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Recent advances in the data analysis method of functional magnetic resonance imaging and its applications in neuroimaging

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Progress in Natural Science:Materials International 2006年第8期16卷 785-795页

作者： TIAN Jie, YANG Lei and HU Jin (Institute of Automation, chinese academy of sciences, Beijing 100080, china {4. {5. of chinese academy of sciences, Beijing 100039, china) [a]chinese academy of sciences Institute of Automation Beijing China [b]graduate school of chinese academy of {4. Beijing China

Functional magnetic resonance imaging (fMRI) has opened a new area to explore the human brain. The fMRI can reveal the deep insights of spatial and temporal changes underlying a broad range of brain function, such as motor, vision, memory and emotion, all of which are helpful in the clinical investigation. In this paper, we introduce some recent-developed algorithms for fMRI signal detection such as model-driven method (general linear model, deconvolution model, non-linear model, etc. ) and data-driven method (principle component analysis, independent component analysis, self-organization mapping, clustered constrained non-negative matrix factorization, etc. ). We also propose several important applications of neuroimaging and point out their shortcomings and future perspectives.

关键词： fMR1 data analysis neuroimaging.

Identification of novel SINEs from Cyprinidae and their evolutionary significance

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Progress in Natural Science:Materials International 2007年第3期17卷 270-279页

作者： HAN Yawei, HE Slumping and CHEN Yiyu ( Institute of Hydrobiology, chinese academy of sciences, Wuhan 4.0072, china. {4. {5., chinese academy of sciences, Beijing 100039, china) [a]Institute of Hydrobiology Chinese Academy of Sciences Wuhan China [b]graduate school Chinese Academy of Sciences Beijing China

Short interspersed nuclear elements (SINEs) are widespread among eukaryotic genomes. They are repetitive DNA sequences that have been amplified by retrotransposition. In this study, a class of SINEs were isolated from the Opsariichthys bidens genome, and named Opsar. Sequence analysis confirmed that Opsar is a new class of typical SINEs derived from tRNA molecules. With the tRNA-derived region of Opsar and through BLASTN search, we further identified Zb-SINEs from the zebrafish genome, which includes two groups: Zb-SINE-A and Zb-SINE-B. The Zb-SINE-A. group comprises subfamilies of -Al--A5. and the Zb-SINE-B group is a dimer of the tRNA -derived region and shares a similar dimeric composition to Alu. Zb-SINEs are composed of three distinct regions: a 5. end tRNA-derived region, a tRNA-unrelated region and a 3’ end AT-rich region. The flanking regions are AT rich. The average length of Zb-SINEs elements is about 34. bp. Zb-SINEs account for as much as 0.1 % of the whole zebrafish genome. About 70% of the Zb-SINEs are on chromosomes 11, 18, and 19. These Zb-SINEs were characterized by PCR and dot hybridization. The distribution pattern of Zb-SINEs in genome strongly supports the master genes model. The tRNA-derived regions of Opsar and Zb-SINEs were compared with the tRNAAla gene, and they showed 76% similarity, indicating that Opsar and Zb-SINEs originated from an inactive tRNA sequence or a tRNA -like sequence. In view of the evolutionary status of zebrafish in the Cyprinidae, we deduced that Zb-SINEs were a very old class of interspersed sequences.

关键词： short interspersed nuclear elements (SINEs) master gene model Opsar Zb-SINEs and Cyprinidae.

An improved method for evaluating the seasonal variability of total suspended sediment flux field in the Yellow and East china Seas

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International Journal of Sediment Research 2011年第1期26卷 1-14页

The suspended sediment flux field in the Yellow and East china Seas(YECS) displays its seasonal variability.A new method is introduced in this paper to obtain the flux field via retrieval of ocean color remote sensing data,statistical analysis of historical suspended sediment concentration data,and numerical simulation of three-dimensional(3D) flow *** components of the sediment flux field include(i) surface suspended sediment concentration inverted from ocean color remote sensing data;(ii) vertical distribution of suspended sediment concentration obtained by statistical analysis of historical observation data;and(iii) 3D flow field modeled by a numerical *** the improved method,the 3D suspended sediment flux field in the YECS has been *** comparison with the suspended sediment flux field solely based on the numerical simulation of a suspended sediment transport model,the suspended sediment flux field obtained by the improved method is found to be more *** 3D suspended sediment flux field from ocean colour remote sensing and in situ observation are more closer to the ***,by quantitatively analyzing the newly obtained suspended sediment flux field,the quantity of sediment erosion and deposition within the different regions can be *** sediment exchange between the Yellow Sea and the East china Sea can be *** mechanism of suspended sediment transport in the YECS can be better *** particular,it is suggested that the long-term transport of suspended sediment is controlled mainly by the circulation pattern,especially the current in winter.

关键词： Suspended sediment flux field Seasonal variability Yellow and East china Seas Regression equation Numerical simulation

Land cover changes based on plant successions: Deforestation, rehabilitation and degeneration of forest in the upper Dadu River watershed

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Science china Earth sciences 2005年第12期48卷 2214-2230页

作者： YAN Jianzhong1,2,3, ZHANG Yili1, BAI Wanqi1, LIU Yanhua4. BAO Weikai5. LIU Linshan1, 2 & ZHENG Du1 1. Institute of Geographic sciences and Natural Resources Research, chinese academy of sciences, Beijing 100101, china 2. {5. school of the chinese academy of sciences, Beijing 100039, china 3. College of Resources and Environment, Southwest Agricultural University, Chongqing 4.0716, china 4. The Ministry of Science and Technology, P. C. china, Beijing 100862, china 5. Chengdu Institute of Biology, chinese academy of sciences, Chengdu 61004., china 1. Institute of Geographic sciences and Natural Resources Research Chinese Academy of Sciences 100101 Beijing China 2. graduate school of the chinese academy of {4. 100039 Beijing China 3. College of Resources and Environment Southwest Agricultural University 400716 Chongqing China 4. The Ministry of Science and Technology P. C. China 100862 Beijing China 5. Chengdu Institute of Biology Chinese Academy of Sciences 610041 Chengdu China

To link regional land use/cover changes with environmental effects, land cover changes are required to reflect vegetation successions, whereas the land cover classification systems commonly used nowadays cannot serve this purpose. In this paper, a new land cover classification system is established in which land covers are classified by the vegetation succes-sions, taking Zamtang County, Barkam County and Jinchuan County in the upper Dadu River watershed as a study area. Using multi-temporal remote sensing images, the land cover data of 1967, 1986 and 2000 are obtained by means of integration of unsupervised classification and visual interpretation methods. The database facilitates the study of land use/cover changes, en-vironmental effects and ecological construction. Land cover changes reflect the main ecological processes in the upper Dadu River watershed. The landscape composed mainly of grasslands, wildwoods and alpine scrubs in 1967 was changed to that of grasslands, secondary forests, al-pine scrubs, fragmentary wildwoods, artificial forests, secondary scrubs in 2000, meanwhile, the landscape got more fragmentized. The total area of the forests decreased by 9.4.%. Study results have shown the process of restoration of logged areas in forest centers. From 1967 to 2000, only 6.86 percents of logged areas were converted to shrubs, meadows or crop-lands, and the rest were converted into artificial forests or secondary forests. So the ecological shelter functions will be restored, stage by stage. Firewood collection, charcoal production and overgrazing are the three major triggers for the extensive degradation of alpine oak forests, Sa-bina tibetica forests and meadows. The arid valley grasslands expanded too. The degradation of vegetation in the southern slopes impairs ecological shelter functions and affects livelihood of local residents, so it is essential to find effective measures for ecological restoration and recon-struction. Field investigations have found

关键词： land use/cover classification, upper Dadu River watershed, vegetation successions, GIS, RS.

Isolation and Characterization of Photosystem Ⅱ of Porphyra yezoensis Ueda

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Acta Biochimica et Biophysica Sinica 2004年第11期36卷 780-785页

作者： Zheng-Quan GAO, Guang-Ce WANG, and Cheng-Kui TSENGKey Laboratory of Experimental Marine Biology, Institute of Oceanology, the chinese academy of sciences, Qingdao 266071, china {4. {5., the chinese academy of sciences, Beijing 100039, china Key Laboratory of Experimental Marine Biology Institute of Oceanology the Chinese Academy of SciencesQingdao 266071 China graduate school the Chinese Academy of SciencesBeijing 100039 China

The thylakoid membranes were isolated and purified from gametophyte of Porphyra yezoensis Ueda (P. yezoensis) by sucrose density gradient ultracentrifugation. After P. yezoensis gametophyte thylakoid membranes were so... 详细信息

关键词： red algae Porphyra yezoensis Ueda photosystem Ⅱ polypeptide composition extrinsic protein

Reconstruction of temperature series in china for the last 5.00 years

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Progress in Natural Science:Materials International 2006年第8期16卷 838-845页

作者： GE Quansheng, WANG Shunbing and ZHENG Jingyun (Institute of Geographical sciences and Natural Resources Research, chinese academy of sciences, Beijing 100101,{4. {5. school of the chinese academy of sciences, Beijing 100039,{4.) [a]chinese academy of sciences Institute of Geographical Sciences and Natural Resources Research Beijing China [b]graduate school of the chinese academy of {4. Beijing China

A temperature series with a 100 year resolution for the last 5.00 years in china has been reconstructed by using 31 longterm temperature proxy series selected from recent publications in the last 20 years. The proxy records include pollens, stalagmites, lake-sediments, peat, ice cores and historical documents. The result reveals that in the millennial scale temperature variation it was warm in 305.-25. BC and it was cold in 25. BC-195. AD. In the above two periods there were many stages of sub-scale temperature fluctuations. The result also shows an obvious temperature discrepancy on the century to multi-century scale between the Eastern Monsoon Region, the Qinghai-Tibet Region and the Northwestern Region in 285. BC, 235. BC, 135. BC, 95.-35. BC, 5.-25. AD, and 5.0 AD. A comparison between the reconstructed series of this paper and some North Hemisphere temperature series indicates that in the longterm scale change, the temperature change in china is in phrase with that of the Northern Hemisphere during the last 5.00 years, while on the century to multi-century scale there are differences at the beginning and end times, which may imply that temperature change does not occur simultaneously in different regions.

关键词： temperature series the last 5.00 years china.

Rate of strong consistency of quasi maximum likelihood estimate in generalized linear models

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Science china Mathematics 2004年第6期47卷 882-893页

作者： YUE Li & CHEN Xiru school of Mathematics and Statistics, Wuhan University, Wuhan 4.0072, china graduate school, {4. {5. of sciences, Beijing 100039, china 1. school of Mathematics and Statistics Wuhan University 430072 Wuhan China 2. graduate school Chinese Academy of Sciences 100039 Beijing China

Under the assumption that in the generalized linear model (GLM) the expectation of the response variable has a correct specification and some other smooth conditions, it is shown that with probability one the quasi-likelihood equation for the GLM has a solution when the sample size n is sufficiently large. The rate of this solution tending to the true value is determined. In an important special case, this rate is the same as specified in the LIL for iid partial sums and thus cannot be improved anymore.

关键词： quasi-likelihood function generalized linear models strong consistency

Genetic fingerprinting of plankton community provides new insights into aquatic ecology

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Progress in Natural Science:Materials International 2006年第9期16卷 893-898页

作者： YAN Qingyun, YU Yuhe and FENG Weisong ( Institute of Hydrobiology, chinese academy of sciences, Wuhan 4.0072, china {4. {5. of the chinese academy of Sci-ences, Beijing 100039, china) [a]Institute of Hydrobiology Chinese Academy of Sciences Wuhan China [b]graduate school of the chinese academy of {4. Bejing China

Over the past two decades, molecular techniques have been widely used in ecological study and molecular ecology has been one of the most important branches of ecology. Meanwhile, genetic fingerprinting analyses have significantly enhanced our knowledge of the diversity and evolutionary relations of the planktonic organisms. Compared with conventional approaches in ecological study (e.g. morphological classification), genetic fingerprinting techniques are simpler and much more effective. This review provides an overview of the principles, advantages and limitations of the commonly used DNA fingerprinting techniques in plankton research. The aim of this overview is to assess where we have been, where we are now and what the future holds for solving aquatic ecological problems with molecular-level information.

关键词： genetic fingerprinting plankton community aquatic ecology genetic diversity.

Experimental study on phosphorus release from sediments of shallow lake in wave flume

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Science china Earth sciences 2006年第z1期49卷 92-101页

作者： SUN Xiaojing,ZHU Guangwei, LUO Liancong & QIN Boqiang Nanjing Institute of Geography & Limnology, chinese academy of sciences, Nanjing 210008, china {4. {5. of chinese academy of sciences, Beijing 100039, china 1. Nanjing Institute of Geography & Limnology Chinese Academy of Sciences Nanjing 210008 China2. Graduate School of Chinese Academy of Sciences Beijing 100039 China

Influence of wave on sediment resuspension and nutrients release from sediments, collected from Lake Taihu and Lake Chaohu, was studied in flume experiments. Under strong-wave conditions, concentrations of suspended solids (SS), total phosphorus (TP) and dissolved total phosphorus (DTP) in overlying water were increased significantly following the sediments re-suspension. During the experiments on sediments of Lake Taihu and Lake Chaohu, TP concentrations increased 6 times and 3 times, and DTP concentration increased 100% and 70% more than it in presuspension, respectively. Concentration of soluble reactive phosphorus (SRP) of experiment on sediment of Lake Taihu increased 25.. During the massive sediment suspension, the dissolved phosphorus in pore water and much of the phosphorus adsorbed by the sediment particles were released into overlying water. The phenomena in this wave flume experiment are quite similar to the situation observed in situ of Lake Taihu. The critical wave stresses of sediment re-suspension are nearly equal. The change of concentrations of SS, TP, and SRP was the same as that in situ *** study showed that concentrations of TP and SRP in lake water could be increased significantly by wave disturbance. Phosphorus release was significantly enhanced by wave disturbance at the beginning of massive sediment re-suspension, but decreased later.

关键词： shallow lakes, wave disturbance, internal release, phosphorus, wave flume experiment.