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Uncovering the immunological repertoire of the carpet shell clam Ruditapes decussatus through a transcriptomic-based approach

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Aquaculture and Fisheries 2019年第1期4卷 37-42页

作者： Frederico M.Batista Allison M.Churcher Manuel Manchado alexandra leitao Deborah M.Power Centro de Cieencias do Mar(CCMAR) Universidade do AlgarveCampus de Gambelas8005-139 FaroPortugal Instituto Portugues do Mar e da Atmosfera Estaçao Experimental de Moluscicultura de TaviraPortugal Department of Biosciences College of ScienceSwansea UniversitySwanseaSA28PPWalesUnited Kingdom IFAPA Centro El Toruno Junta de AndalucíaCamino Tiro Pichon sn11500 El Puerto de Santa MaríaCadizSpain Environmental Science Center(ESC) Qatar UniversityP.O.Box 2713 DohaQatar

The grooved carpet-shell clam Ruditapes decussatus is native to the Northern Atlantic and Mediterranean Sea and has a high commercial *** is one of the main native bivalve species cultured in *** main objective of the present study was to gain further insights into the immunological repertoire of *** through a transcriptomic *** mantle samples of eight *** individuals were sequenced using Illumina platform.A total of 67132 contigs with more than 800 bp were *** annotation of these contigs revealed 146 immune-related *** gene families in which the highest number of immune-related genes was observed were:C1q domain-containing proteins(63),tumor necrosis factors(15)and toll-like receptors(TLRs,10).A total of 5359 putative single nucleotide polymorphisms(SNPs)were identified in the 146 immune-related *** density of SNPs ranged between 0.04 and 7.92 SNPs/100 *** highest and the lowest SNP density were observed in genes of the C1q domain-containing protein *** to the importance of TLRs in innate immunity,we focused our attention on these membrane *** TLRs were identified based on protein domain *** analysis revealed that *** TLRs were diverse and only 3 showed orthology with TLRs of known immune functions in other bivalve ***,our analysis suggests that lineage restricted-expansions of TLRs occurred in all mollusc taxa analysed including in venerids.

关键词： Ruditapes decussatus Transcriptome Immune genes Toll-like receptors

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