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Mechanistic insights toward identification and interaction of plant parasitic nematodes:A review

Soil Ecology Letters 2024年第1期6卷 11-27页

作者： Bisma Jan ali haider Shah Mudasir Ahmad Bhat Arif Tasleem Jan Ishfaq Ahmad Wani ali Asghar Shah Section of Microbiology Baba Ghulam Shah Badshah UniversityRajouriJ&K185234India Department of Biotechnology Baba Ghulam Shah Badshah University RajouriJ&K185234India Department of Botany Baba Ghulam Shah Badshah University RajouriJ&K185234India Department of Zoology School of Biosciences and BiotechnologyBaba Ghulam Shah Badshah University RajouriJ&K185234India

Nematode identification serves as an important param-eter to study their behaviour,importance and *** of classical morphometric based identifica-tion methods prove to be lacking due to insufficient knowledge on morphological variations among closely related *** approaches such as DNA and protein-based information,microarray,probing,sequence-based methods and others have been used to supplement morphology-based methods for nematode *** and certain protein-based nematode-associated molecular patterns(NAMPs),can be perceived by the host plants,and can initiate a signalling *** review primarily emphasizes on an updated account of different classical and modern tools used for the identification of *** we also summa-rize the mechanism of some important signalling pathways which are involved in the different plant nematode *** constitute most diverse and least studied group of soil inhabiting *** are ecologically and physiologically important,however,wide range of nematodes show harmful impact on the individuals that live within their *** parasitic nematodes(PPNs)are transparent,pseudocoelomate,free living or parasitic *** lack morphometric identification methods due to insufficient knowl-edge on morphological variations among closely related *** such,molecular approaches such as DNA and protein-based information,microarray,probing,sequence-based methods and others have been used to supplement morphology-based methods for their *** invade the defense response of different plant species,parasitic nematodes have evolved different molecular *** and certain protein-based nematode-associated molecular patterns(NAMPs),can be perceived by the host plants,and can initiate a signaling *** overcome the host confrontation and develop certain nematode feeding sites,some members can inject effectors into

关键词： nematode identification plant nematode interaction DNA fingerprinting nematode-associated molecular patterns signaling path-ways

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Experimental and computational study of annealed nickel sulfide quantum dots for catalytic and antibacterial activity

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Nano Materials Science 2024年第3期6卷 355-364页

作者： Muhammad Ikram Sawaira Moeen ali haider Anwar Ul-Hamid Haya Alhummiany Hamoud H.Somaily Souraya Goumri-Said Mohammed Benali Kanoun Solar Cell Applications Research Lab Department of PhysicsGovernment College University LahoreLahore54000PunjabPakistan Department of Clinical Sciences Faculty of Veterinary and Animal SciencesMuhammad Nawaz ShareefUniversity of Agriculture66000MultanPunjabPakistan Core Research Facilities King Fahd University of Petroleum&MineralsDhahran31261Saudi Arabia Department of Physics Faculty of ScienceUniversity of JeddahP.O.Box 13151Jeddah21493Saudi Arabia Department of Physics Faculty of ScienceKing Khalid UniversityP.O.Box 9004AbhaSaudi Arabia Physics Department College of Science and General StudiesAlfaisal UniversityP.O.Box 50927Riyadh11533Saudi Arabia Department of Mathematics and Sciences College of Humanities and SciencesPrince Sultan UniversityP.O.Box 66833Riyadh11586Saudi Arabia

This research investigates the hydrothermal synthesis and annealing duration effects on nickel sulfide(NiS_(2) quantum dots(QDs)for catalytic decolorization of methylene blue(MB)dye and antimicrobial *** size increased with longer annealing,reducing catalytic ***–vis,XRD,TEM,and FTIR analyses probed optical structural,morphological,and vibrational *** confirmed NiS2's anorthic structure,with crystallite size growing from 6.53 to 7.81 nm during extended ***–Vis exhibited a bathochromic shift,reflecting reduced band gap energy(Eg)in NiS_(2).TEM revealed NiS_(2)QD formation,with agglomerated QD average size increasing from 7.13 to 9.65 nm with prolonged *** NiS_(2) showed significant MB decolorization(89.85%)in acidic *** NiS_(2) QDs demonstrated notable antibacterial activity,yielding a 6.15mm inhibition zone against Escherichia coli(***)compared to ***-principles computation supported a robust interaction between MB and NiS_(2),evidenced by obtained adsorption *** study highlights the nuanced relationship between annealing duration,structural changes,and functional properties in NiS_(2)QDs,emphasizing their potential applications in catalysis and antibacterial interventions.

关键词： NiS_(2) antibacterial quantum dots dye degradation DFT

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Deep Learning Based Classification of Wrist Cracks from X-ray Imaging

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Computers, Materials & Continua 2022年第10期73卷 1827-1844页

作者： Jahangir Jabbar Muzammil Hussain Hassaan Malik Abdullah Gani ali haider Khan Muhammad Shiraz Department of Computer Science National College of Business Administration&Economics LahoreMultan60000Pakistan Department of Computer Science School of Systems and TechnologyUniversity of Management and TechnologyLahore54000Pakistan Faculty of Computing and Informatics University of Malaysia SabahJalan UMSKota Kinabalu88400SabahMalaysia Department of Computer Science Federal Urdu University of ArtsScience and TechnologyIslamabadPakistan

Wrist cracks are the most common sort of cracks with an excessive occurrence *** the routine detection of wrist cracks,conventional radiography(X-ray medical imaging)is used but periodically issues are presented by crack *** cracks often appear in the human arbitrary bone due to accidental injuries such as ***,many hospitals lack experienced clinicians to diagnose wrist ***,an automated system is required to reduce the burden on clinicians and identify *** this study,we have designed a novel residual network-based convolutional neural network(CNN)for the crack detection of the *** the classification of wrist cracks medical imaging,the diagnostics accuracy of the RN-21CNN model is compared with four well-known transfer learning(TL)models such as Inception V3,Vgg16,ResNet-50,and Vgg19,to assist the medical imaging technologist in identifying the cracks that occur due to wrist *** RN-21CNN model achieved an accuracy of 0.97 which is much better than its competitor`s *** results reveal that implementing a correct generalization that a computer-aided recognition system precisely designed for the assistance of clinician would limit the number of incorrect diagnoses and also saves a lot of time.

关键词： Wrist cracks fracture deep learning X-rays CNN

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Spatial Correlation Module for Classification of Multi-Label Ocular Diseases Using Color Fundus Images

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Computers, Materials & Continua 2023年第7期76卷 133-150页

作者： ali haider Khan Hassaan Malik Wajeeha Khalil Sayyid Kamran Hussain Tayyaba Anees Muzammil Hussain Department of Software Engineering Faculty of Computer SciencesLahore Garrison UniversityLahorePakistan Department of Computer Science School of Systems and TechnologyUniversity of Management and TechnologyLahore54000Pakistan Department of Computer Science&Information Technology University of Engineering and Technology(UET)PeshawarPakistan Department of Computer Science TIMES InstituteMultan60000Pakistan Department of Software Engineering School of Systems and TechnologyUniversity of Management and TechnologyLahore54000Pakistan

To prevent irreversible damage to one’s eyesight,ocular diseases(ODs)need to be recognized and treated *** fundus imaging(CFI)is a screening technology that is both effective and *** to CFIs,the early stages of the disease are characterized by a paucity of observable symptoms,which necessitates the prompt creation of automated and robust diagnostic *** traditional research focuses on image-level diagnostics that attend to the left and right eyes in isolation without making use of pertinent correlation data between the two sets of *** addition,they usually only target one or a few different kinds of eye diseases at the same *** this study,we design a patient-level multi-label OD(PLML_ODs)classification model that is based on a spatial correlation network(SCNet).This model takes into consideration the relevance of patient-level diagnosis combining bilateral eyes and multi-label ODs ***_ODs is made up of three parts:a backbone convolutional neural network(CNN)for feature extraction i.e.,DenseNet-169,a SCNet for feature correlation,and a classifier for the development of classification *** DenseNet-169 is responsible for retrieving two separate sets of attributes,one from each of the left and right *** then,the SCNet will record the correlations between the two feature sets on a pixel-by-pixel *** the attributes have been analyzed,they are integrated to provide a representation at the patient *** the whole process of ODs categorization,the patient-level representation will be *** efficacy of the PLML_ODs is examined using a soft margin loss on a dataset that is readily accessible to the public,and the results reveal that the classification performance is significantly improved when compared to several baseline approaches.

关键词： Ocular disease multi-label spatial correlation CNN eye disease

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A Compact 28 GHz Millimeter Wave Antenna for Future Wireless Communication

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Computers, Materials & Continua 2022年第7期72卷 301-314页

作者： Shahid Khan Adil Bashir haider ali Abdul Rauf Mohamed Marey Hala Mostafa Ikram Syed LCOMS ASECUniversity de LorraineMetz57070France Department of Electrical and Computer Engineering Comsats University IslamabadAbbottabad Campus22060Pakistan Electrical Engineering Department Bahauddin Zakariya UniversityMultan60800Pakistan Department of Electronics Technology University of TechnologyNowshera24100Pakistan Department of Electrical Engineering National University of Sciences and TechnologyH-12Islamabad44000Pakistan Smart Systems Engineering Laboratory College of EngineeringPrince Sultan UniversityRiyadh11586Saudi Arabia Department of Information Technology College of Computer and Information SciencesPrincess Nourah bint Abdulrahman UniversityP.O.Box 84428Riyadh11671Saudi Arabia Computer Software Engineering Military College of SignalsNational University of Sciences and TechnologyIslamabad44000Pakistan

This article presents a novel modified chuck wagon dinner bell shaped millimeter wave(mm-wave)antenna at 28 *** proposed design has ultra-thin Rogers 5880 substrate with relative permittivity of *** design consists of T shaped resonating elements and two open ended side *** desired 28 GHz frequency response is achieved by careful parametric modeling of the proposed *** maximum achieved single element gain at the desired resonance frequency is 3.45 *** efficiency of the proposed design over the operating band is more than 88%.The impedance bandwidth achieved for−10 dB reference value is nearly 2.9 *** proposed antenna is transformed into four element linear array which increases the gain up to 10.5 *** fabricated prototype is tested for the measured *** is observed that measured results closely match the simulated *** considering its simple structure and focused radiation patterns,the proposed design is well suited for IoT(Internet of Things),mmWave microwave sensing,5G and future RF(Radio Frequency)frontends.

关键词： RF front-ends mmWave partial ground plane 28 GHz IoT 5G antenna

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Deep Learning with a Novel Concoction Loss Function for Identification of Ophthalmic Disease

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Computers, Materials & Continua 2023年第9期76卷 3763-3781页

作者： Sayyid Kamran Hussain ali haider Khan Malek Alrashidi Sajid Iqbal Qazi Mudassar Ilyas Kamran Shah Department of Computer Science TIMES InstituteMultan60000Pakistan Department of Software Engineering Faculty of Computer ScienceLahore Garrison UniversityLahore54000Pakistan Department of Computer Science Applied CollegeUniversity of TabukTabukSaudi Arabia Department of Information Systems College of Computer Sciences and Information TechnologyKing Faisal UniversityAl Hofuf31982Saudi Arabia Department of Mechanical Engineering College of EngineeringKing Faisal UniversityAl HofufSaudi Arabia

As ocular computer-aided diagnostic(CAD)tools become more widely accessible,many researchers are developing deep learning(DL)methods to aid in ocular disease(OHD)*** eye diseases like cataracts(CATR),glaucoma(GLU),and age-related macular degeneration(AMD)are the focus of this study,which uses DL to examine their *** imbalance and outliers are widespread in fundus images,which can make it difficult to apply manyDL algorithms to accomplish this analytical *** creation of efficient and reliable DL algorithms is seen to be the key to further enhancing detection *** the analysis of images of the color of the retinal fundus,this study offers a DL model that is combined with a one-of-a-kind concoction loss function(CLF)for the automated identification of *** study presents a combination of focal loss(FL)and correntropy-induced loss functions(CILF)in the proposed DL model to improve the recognition performance of classifiers for biomedical *** is done because of the good generalization and robustness of these two types of losses in addressing complex datasets with class imbalance and *** classification performance of the DL model with our proposed loss function is compared to that of the baseline models using accuracy(ACU),recall(REC),specificity(SPF),Kappa,and area under the receiver operating characteristic curve(AUC)as the evaluation *** testing shows that the method is reliable and efficient.

关键词： Deep learning multi-classification focal loss CNN eye disease

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Antagonistic Potential of Bacterial Species against Fungal Plant Pathogens(FPP)and Their Role in Plant Growth Promotion(PGP):A Review

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Phyton-International Journal of Experimental Botany 2022年第9期91卷 1859-1877页

作者： Amjad ali Yasir Iftikhar Mustansar Mubeen haider ali Muhammad Ahmad Zeshan Zohaib Asad Muhammad Zafar-ul-Hye Malik Abdul Rehman Mazhar Abbas Muhammad Rafique Muhammad Usman Ghani Department of Plant Protection Sivas University of Science and TechnologySivas58140Turkey Department of Plant Pathology College of AgricultureUniversity of SargodhaSargodha40100Pakistan College of Bioscience University of BirminghamBirminghamB152TTUK Department of Plant Pathology PMAS University of Arid AgricultureRawalpindi43490Pakistan Department of Soil Science Faculty of Agricultural Sciences and TechnologyBahauddin Zakariya UniversityMultan60800Pakistan Citrus Research Institute Sargodha40100Pakistan Department of Agriculture and Agribusiness Management University of Karachi75270KarachiPakistan Pest warning&Quality Control of Pesticides SahiwalPunjab40210Pakistan Institute of Soil and Environmental Sciences University of AgricultureFaisalabad38000Pakistan

Since the 19th century to date,the fungal pathogens have been involved in causing devastating diseases in *** types of fungal pathogens have been observed in important agricultural crops that lead to significant pre and postharvest *** application of synthetic fungicide against the fungal plant pathogens(FPP)is a traditional management practice but at the same time these fungicides kill other beneficial microbes,insects,animal,and humans and are harmful to *** antagonistic microorganism such as bacteria are being used as an alternate strategy to control the *** antagonistic species are cost-effective and eco-friendly in *** biocontrol bacteria have a broad mechanism against fungal pathogens present in the phyllosphere and rhizosphere of the *** antagonistic bacteria have different strategies against the FPP,by producing siderophore,biofilm,volatile organic compounds(VOCs),through parasitism,antibiosis,competition for limited resources and induce systemic resistance(ISR)in the host plant by activating the immune *** commercial bio-products synthesized by the major bacterial species Pseudomonas syringae,Burkholderia cepacia,Streptomyces griseoviridis,Pseudomonas fluorescens and Bacillus subtilis are used to control Fusarium,Pythium,Rhizoctonia,Penicillium,Alternaria,and *** commercial bio-formulations of bacteria act as both antifungal and plant growth *** Plant growth-promoting rhizobacteria(PGPR)played a significant role in improving plant health by nitrogen-fixing,phosphorus solubilization,phytohormones production,minimizing soil metal contamination,and by ACC deaminase antifungal *** articles are available on the specific antifungal activity of bacteria in plant ***,this review article has summarized the information on biocontrol activity of bacteria against the FPP and the role of PGPR in plant growth *** review also provided a complete picture

关键词： Fungi plant pathogens synthetic fungicide antagonism bio-products PGPR

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Papaya Ring Spot Virus:An Understanding of a Severe Positive-Sense Single Stranded RNA Viral Disease and Its Management

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Phyton-International Journal of Experimental Botany 2022年第10期91卷 2099-2110页

作者： Muhammad Umer Mustansar Mubeen Yasir Iftikhar haider ali Muhammad Zafar-ul-Hye Rafia Asghar Mazhar Abbas Malik Abdul Rehman Ernesto A.Moya-Elizondo Yuejun He Institute for Forest Resources and Environment of Guizhou and Forestry College Research Centre of Forest EcologyGuizhou UniversityGuiyang550025China Department of Plant Pathology College of AgricultureUniversity of SargodhaSargodha40100Pakistan College of Bioscience University of BirminghamBirminghamB152TTUK Department of Soil Science Faculty of Agricultural Sciences and TechnologyBahauddin Zakariya UniversityMultan60800Pakistan Department of Plant Pathology PMAS University of Arid AgricultureRawalpindi43490Pakistan Department of Agriculture and Agribusiness Management University of Karachi Karachi75270Pakistan Citrus Research Institute Sargodha40100Pakistan Department of Plant Production Faculty of AgronomyUniversidad de ConcepciónChillán3780000Chile

Viral diseases have been studied in-depth for reducing quality,yield,health and longevity of the fruit,to highlight the economic ***-sense single-stranded RNA viruses are more devastating among all viruses that infect fruit *** of the best examples is papaya ringspot virus(PRSV).It belongs to the genus Potyvirus and it is limited to cause diseases on the family Chenopodiaceae,Cucurbitaceae and *** virus has a serious threat to the production of papaya,which is famous for its high nutritional and pharmaceutical *** plant parts such as leaves,latex,seeds,fruits,bark,peel and roots may contain the biological compound that can be isolated and used in pharmaceutical industries as a disease *** disease symptoms consist of vein clearing and yellowing of young *** ring spot patterns with concentric rings and spots on fruit reduce its quality and *** virus has two major strains P and *** former cause disease in papaya and cucurbits while the later one in *** comprises 94.4%protein,including a 36 kDa coat protein which is a component responsible for a non-persistent transmission through aphids,and 5.5%nucleic *** protection,development of transgenic crops,exploring the resistant sources and induction of pathogen derived resistance have been recorded as effective management of *** with these practices reduced aphid population through insecticides and plant extracts have been found ecofriendly approaches to minimize the disease *** of transgenic crops is a big challenge for the success of disease resistant papaya *** aim of this review is to understand the genomic nature of PRSV,detection methods and the different advanced control meth*** review article will be helpful in developing the best management strategies for controlling PRSV.

关键词： Papaya obligate parasite +ssRNA PRSV aphid genomic characterization and functions

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Bangla language modeling algorithm for automatic recognition of hand-sign-spelled Bangla sign language

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Frontiers of Computer Science 2020年第3期14卷 45-64页

作者： Muhammad Aminur RAHAMAN Mahmood JASIM Md.haider ali Md.HASANUZZAMAN Department of Computer Science and Engineering University of DhakaDhaka-1000Bangladesh

Because of using traditional hand-sign segmentation and classification algorithm,many diversities of Bangla language including joint-letters,dependent vowels *** representing 51 Bangla written characters by using only 36 hand-signs,continuous hand-sign-spelled Bangla sign language(BdSL)recognition is *** paper presents a Bangla language modeling algorithm for automatic recognition of hand-sign-spelled Bangla sign language which consists of two *** phase is designed for hand-sign classification and the second phase is designed for Bangla language modeling algorithm(BLMA)for automatic recognition of hand-sign-spelled Bangla sign *** first phase,we have proposed two step classifiers for hand-sign classification using normalized outer boundary vector(NOBV)and window-grid vector(WGV)by calculating maximum inter correlation coefficient(ICC)between test feature vector and pre-trained feature *** first,the system classifies hand-signs using *** classification score does not satisfy specific threshold then another classifier based on WGV is *** system is trained using 5,200 images and tested using another(5,200×6)images of 52 hand-signs from 10 signers in 6 different challenging environments achieving mean accuracy of 95.83%for classification with the computational cost of 39.972 milliseconds per *** the Second Phase,we have proposed Bangla language modeling algorithm(BLMA)which discovers all"hidden characters"based on"recognized characters"from 52 hand-signs of BdSL to make any Bangla words,composite numerals and sentences in BdSL with no training,only based on the result of first *** the best of our knowledge,the proposed system is the first system in BdSL designed on automatic recognition of hand-sign-spelled BdSL for large *** system is tested for BLMA using hand-sign-spelled 500 words,100 composite numerals and 80 sentences in BdSL achieving mean accuracy of 93.50%,95.50%and 90.50%respectively.

关键词： Bangla sign language(BdSL) hand-sign classification Bangla language modeling rules(BLMR) Bangla language modeling algorithm(BLMA)

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Priming mesenchymal stem cells to develop “super stem cells”

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World Journal of Stem Cells 2024年第6期16卷 623-640页

作者： Khawaja Husnain haider Department of Basic Sciences Sulaiman AlRajhi UniversityAlQaseem 52736Saudi Arabia

The stem cell pre-treatment approaches at cellular and sub-cellular levels encompass physical manipulation of stem cells to growth factor treatment,genetic manipulation,and chemical and pharmacological treatment,each strategy having advantages and *** of these pre-treatment protocols are *** editorial is a continuum of Li et al’s published article and Wan et al’s editorial focusing on the significance of pre-treatment strategies to enhance their stemness,immunoregulatory,and immunosuppressive *** have elaborated on the intricacies of the combinative pre-treatment protocol using pro-inflammatory cytokines and *** a well-defined multi-pronged combinatorial strategy of mesenchymal stem cells(MSCs),pre-treatment based on the mechanistic understanding is expected to develop“Super MSCs”,which will create a transformative shift in MSC-based therapies in clinical settings,potentially revolutionizing the *** optimized,the standardized protocols may be used with slight modifications to pre-treat different stem cells to develop“super stem cells”with augmented stemness,functionality,and reparability for diverse clinical applications with better outcomes.

关键词： Cell survival Cell therapy Preconditioning Pre-treatment Stem cells Super stem cells

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