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Water Stress Early Detection of Eggplant Plants by Hyperspectral Fluorescence Spectroscopy

Open Journal of Applied Sciences 2023年第3期13卷 343-354页

作者： Amara Kamate Penetjiligué Adama Soro Emma Georgina Zoro-Diama Kedro Sidiki Diomande adjo viviane adohi-krou Laboratoire des Sciences de la Matière de l’Environnement et de l’Energie Solaire (LASMES) Université Félix Houphouët-Boigny Abidjan Côte d’Ivoire Centre National de Recherche Agronomique (CNRA) Adiopodoumé Côte d’Ivoire

Water stress early detection is essential for precision farming to improve crop productivity and product quality. The methods usually used are destructive, long and expensive. In this work, we used hyperspectral chlorophyll fluorescence technology as a rapid, non-destructive approach to detect the water deficiency of eggplant plants using their spectral footprint. So, an experiment was made on 54 eggplant plants subjected to three water treatments: normal irrigation (T100), intermediate irrigation (T50) and no irrigation (T0). The fluorescence spectra were acquired in vivo and in situ using a USB4000 spectrometer from Ocean optics. For the classification of the plants subjected to three water treatments, we used three pretreatments of the raw hyperspectral data in order to suppress the non-informative variability present in these spectra and to obtain robust models. These are the Savitzky-Golay smoothing (SG), the standard normal variable (SNV) and the first derivative of Savitzky-Golay (SG-D1). The preprocessed data were then subjected to two partial least squares discriminant analyses (PLS-DA): Hard PLS-DA and Soft PLS-DA. These statistical approaches are suitable for large samples as it reduces the dimensionality of the data but improves the accuracy of the prediction. The SG-D1 combined with the Soft PLS-DA gave the best discrimination of plants with scores of sensitivity, specificity and total efficiency respectively of 97.33%, 94% and 95% for calibration, 6 days after hydric stress induction. For the plants used for the prediction, the scores are 86%, 91% and 90% respectively. This study shows that hyperspectral chlorophyll fluorescence spectroscopy is a fast and non-destructive technology allowing early detection of water stress in eggplant plants.

关键词： Chlorophyll Fluorescence Eggplant Water Stress Water Deficiency PLS-DA

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Detection of Rice Yellow Mottle at the Asymptomatic Stage by Hyperspectral Fluorescence and Reflectance Spectroscopies

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Optics and Photonics Journal 2023年第4期13卷 63-78页

作者： Amara Kamate Penetjiligué Adama Soro Emma Georgina Zoro-Diama Kedro Sidiki Diomandé adjo viviane adohi-krou Laboratoire des Sciences de la Matière de l’Environnement et de l’Energie Solaire (LASMES) Université Félix Houphouët-Boigny Abidjan Côte d’Ivoire Centre National de Recherche Agronomique (CNRA) Adiopodoumé Côte d’Ivoire

Rice yellow mottle is considered the most destructive disease threatening rice production in Africa. Early detection of this infection in rice is essential to limit its expansion and proliferation. However, there is no research devoted to the spectral detection of rice yellow mottle virus (RYMV) infection, especially in the asymptomatic or early stages. This work proposes the use of hyperspectral fluorescence and reflectance data at leaf level for the detection of this disease in asymptomatic stages. A greenhouse experiment was therefore conducted to collect hyperspectral fluorescence and reflectance data at different stages of infection. These data allowed to calculate nine vegetation indices: one from fluorescence spectra and eight from reflectance spectra. A t-test made it possible to identify, from the second day after infection, four relevant reflectance vegetation indices to discriminate healthy leaves from those infected: these are Photochemical Reflectance Index (PRI), Transformed Chlorophyll Absorption in Reflectance Index (TCARI), Structure Intensive Pigment Index (SIPI) and Simple Ratio Pigment Index (SRPI). The fluorescence index was less sensitive in detecting infection. The four significant vegetation indices for the detection of RYMV were then used to build and evaluate models for discriminating plants according to their health status by the supervised classification of support vector machine (SVM) at different stages of infection. The maximum overall accuracy is 92.5% six days after inoculation (6 DAI). The sixth day after inoculation would be the adequate day to detect RYMV. This plants discrimination was validated by the mean reflectance spectra and by the histograms showing the differences between the average reflectance vegetation indices values of the two types of plants. Our results demonstrate the feasibility of differentiating RYMV-infected samples. They suggest that support vector machine learning models could be developed to diagnose RYMV-i

关键词： Rice Yellow Mottle Virus Fluorescence Spectra Reflectance Spectra Vegetation Indices SVM Classification Savitzky Golay Filtering

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Water Stress Early Detection of Eggplant Plants by Hyperspectral Fluorescence Spectroscopy

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Open Journal of Applied Sciences（应用科学） 2023年第3期

作者： Amara Kamate Penetjiligué Adama Soro Emma Georgina Zoro-Diama Kedro Sidiki Diomande adjo viviane adohi-krou

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Detection of Rice Yellow Mottle at the Asymptomatic Stage by Hyperspectral Fluorescence and Reflectance Spectroscopies

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Optics and Photonics Journal（光学与光子学期刊） 2023年第4期

作者： Amara Kamate Penetjiligué Adama Soro Emma Georgina Zoro-Diama Kedro Sidiki Diomandé adjo viviane adohi-krou

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