grasslands had a different species composition in burned and unburned plots. Also, burned grassland showed a higher species richness than unburned grassland. Data shown mountain vegetation in Pampas grassland is adapted to fire, recovering cover and richness rapidly after fire and thus reducing soil erosion risks. Vegetation in mountain Pampas seems to be well adapted to fire, but in grasslands species composition has changed due to fire.

关键词： Amelichloa caudata Forbs Grass Natural grassland Nassella trichotoma Piedmont valleys shrubs sierra de la Ventana Vegetation functional groups

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ZigID:Improving visibility in industrial environments by combining WsN and RFID

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Journal of Zhejiang University-science A(Applied Physics & Engineering) 2011年第11期12卷 849-859页

作者： Pablo garcíA ANsOLA andrés garcía Javier de las MORENAs Javier garcíA EsCRIBANO Francisco Javier OTAMENDI Autolog Labs School of Industrial EngineeringUniversity of Castilla-La Mancha Applied Economic Department University Rey Juan Carlos

The objective of this work is to provide decision-making processes with an updated/real picture of the mobile resources in industrial environments through a constant feedback of *** combination of identification technologies and wireless sensor networks(WsN) is proposed as a key development to guarantee an accurate and timely supply of online information regarding the localization and tracking of the mobile wireless *** approach uses a cooperative and distributed localization system,called ZigID,which is a WsN based on a Zigbee network with radio frequency identification(RFID) active tags as end *** WsN can recover not only the ID information stored at the tags attached to mobile resources,but also any other useful data captured by specific sensors for acceleration,temperature,humidity and fuel *** paper also shows the development of ZigID,including devices and information flows,as well as its implementation in ground handling operations at the Ciudad Real Central Airport,spain.

关键词： Radio frequency identification(RFID) Tracking Wireless sensor networks(WsNs)

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Parallel droplet microfluidics for high throughput cell encapsulation and synthetic microgel generation

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Microsystems & Nanoengineering 2018年第1期4卷 525-533页

作者： Devon M.Headen JoséR.garcía andrés J.garcía Woodruff school of Mechanical Engineering Georgia Institute of TechnologyAtlantaGA 30332USA Petit Institute for Bioengineering and Biosciences Georgia Institute of TechnologyAtlantaGA 30332USA

Cells can be microencapsulated in synthetic hydrogel microspheres(microgels)using droplet microfluidics,but microfluidic devices with a single droplet generating geometry have limited throughput,especially as microgel diameter *** we demonstrate microencapsulation of human mesenchymal stem cells(hMsCs)in small(o100μm diameter)microgels utilizing parallel droplet generators on a two-layer elastomer device,which has 600% increased throughput ***-nozzle *** of microgel diameters were compared between products of parallel ***-nozzle configurations for two square nozzle widths,35 and 100μ*** produced on parallel nozzles were equivalent to those produced on single nozzles,with substantially the same *** of hMsCs was compared for parallel nozzle devices of each *** five micrometer wide nozzle devices could be operated at twice the cell concentration of 100μm wide nozzle devices but produced more empty microgels than predicted by a Poisson *** micrometer wide nozzle devices produced microgels as predicted by a Poisson *** of microgels did not increase with the addition of cells for either nozzle *** encapsulated on 35μm wide nozzle devices had reduced viability(~70%)and a corresponding decrease in vascular endothelial growth factor(VEGF)secretion compared to hMsCs cultured on tissue culture(TC)*** hMsCs using 100μm wide nozzle devices mitigated loss of viability and function,as measured by VEGF secretion.

关键词： droplets microencapsulation microgel multilayer parallel

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Improving georeferencing accuracy of Very High Resolution satellite imagery using freely available ancillary data at global coverage

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International Journal of Digital Earth 2017年第10期10卷 1055-1069页

作者： Manuel A.Aguilar Abderrahim Nemmaoui Fernando J.Aguilar Antonio Novelli andrés garcía Lorca Department of Engineering University of AlmeríaAlmeríaSpain DICATECh Politecnico di BariBariItaly Department of Geography University of AlmeríaAlmeríaSpain

While impressive direct geolocation accuracies better than 5.0 m CE90(90%of circular error)can be achieved from the last DigitalGlobe’s Very High Resolution(VHR)satellites(***-1 and WorldView-1/2/3/4),it is insufficient for many precise geodetic *** these sensors,the best horizontal geopositioning accuracies(around 0.55 m CE90)can be attained by using third-order 3D rational functions with vendor’s rational polynomial coefficients data refined by a zero-order polynomial adjustment obtained from a small number of very accurate ground control points(GCPs).However,these high-quality GCPs are not always *** this work,two different approaches for improving the initial direct geolocation accuracy of VHR satellite imagery are *** of them are based on the extraction of three-dimensional GCPs from freely available ancillary data at global coverage such as multi-temporal information of Google Earth and the shuttle Radar Topography Mission 30 m digital elevation *** application of these approaches on WorldView-2 and GeoEye-1 stereo pairs over two different study sites proved to improve the horizontal direct geolocation accuracy values around of 75%.

关键词： Very High Resolution satellite images Google Earth WorldView-2 GeoEye-1 geometric accuracy

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Improvement of sporulation Conditions of a New strain of Bacillus amyloliquefaciens in Liquid Fermentation

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Advances in Bioscience and Biotechnology 2015年第4期6卷 302-310页

作者： andrés Díaz-garcía Jennifer garcía-Riano Jimmy Zapata-Narvaez Biological Control Laboratory Tibaitata Research CenterColombian Corporation for Agricultural Research(Corpoica)BogotáColombia

The desirable active ingredients for the development of bioproducts based in Bacillus sp. for the control of soil pathogens are the spores because these structures exhibit more resistance and stability to conditions present during the fermentation, formulation, and storage processes. To improve the sporulation of a native strain of Bacillus amyloliquefaciens (Bs006) using liquid fermentation, some modifications in the concentrations of the components in a previously standardized culture media were made. subsequently, five sporulation inducers (iron nitrate, mixture of salts, peroxide hydrogen, temperature, and initial cell concentration) were evaluated. The treatment with a mixture of salts in combination with an initial cell concentration of 1 × 108 cells/ml was selected because a final spore concentration of 1.05 × 1010 spores/ml after 66 hours with a fully substrate consumption and sporulation efficiency of 88.7% was obtained. To demonstrate the biological activity of B. amyloliquefaciens Bs006 in Cape gooseberry seedlings, a greenhouse bioassay was conducted, and statistical differences in plant growth-promoting parameters compared with previous media were not found. Additionally, the proposed modified media (coded as JM) presented a benefit-cost ratio 2.65 times higher compared with the baseline media.

关键词： Bacillus amyloliquefaciens sporulation Induction Liquid Media Design Cape Gooseberry Plant Growth Promotion

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Litterfall production modeling based on climatic variables and nutrient return from stands of Eucalyptus grandis Hill ex Maiden and Pinus taeda L.

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Journal of Forestry Research 2024年第5期35卷 26-36页

作者： andrés Baietto andrés Hirigoyen Jorge Hernández Amabelia del Pino Forest Department Faculty of AgronomyUniversity of the Republic12900 MontevideoUruguay National Research Program of Forest Production National Agriculture Research InstituteINIA97000 TacuarembóUruguay soil and Water Department Faculty of AgronomyUniversity of the Republic12900 MontevideoUruguay

Native grasslands in the Pampas of south America are increasingly being replaced by Eucalyptus and Pinus *** short rotation regimes used for the stands require high nutrient levels,with litterfall being a major source of nutrient *** model the litterfall production using climatic variables and assess the nutrient return in 14-year-old Eucalyptus grandis and Pinus taeda stands,we measured litter production over 2 years,using conical litter traps,and monitored climatic *** temperature,accumulated precipitation,and mean maximum vapor pres-sure deficit at the seasonal level influenced litterfall produc-tion by ***;seasonal accumulated precipitation and mean maximum temperature affected litterfall by *** regression tree modeling based on these climatic vari-ables had great accuracy and predictive power for ***(N=33;MAE(mean absolute error)=0.65;RMsE(root mean square error)=0.91;R^(2)=0.71)and ***(N=108;MAE=1.50;RMsE=1.59;R^(2)=0.72).The nutrient return followed a similar pattern to litterfall deposition,as well as the order of importance of macronutrients(***:Ca>N>K>Mg>P;***:N>Ca>K>Mg>P)and micronutrients(*** and ***:Mn>Fe>Zn>Cu)in both *** study constitutes a first approximation of factors that affect litterfall and nutrient return in these systems.

关键词： Afforestation Litterfall Nutrient recycling Climate modeling Myrtaceae Pinaceae

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Importance of defining the best treatment of a genital gunshot wound: A case report

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World Journal of Clinical Cases 2014年第10期2卷 587-590页

作者： Herney andrés garcía-Perdomo school of Medicine Faculty of Health University of Valle

Twenty percent of genital traumas are caused by penetrating injuries; accordingly gunshot and stab wounds have increased in the last couple of years around the globe, even in Colombia. A 67-year-old male patient was admitted to the emergency room because he received multiple gunshot wounds. On physical examination, multiple wounds on his penis with loss of tissue in the foreskin, glans, anterior urethra(distal third) and cavernous corpora were found. The urologist performed a partial penectomy with a penis reconstruction, he debrided the cutaneous flap of the dorsal foreskin and its glans, sutured the distal cavernous corpora and dissected the urethra. Penetrating genital injuries are extremely important due to their impact on the functional, psychological and the aesthetic consequences. It is necessary to define the best possible treatment to minimize the damage.

关键词： Genital Penile Injuries Trauma Amputation

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Geochemical elements in suspended particulate matter of Ensenada de La Paz Lagoon,Baja California Peninsula,Mexico:sources,distribution,mass balance and ecotoxicological risks

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Journal of Environmental sciences 2024年第2期136卷 422-436页

作者： sandra soledad Morales-garcía Pilar de Acacia Pérez-Escamilla suresh Babu sujitha Pichaimani Godwyn-Paulson andrés Felipe Zuniga-Cabezas Muthuswamy Ponniah Jonathan Instituto Politécnico Nacional(IPN) Centro Mexicano para la Producción más Limpia(CMPL)Av.Acueducto s/nCol.Barrio la Laguna TicománDel Gustavo A.MaderoC.P.07340Ciudad de MéxicoMexico Instituto Politécnico Nacional(IPN) Escuela Superior de Ingeniería y Arquitectura(ESIA)Unidad Ticomán***án 600Delg.Gustavo A.MaderoC.P.07340Ciudad de México(CDMX)Mexico Instituto Politécnico Nacional(IPN) Centro Interdisciplinario de Investigaciones y Estudios sobre Medio Ambiente y Desarrollo(CIIEMAD)Calle 30 de Junio de 1520Barrio la Laguna TicománDel.Gustavo A.MaderoC.P.07340Ciudad de MéxicoMéxico

The present study aimed to evaluate multi-element concentrations(Al,As,Ca,Cd,Co,Cr,Cu,Fe,Mg,Mn,Mo,Ni,Pb,sr)in suspended particulate material(sPM)collected from Ensenada de La Paz(ELP)lagoon,Baja California sur,Mexico in two different periods(september and May)to comprehend their origin,geochemical behavior,mass transfer and associated ecotoxicological *** 24 hr variation coefficient of volumetric sPM levels were found to be 51.7%in september and 40.5%in May,signifying the effects of oceanic *** calculated enrichment factor(EF)values for all the studied elements were of higher magnitude because of the high surface area and oxide nature of sPM,and in this study,Mo had the highest EF of 46.77 probably due to its origin from continental *** the ecotoxicological perspective,the integrated toxic risk index revealed low toxic risk to the benthic ***,the mean-ERM-Quotient calculated using the particulate concentrations of As,Cd,Cr,Cu,Ni,Pb indicated 9%probability of toxicity to *** comprehensive geochemical and ecotoxicological assessment of particulate metal concentrations in the ELP lagoon signify low to moderate contamination.

关键词： suspended particulate material Heavy metals Risk assessment Mass transfer Ensenada de La Paz

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