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Recent advances in the data analysis method of functional magnetic resonance imaging and its applications in neuroimaging

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Progress in Natural Science:Materials International 2006年第8期16卷 785-795页

作者： TIAN Jie, YANG Lei and HU Jin (Institute of Automation, chinese academy of sciences, beijing 100080, china graduate School of chinese academy of sciences, beijing 100039, china) Institute of Automation Chinese Academy of Sciences Beijing 100080 China graduate School of chinese academy of sciences Beijing 100039 China

Functional magnetic resonance imaging (fMRI) has opened a new area to explore the human brain. The fMRI can reveal the deep insights of spatial and temporal changes underlying a broad range of brain function, such as motor, vision, memory and emotion, all of which are helpful in the clinical investigation. In this paper, we introduce some recent-developed algorithms for fMRI signal detection such as model-driven method (general linear model, deconvolution model, non-linear model, etc. ) and data-driven method (principle component analysis, independent component analysis, self-organization mapping, clustered constrained non-negative matrix factorization, etc. ). We also propose several important applications of neuroimaging and point out their shortcomings and future perspectives.

关键词： fMR1 data analysis neuroimaging.

Twistor bundle theory and its application

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Science china Mathematics 2004年第4期47卷 605-616页

作者： PENG Chia-Kuei & TANG ZizhouDepartment of Mathematics, graduate School of chinese academy of sciences, beijing 100039, china Department of Mathematical sciences, Tsinghua university, beijing 100084, china Department of Mathematics Graduate School of Chinese Academy of Sciences Beijing China Department of Mathematical sciences Tsinghua University Beijing China

Over an oriented even dimensional Riemannian manifold(M 2m ,ds2 ), in terms of the Levi-Civita connection form Ω and the canonical form Θ on the bundle of positive orthonormal frames, we give a detailed description of the twistor bundle Гm = SO(2m)/U(m)? J +(@#@ M,ds2 ) →M. The integrability on an almost complex structureJ compatible with the metric and the orientation, is shown to be equivalent to the fact that the corresponding cross section of the twistor bundle is holomorphic with respect toJ and the canonical almost complex structureJ 1 onJ +(M,ds2 ), by using moving frame theory. Moreover, for various metrics and a fixed orientation onM, a canonical bundle isomorphism is established. As a consequence, we generalize a celebrated theorem of LeBrun.

关键词： almost complex structure, integrability, twistor bundle.

Evidence from isotopic geochemistry as an indicator of eutrophication of Meiliang Bay in Lake Taihu, china

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Science china Earth sciences 2006年第Z1期49卷 62-71页

作者： LIN Lin, WU Jinglu & WANG Sumin Nanjing Institute of Geography & Limnology, chinese academy of sciences, Nanjing 210008, china graduate university of the chinese academy of sciences, beijing 100039, china Nanjing Institute of Geography & Limnology Chinese Academy of Sciences Nanjing China graduate university of the chinese academy of sciences Beijing China

In this paper, Lake Taihu, a large shallow freshwater lake in china, is chosen as an example of reconstruction of eutrophication through the comparison between stable isotopes from dissolved nutrients and plants and water column nutrient parameters and integration of multiple proxies in a sediment core from Meiliang Bay including TN, TP, TOC, C/N, δ15N, δ13C, etc. Differences in aquatic plant species and trophic status between East Taihu Bay and Meiliang Bay are indicated by their variations in δ13C and δ15N of aquatic plants and δ15N of NH4+. A significant influence ofexternal nutrient inputs on Meiliang Bay is reflected in temporal changes in δ 15N of NH4+ and hydro-environmental parameters. The synchronous change between δ13C and δ15N values of sedimented organic matter (OM) has been attributed to elevated primary production at the beginning of eutrophication between 1950 and 1990, then recent inverse correlation between them has been caused by the uptake of 15N-enriched inorganic nitrogen by phytoplankton grown under eutrophication and subsequent OM decomposition and denitrification in surface sediments, indicating that the lake has suffered from progressive eutrophication since 1990. Based on the use of a combination of stable isotopes and elemental geochemistry, the eutrophication of Meiliang Bay in Lake Taihu could be better traced. These transitions of the lake eutrophication respectively occurring in the 1950s and 1990s have been suggested as a reflection of growing impacts of human activities, which is coincident with the instrumental data.

关键词： stable carbon isotope of OM, stable nitrogen isotope, eutrophication, Lake Taihu.

An improved method for evaluating the seasonal variability of total suspended sediment flux field in the Yellow and East china Seas

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International Journal of Sediment Research 2011年第1期26卷 1-14页

作者： PANG Chongguang~1,YU Wei~2,YANG Yang~3,and HAN Danxiu~4 Institute of Oceanology,chinese academy of sciences,Qingdao 266071,china, 2 Institute of Oceanology,chinese academy of sciences,Qingdao 266071,china,graduate School of chinese academy of sciences,beijing 100039,china 3 Institute of Oceanology,chinese academy of sciences,Qingdao 266071,china,graduate School of chinese academy of sciences,beijing 100039,china 4 china university of Petroleum,beijing 102249,china Doctor Researcher Institute of Oceanology Chinese Academy of Sciences Qingdao 266071 China Institute of Oceanology Chinese Academy of Sciences Qingdao 266071 China Graduate School of Chinese Academy of Sciences Beijing 100039 China china university of Petroleum Beijing 102249 China

The suspended sediment flux field in the Yellow and East china Seas(YECS) displays its seasonal variability.A new method is introduced in this paper to obtain the flux field via retrieval of ocean color remote sensing data,statistical analysis of historical suspended sediment concentration data,and numerical simulation of three-dimensional(3D) flow *** components of the sediment flux field include(i) surface suspended sediment concentration inverted from ocean color remote sensing data;(ii) vertical distribution of suspended sediment concentration obtained by statistical analysis of historical observation data;and(iii) 3D flow field modeled by a numerical *** the improved method,the 3D suspended sediment flux field in the YECS has been *** comparison with the suspended sediment flux field solely based on the numerical simulation of a suspended sediment transport model,the suspended sediment flux field obtained by the improved method is found to be more *** 3D suspended sediment flux field from ocean colour remote sensing and in situ observation are more closer to the ***,by quantitatively analyzing the newly obtained suspended sediment flux field,the quantity of sediment erosion and deposition within the different regions can be *** sediment exchange between the Yellow Sea and the East china Sea can be *** mechanism of suspended sediment transport in the YECS can be better *** particular,it is suggested that the long-term transport of suspended sediment is controlled mainly by the circulation pattern,especially the current in winter.

关键词： Suspended sediment flux field Seasonal variability Yellow and East china Seas Regression equation Numerical simulation

Models and methods for precise determination of ionospheric delay using GPS

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Progress in Natural Science:Materials International 2007年第2期17卷 187-196页

作者： YUAN Yunbin, HUO Xingliang and OU Jikun ( Institute of Geodesy and Geophysics, chinese academy of sciences, Wuhan 430077, china graduate university of chinese A-cademy of sciences, beijing 100039, china) Institute of Geodesy and Geophysics Chinese Academy of Sciences Wuhan 430077 China graduate university Chinese Academy of Sciences Beijing 100039 China

The basic principles and methods for precisely determining ionospheric delays in GPS observations are introduced and discussed. Various methods and models for fitting ionospheric delays based on GPS are compared and a... 详细信息

关键词： GPS ionospheric delay atmosphere modeling precise GPS positioning.

Reconstruction of temperature series in china for the last 5000 years

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Progress in Natural Science:Materials International 2006年第8期16卷 838-845页

作者： GE Quansheng, WANG Shunbing and ZHENG Jingyun (Institute of Geographical sciences and Natural Resources Research, chinese academy of sciences, beijing 100101, china graduate School of the chinese academy of sciences, beijing 100039, china) Institute of Geographical sciences and Natural Resources Research Chinese Academy of Sciences Beijing 100101 China graduate School of the chinese academy of sciences Beijing 100039 China

A temperature series with a 100 year resolution for the last 5000 years in china has been reconstructed by using 31 longterm temperature proxy series selected from recent publications in the last 20 years. The proxy records include pollens, stalagmites, lake-sediments, peat, ice cores and historical documents. The result reveals that in the millennial scale temperature variation it was warm in 3050-250 BC and it was cold in 250 BC-1950 AD. In the above two periods there were many stages of sub-scale temperature fluctuations. The result also shows an obvious temperature discrepancy on the century to multi-century scale between the Eastern Monsoon Region, the Qinghai-Tibet Region and the Northwestern Region in 2850 BC, 2350 BC, 1350 BC, 950-350 BC, 50-250 AD, and 550 AD. A comparison between the reconstructed series of this paper and some North Hemisphere temperature series indicates that in the longterm scale change, the temperature change in china is in phrase with that of the Northern Hemisphere during the last 5000 years, while on the century to multi-century scale there are differences at the beginning and end times, which may imply that temperature change does not occur simultaneously in different regions.

关键词： temperature series the last 5000 years china.

Applications of URANS on predicting unsteady turbulent separated flows

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Acta Mechanica Sinica 2009年第3期25卷 319-324页

作者： Jinglei Xu Huiyang Ma Department of Physics, graduate university of the chinese academy of sciences, 100049 beijing, china Department of Physics Graduate University of the Chinese Academy of Sciences Beijing China

Accurate prediction of unsteady separated turbulent flows remains one of the toughest tasks and a practi cal challenge for turbulence modeling. In this paper, a 2D flow past a circular cylinder at Reynolds number 3,900 is numerically investigated by using the technique of unsteady RANS （URANS）. Some typical linear and nonlinear eddy viscosity turbulence models （LEVM and NLEVM） and a quadratic explicit algebraic stress model （EASM） are evaluated. Numerical results have shown that a high-performance cubic NLEVM, such as CLS, are superior to the others in simulating turbulent separated flows with unsteady vortex shedding.

关键词： URANS Nonlinear eddy viscosity turbulencemodel ,Separated flows Circular cylinder

Identification of novel SINEs from Cyprinidae and their evolutionary significance

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Progress in Natural Science:Materials International 2007年第3期17卷 270-279页

作者： HAN Yawei, HE Slumping and CHEN Yiyu ( Institute of Hydrobiology, chinese academy of sciences, Wuhan 430072, china. graduate School, chinese academy of sciences, beijing 100039, china) Institute of Hydrobiology Chinese Academy of Sciences Wuhan 430072 China graduate School Chinese Academy of Sciences Beijing 100039 China

Short interspersed nuclear elements (SINEs) are widespread among eukaryotic genomes. They are repetitive DNA sequences that have been amplified by retrotransposition. In this study, a class of SINEs were isolated from the Opsariichthys bidens genome, and named Opsar. Sequence analysis confirmed that Opsar is a new class of typical SINEs derived from tRNA molecules. With the tRNA-derived region of Opsar and through BLASTN search, we further identified Zb-SINEs from the zebrafish genome, which includes two groups: Zb-SINE-A and Zb-SINE-B. The Zb-SINE-A. group comprises subfamilies of -Al--A5, and the Zb-SINE-B group is a dimer of the tRNA -derived region and shares a similar dimeric composition to Alu. Zb-SINEs are composed of three distinct regions: a 5’ end tRNA-derived region, a tRNA-unrelated region and a 3’ end AT-rich region. The flanking regions are AT rich. The average length of Zb-SINEs elements is about 340 bp. Zb-SINEs account for as much as 0.1 % of the whole zebrafish genome. About 70% of the Zb-SINEs are on chromosomes 11, 18, and 19. These Zb-SINEs were characterized by PCR and dot hybridization. The distribution pattern of Zb-SINEs in genome strongly supports the master genes model. The tRNA-derived regions of Opsar and Zb-SINEs were compared with the tRNAAla gene, and they showed 76% similarity, indicating that Opsar and Zb-SINEs originated from an inactive tRNA sequence or a tRNA -like sequence. In view of the evolutionary status of zebrafish in the Cyprinidae, we deduced that Zb-SINEs were a very old class of interspersed sequences.

关键词： short interspersed nuclear elements (SINEs) master gene model Opsar Zb-SINEs and Cyprinidae.

Rate of strong consistency of quasi maximum likelihood estimate in generalized linear models

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Science china Mathematics 2004年第6期47卷 882-893页

作者： YUE Li & CHEN Xiru School of Mathematics and Statistics, Wuhan university, Wuhan 430072, china graduate School, chinese academy of sciences, beijing 100039, china School of Mathematics and Statistics Wuhan University Wuhan China graduate School Chinese Academy of Sciences Beijing China

Under the assumption that in the generalized linear model (GLM) the expectation of the response variable has a correct specification and some other smooth conditions, it is shown that with probability one the quasi-likelihood equation for the GLM has a solution when the sample size n is sufficiently large. The rate of this solution tending to the true value is determined. In an important special case, this rate is the same as specified in the LIL for iid partial sums and thus cannot be improved anymore.

关键词： quasi-likelihood function generalized linear models strong consistency