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Identification and Characterization of glnA Promoter and its Corresponding Trans-regulatory Protein GlnR in the Rifamycin SV Producing Actinomycete,Amycolatopsis mediterranei U3.

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Acta Biochimica et Biophysica Sinica 2006年第12期38卷 831-843页

作者： Hao YU~(1&) Wen-Tao PENG~1 Yang LIU~1 Ting WU~2 Yu-Feng YAO~1 Ming-Xue CUI~1 Wei-Hong JIANG~1 Guo-Ping ZHAO~(1,3.4*) 1 laboratory of Molecular microbiology,Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological sciences,Chinese Academy of sciences,Shanghai 20003.,china 2 department of Medicinal Chemistry,school of Pharmacy,fudan university,Shanghai 20003.,china 3.state key laboratory of genetic engineering & department of microbiology,school of life science,fudan university,Shanghai 20043.,china 4 laboratory of Disease and Health Genomics,Chinese National Human Genome Center at Shanghai,Shanghai 201203.china laboratory of Molecular microbiology Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences Shanghai 200032 China department of Medicinal Chemistry School of Pharmacy Fudan University Shanghai 200032 China state key laboratory of {3. engineering & department of microbiology School of Life Science Fudan University Shanghai 200433 China laboratory of Disease and Health Genomics Chinese National Human Genome Center at Shanghai Shanghai 201203 China

The genetic requirements for the transcription of glnA,encoding the major glutaminesynthetase in a rifamycin SV-producing Amycolatopsis mediterranei strain,U3.,were *** experiments showed that the promoter of U3. glnA （pglnA） was likely to have two transcriptioninitiation sites:P1and P2,located 157 and 45 nucleotides （nt） upstream of the translational start codon,*** mobility shift and DNase I footprinting analyses revealed a 3. bp cis-element locatedat 45 to 75 nt downstream of P1,or 3. to 68 nt upstream of *** sequence of the cis-element displayedhigh similarity to the corresponding regions of pglnA from Streptomyces coelicolor and *** as a reporter gene,the expression levels of U3. pglnA and its deletion derivatives under differentnitrogen-source conditions were analyzed by detecting the catechol dioxygenase activities in ***54,*** J508 and *** FS10 （glnR mutant）.These in vivo studies showed that theactivation of U3. pglnA in *** required GlnR,and its binding to the U3. pglnA was furtherconfirmed by the gel mobility shift *** and heterologous expression of the U3. glnR allowed usto detect the in vitro interaction between the U3. GlnR and the corresponding pglnA *** shown by in vivo glnR inactivation and complementation indicated that GlnR is essential for theactive transcription of glnA in U3..

关键词： glnA promoter cis-element glnR Amycolatopsis mediterranei

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Bacterial Type Ⅰ Glutamine Synthetase of the Rifamycin SV Producing Actinomycete,Amycolatopsis mediterranei U3.,is the Only Enzyme Responsible for Glutamine Synthesis under Physiological Conditions

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Acta Biochimica et Biophysica Sinica 2006年第12期 821-830页

作者： Wen-Tao PENG~(1&) Jin WANG~1 Ting WU~2 Jian-Qiang HUANG~1 Jui-Shen CHIAO~1 Guo-Ping ZHAO~(1,3.4) 1 laboratory of Molecular microbiology,Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological sciences,Chinese Academy of sciences,Shanghai 20003.,china 2 department of Medicinal Chemistry,school of Pharmacy,fudan university,Shanghai 20003.,china 3.state key laboratory of genetic {13./department of microbiology,school of life science,fudan university,Shanghai 20043.,china 4 laboratory of Health and Disease Genomics,Chinese National Haman Genome Center at Shanghai,Shanghai 201203.china

The structural gene for glutamine synthetase,glnA,from Amycolatopsis mediterranei U3. wascloned via screening a genomic library using the analog gene from Streptomyces *** clone wasfunctionally verified by complementing for glutamine requirement of an Escherichia coli glnA null mutantunder the control of a lac *** analysis showed an open reading frame encoding a protein of466 amino acid *** deduced amino acid sequence bears significant homologies to other bacterialtype Ⅰ glutamine synthetases,specifically,71% and 72% identical to the enzymes of *** and Myco-bacterium tuberculosis,*** of this glnA gene in *** U3. led to glutamineauxotrophy with no detectable glutamine synthetase activity in *** contrast,the cloned glnA+gene cancomplement for both phenotypes in *** thus suggested that in *** U3.,the glnA geneencoding glutamine synthetase is uniquely responsible for in vivo glutamine synthesis under our laboratorydefined physiological conditions.

关键词： glnA glutamine synthetase Amycolatopsis mediterranei rifamycin SV

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Characterization of a novel developmentally retarded mutant (drm1) associated with the autonomous flowering pathway in Arabidopsis

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Cell Research 2005年第2期15卷 133-140页

作者： Yong ZHU1,2,*, Hui Fang ZHAO1,3.*, Guo Dong REN1, Xiao Fei YU1, Shu Qing CAO1, Ben Ke KUAI1,4,**1department of Biochemistry, Ministry of Education key laboratory for Biodiversity {3. and Ecological engineering, school of life sciences, fudan university, 220 Handan Road, Shanghai 20043., china 2school of Horticulture and Gardening, Southwest Forestry College, Kun Ming 650224, china 3.0} of biology, school of {13. and Environment {3., Shanghai Normal university, Shanghai 20023., china4fudan Centre for genetic Diversity and designed Agriculture, fudan university, 220 Handan Road, Shanghai 20043., china department of Biochemistry Ministry of Education Key laboratory for Biodiversity Science and Ecological Engineering School of Life Sciences Fudan University 220 Handan Road Shanghai 200433 China.

A developmentally retarded mutant (drm1) was identified from ethyl methanesulfonate (EMS)-mutagenized M2 seedsin Columbia (Col-0) genetic background. The drm1 flowers 109 d after sowing, with a whole life cycle of about 160 *** also shows a pleiotropic phenotype, e.g., slow germination and lower germination rate, lower growth rate, curlingleaves and abnormal floral organs. The drm1 mutation was a single recessive nuclear mutation, which was mapped tothe bottom of chromosome 5 and located within a region of 20-3. kb around MXK3.1. There have been no mutantswith similar phenotypes reported in the literature, suggesting that DRM1 is a novel flowering promoting locus. Thefindings that the drm1 flowered lately under all photoperiod conditions and its late flowering phenotype was significantlyrestored by vernalization treatment suggest that the drm1 is a typical late flowering mutant and most likely associatedwith the autonomous flowering pathway. The conclusion was further confirmed by the revelation that the transcriptlevel of FLC was constantly upregulated in the drm1 at all the developmental phases examined, except for a very earlystage. Moreover, the transcript levels of two other important repressors, EMF and TFL1, were also upregulated in thedrm1, implying that the two repressors, along with FLC, seems to act in parallel pathways in the drm1 to regulateflowering as well as other aspects of floral development in a negatively additive way. This helps to explain why the drm1exhibits a much more severe late-flowering phenotype than most late-flowering mutants reported. It also implies that theDRM1 might act upstream of these repressors.

关键词： drm1 late-flowering autonomous flowering pathway Arabidopsis thaliana.

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Effects of Citral on Aspergillus flavus Spores by Quasi-elastic Light Scattering and Multiplex Microanalysis Techniques

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Acta Biochimica et Biophysica Sinica 2004年第4期36卷 277-283页

作者： Man LUO1,2, Li-Ke JIANG2, Yao-Xiong HUANG3. Ming XIAO4, Bo LI4, and Guo-Lin ZOU1* 1College of life sciences, Wuhan university, Wuhan 43.072, {3. 2College of life sciences, Anhui Agricultural university, Hefei 23.03., {3. 3.Institute of Biomedical engineering, Ji’nan university, Guangzhou 51063., {3. 4Ministry of Education key laboratory for Biodiversity science and Ecological engineering, the Institute of Biodiversity science, fudan university, Shanghai 20043., {3. College of life sciences Wuhan UniversityWuhan 430072 China College of life sciences Anhui Agricultural UniversityHefei 230036 China Institute of Biomedical engineering Ji'nan UniversityGuangzhou 510632 China Ministry of Education key laboratory for Biodiversity science and Ecological {3. the Institute of Biodiversity Science Fudan UniversityShanghai 200433 China

Citral refined from Litsea cubeba oil has been found to have a strong influence on fungi, especially Aspergillus flavus. Multiplex microanalysis and quasi-elastic light scattering techniques were applied to study the effects of citral on Aspergillus flavus spores from the levels of membrane, organelle and intracellular macromolecule. It was found that citral injured the wall and the membrane of A. flavus spore, resulting in decrease of its elasticity. After entering the cell, citral not only influenced the genetic expression of mitochondrion reduplication and its morphology, but also changed the aggregation of protein-like macromolecules. As a result, cells, organelles and macromolecules lost their normal structures and functions, eventually leading to the loss of germination ability of A. flavus spores. Since Litsea cubeba oil as food additive and antifungal agent is safe and less poisonous, it is important to elucidate the inhibitory mechanisms of Litsea cubeba oil on the germination ability of A. flavus spore.

关键词： citral Aspergillus flavus spore multiplex microanalysis techniques quasi-elastic light scattering technique

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Novel rAAV production system with low contamina-tion of helper virus

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Chinese science Bulletin 2003年第5期48卷 472-475页

作者： CHEN Li, CHEN Haoming, LI Ge, LU Daru & XUE Jinglun state key laboratory of {3. engineering, Institute of {3.s,school of life sciences, fudan university, Shanghai 20043., china Correspondence should be addressed to Xue Jinglun (e-mail: jlxue@ ***) state key laboratory of {3. engineering Institute of Genetics School of Life Sciences Fudan University

The Cre-loxP system was introduced in theproduction of recombinant AAV (rAAV). Defective adenovi-rus AdLC was used as the helper virus. While doing themass production of recombinant AAV carrying EGFP orhuman clotting factor Ⅸ (hFⅨ) gene, the generation ofhelper virus was significantly limited, it increased the sim-plicity of rAAV purification. The results from in vivo study demonstrated the superiority of this method. This systemprovides a novel approach for the application of rAAV sys-tem in gene therapy.

关键词：基因治疗重组腺病毒辅助病毒基因重组

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Genomic research for important pathogenic bacteria in china

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science china(life sciences) 2009年第1期52卷 50-63页

作者： YANG RuiFu1,GUO XiaoKui2,YANG Jian3.JIANG YongQiang1,PANG Bo4,CHEN Chen5,YAO YuFeng2,QIN JinHong2 & LI QingTian2 1 laboratory of Analytical microbiology,state {3. laboratory of Pathogen and Biosecurity,Beijing Institute of microbiology and Epidemiology,Beijing 100071,china 2 department of Medical microbiology and Parasitology,Institutes of Medical sciences,Shanghai Jiao Tong university school of Medicine,Shanghai 200025,china {13. {3. laboratory for Molecular Virology and genetic engineering,Institute of Pathogen Biology,Chinese Academy of Medical sciences,Beijing 100176,china 4 state {3. laboratory for Infectious Disease Prevention and Control,Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Prevention,Beijing 102206,china 5 Beijing Genomics Institute at Shenzhen,Shenzhen 518083.china 1. laboratory of Analytical microbiology State Key Laboratory of Pathogen and Biosecurity Beijing Institute of Microbiology and Epidemiology Beijing 100071 China 2. department of Medical microbiology and Parasitology Institutes of Medical Sciences Shanghai Jiao Tong University School of Medicine Shanghai 200025 China 3. state key laboratory for Molecular Virology and {3. engineering Institute of Pathogen Biology Chinese Academy of Medical Sciences Beijing 100176 China 4. state key laboratory for Infectious Disease Prevention and Control Institute for Communicable Disease Control and Prevention Chinese Center for Disease Control and Prevention Beijing 102206 China 5. Beijing Genomics Institute at Shenzhen Shenzhen 518083 China

Rapid accumulation of bacterial genomic data offered an unprecedented opportunity to understand bacterial biology from a holistic view of *** can thus closely look at the way in which a pathogen is evolved,and these data has been applied to molecular epidemiology and microbial forensics,and screening of novel diagnostic,vaccine and drug *** newly developed high-throughput low-cost sequencing technologies,such as 454,Solexa and SOLiD,will promote the acquisition and application of genomic data in new research areas that we dared not imagine previously,such as the metagenomics of human gastric-intestinal tract,for better and comprehensive understanding of human health and disease.

关键词： genome pathogenic bacteria sequencing application

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Building of hFⅨ transgenic mice by spermatogenic cells

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Chinese science Bulletin 2003年第19期48卷 2061-2063页

作者： WANG Ning, CHEN Xiaoguang, CHEN Li, YAO Jihua, CHEN Haoming, SHEN Qi & XUE Jinglun state key laboratory of {3. engineering, Institute of {3.s, school of life sciences, fudan university, Shanghai 20043., china Correspondence should be addressed to Xue Jinglun (e-mail: jlxue @***) state key laboratory of {3. engineering Institute of Genetics School of Life Sciences Fudan University Shanghai China

Human FⅨ expression vector pCMVⅨ was packaged by EffecteneTM reagent and injected into mice seminiferous tubules with glass pipettes. The expressional frame of pCMVⅨ was examined by PCR and Southern blotting among 41 progenies. There were 2 (4%) mice being integrated with hFⅨ gene into chromosomes. 4.6 ng/mL of hFⅨ protein was expressed in plasma of one mouse, which was tested by ELISA. We demonstrated that building of transgenic animals by spermatogonial stem cells is an efficient method. Meanwhile, it has also been proved to be an alternative choice for mammary gland bioreactor.

关键词：基因转录老鼠精子生成细胞抗血友病因子 FⅨ 表达载体 pCMVⅨ 乳腺生物反应器

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Prokaryotic Expression and Preparation of Polyantibody of Human Histydyl-tRNA Synthetase Related Gene

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Journal of Huazhong university of science and Technology(Medical sciences) 2004年第6期24卷 535-536,555页

作者：孟宪芳施静刘晓春陈金中 department of Neurobiology Tongji Medical College Huazhong University of Science and Technology Wuhan 430030 China state key Library of genetic {3. School of Life Science Fudan University Shanghai 200030 China

Summary: The aim of this study was to express and purify human histydyl-tRNA synthetase related gene and to prepare its polyantibody. The open reading frame was amplified by PCR, and then recombined into prokaryotic expression vector pQE3. and transformed into E. coli M15 for expression. The expressed products were induced by IPTG after the reconstructed pQE3. was transferred into M15. After purified by Ni affinity chromatography, the product was identified to be a single band by SDS-PAGE. The rabbits were inoculated with purified products. High-titer polyantibody was successfully prepared. Highly-purified expression product and prepared polyantibody may provide a good basis for further study.

关键词： human histydyl-tRNA synthetase related gene polyantibody purification

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cDNA Array Analysis of the Differential Expression Change in Virulence-related Genes During the Development of Resistance in Candida albicans

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Acta Biochimica et Biophysica Sinica 2005年第7期37卷 463-472页

作者： Zheng XU Yong-Bing CAO~1 Jun-Dong ZHANG~1 Ying-Ying CAO~1 Ping-Hui GAO~1 De-Jun WANG~1 Xu-Ping FU~2 Kang YING~2 Wan-Sheng CHEN~1 Yuan-Ying JIANG~1 1 department of Pharmacology,school of Pharmacy,Second Military Medical university,Shanghai {3.,china 2 state key laboratory of genetic engineering,Institute of genetics.school of life science,fudan university,Shanghai {3.,china departmentofPharmacology SchoolofPharmacySecondMilitaryMedicalUniversityShanghai200433China

Candida albicans is the most frequently isolated fungus in immunocompromised patientsassociated with mucosal and deep-tissue *** investigate the correlation between virulence andresistance on a gene expression profile in ***,we examined the changes in virulence-related genesduring the development of resistance in *** from bone marrow transplant patients using a constructedcDNA array representing 3.96 *** addition to the genes known to be associated with azole resistance,16 virulence-related genes were identified,whose differential expressions were newly found to be associatedwith the resistant *** expressions for these genes were confirmed by ***,the up-regulation of EFG1,CPH2,TEC1,CDC24,SAP10,ALS9,SNF1,SPO72and BDF1,and the down-regulation of RAD3.,IPF3.3. and UBI4 resulted in stronger virulence andinvasiveness in the resistant isolates compared with susceptible *** findings provide a link betweenthe expression of virulence genes and development of resistance during *** infection in bone marrowtransplant (BMT) patients,where *** induces hyphal formation and expression change in multiplevirulence factors.

关键词： Candida albicans cDNA array resistance virulence

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Sequencing,annotation and comparative analysis of nine BACs of the giant panda(Ailuropoda melanoleuca)

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science china(life sciences) 2010年第1期53卷 107-111页

作者： ZHENG Yang1,2,3.CAI Jing4,LI JianWen3.6,LI Bo3.LIN RunMao3.TIAN Feng3.WANG XiaoLing3.& WANG Jun3.5 1Beijing Institute of Genomics,Chinese Academy of sciences(CAS),Beijing 100029,china 2College of life science,Graduate university of Chinese Academy of sciences,Beijing 100049,china 3.eijing Genomics Institute at Shenzhen,Shenzhen 518083.china 4CAS-Max Planck Junior Research Group on Evolutionary Genomics,state key laboratory of genetic Resources and Evolution,Kunming Institute of Zoology,Chinese Academy of sciences(CAS),Kunming 650223.china 5department of Biology,university of Copenhagen,Copenhagen DK-2200,Denmark 6school of Biological science and engineering,South china university of Technology,Guangzhou 510006,china Beijing Institute of Genomics Chinese Academy of Sciences (CAS) Beijing China College of life science Graduate University of Chinese Academy of Sciences Beijing China Beijing Genomics Institute at Shenzhen Shenzhen China CAS-Max Planck Junior Research Group on Evolutionary Genomics State Key Laboratory of Genetic Resources and Evolution Kunming Institute of Zoology Chinese Academy of Sciences (CAS) Kunming China school of Biological science and engineering South China University of Technology Guangzhou China department of Biology University of Copenhagen Copenhagen Denmark

A 10-fold BAC library for the giant panda was constructed and nine BACs were selected to generate finish *** BACs could be used as a validation resource for the de novo assembly accuracy of the whole genome shotgun sequencing reads of the giant panda newly generated by Illumina GA sequencing *** Sanger sequencing,assembly,annotation and comparative analysis were carried out on the selected BACs of a joint length 878 *** search and de novo prediction methods were used to annotate genes and *** protein coding genes were predicted,seven of which could be functionally *** seven genes have an average gene size of about 41 kb,an average coding size of about 1.2 kb and an average exon number of 6 per ***,seven tRNA genes were *** 27 percent of the BAC sequence is composed of repeats.A phylogenetic tree was constructed using a neighbor-join algorithm across five species,including the giant panda,human,dog,cat and mouse,which reconfirms dog as the most closely related species to the giant *** results provide detailed sequence and structure information for new genes and repeats of the giant panda,which will be helpful for further studies about the giant panda.

关键词： giant panda BAC sequencing assembly annotation evolution

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