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Analysis of tandem repeats in the genome of chinese shrimp Fenneropenaeus chinensis

chinese Science Bulletin 2005年第14期50卷 1462-1469页

作者： KONG Jie1 & GAO Huan2.3.1. Key Laboratory for Sustainable Utilization of Marine Fisheries Re- sources, Ministry of Agriculture, Yellow Sea Fisheris Research Insti- tute, chinese {2. of Fishery {2., Qingdao 2.6071, China 2. {3. of Oceanology, chinese academy of sciences, Qingdao 2.6071, China 3. The Graduate School of the chinese academy of sciences, beijing 10003., China Key Laboratory for Sustainable Utilization of Marine Fisheries Resources Ministry of Agriculture Yellow Sea Fisheris Research Institute Chinese Academy of Fishery Sciences Qingdao China institute of Oceanology Chinese Academy of Sciences Qingdao China The Graduate School of the chinese academy of sciences Beijing China

Through random sequencing, we found a total of 884000 base-pairs (bp) of random genomic sequences in the genome of chinese shrimp (Fenneropenaeus chinensis). Using bio-soft Tandem Repeat Finder (TRF) software, 2.59 tandem repeats were found, in which there were 1714 mi- crosatellites and 445 minisatellites, accounting for 79.4% and 2..6% of repeat sequences, respectively. The cumulative length of repeat sequences was found to be 116685 bp, ac- counting for 13.2. of the total DNA sequence; the cumula- tive length of microsatellites occupied 9.78% of the total DNA sequence, and that of minisatellites occupied 3.42.. In decreasing order, the 2. most abundant repeat sequence classes were as follows: AT (557), AC (471), AG (2.4), AAT (92., A (56), AAG (2.), ATC (2.), ATAG (2.), AGG (18), ACT (15), C (11), AAC (11), ACAT (11), CAGA (10), AGAA (9), AGGG (7), CAAA (7), CGCA (6), ATAA (6), AGAGAA (6). Dinucleotide repeats, not only in the aspect of the number, but also in cumulative length, were the preponderant repeat type. There were few classes and low copy numbers of repeat units of the pentanucleotide repeat type, which included only three classes: AGAGA, GAGGC and AAAGA. The classes and copy numbers of heptanucleotide, eleven-nucleotide and thirteen-nucleotide primer-number-composed repeats were distinctly less than that of repeat types beside them.

关键词：虾遗传特性遗传基因 DNA

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Quantitative assessment of the complexity of geological structures in terms of seismic propagators

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Science China Earth sciences 2010年第1期53卷 54-63页

作者： FU LiYun Key Laboratory of the Earth’s Deep Interior,institute of geology and {2.,{3. academy of sciences,beijing 1.002.,China 1. Key Laboratory of the Earth’s Deep Interior Institute of Geology and Geophysics Chinese Academy of Sciences Beijing 100029 China

How a wave interacts with heterogeneous media has been pursued by many *** complexity of subsurface heterogeneities is seismologically a relative concept to wavelengths of seismic waves.A growing perception is that velocity variations,propagation angles,and computational accuracies are closely related at a variety of scales.A tentative strategy to quantitatively evaluate the complexity of subsurface heterogeneous media is presented in this article to see what scales of geological heterogeneities to be captured by *** express complex subsurface structures as the slowness-and angularheterogeneity spectra to quantify velocity contrasts and dipping-angle distributions of complex geological *** the other hand,the scaling characteristics of a propagator are measured through dispersion analysis by its angular spectra plotted against refractive indexes and propagation angles,respectively.A parameter termed as imaging efficiency is introduced by associating the geological heterogeneity spectra with the propagator's angular spectra to understand the coherent interference between the medium's heterogeneity and the propagator's scaling ***,a complexity coefficient can be defined to evaluate geological complexities in terms of *** application of this strategy is demonstrated to the SEG/EAEG salt model.

关键词： geological heterogeneity spectra seismic imaging propagator’s angular spectra imaging efficiency complexity coefficient

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Chronology of Holocene lacustrine sediments in Co Ngoin, central Tibetan Plateau

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Science China Earth sciences 2006年第9期49卷 991-1001页

作者： WU Yanhong1, WANG Sumin1& HOU Xinhua1,3.1. Key Laboratory of Lake Sedimentation and Environment, Nanjing institute of Geography and Limnology,{2., Nanjing 2.0008, China 2. institute of Tibetan Plateau Research,{2., beijing 10085, China 3. Graduate University of{2., beijing 10003., China 1. Key Laboratory of Lake Sedimentation and Environment Nanjing Institute of Geography and Limnology Chinese Academy of Sciences Nanjing 210008 China 2. institute of Tibetan Plateau Research Chinese Academy of Sciences Beijing 10085 China 3. Graduate University of chinese academy of sciences Beijing 100039 China

Chronology is the basis for using lacustrine sediments to reconstruct the history of en-vironmental change. Radioactive-nuclides such as 14C, 2.0Pb and 13.Cs dating are mainly used to establish the chronology for recent several ten thousand years. Because of being mixed with “dead carbon”, the measured 14C age is always older than the actual age which is recognized as “reservoir effect”. Cs is a kind of active metal element, and easy to migrate vertically in the sediment that leads to the error of the time marker. 2.0Pb dating should make sure to select CIC model or CRS model. On the Tibetan Plateau, most of the lakes are alkaline closed lake where Cs is more moveable in the sediment and the reservoir effect caused by “dead carbon” on 14C dating is stronger. Based on the analysis on results of 14C, 2.0Pb and 13.Cs of the lacustrine sediments from Co Ngoin, central Tibetan Plateau, we use the simple regression method to re-calculate the 14C calendar ages, and establish the time sequence for cores CE-1 and CE-2.with result of 2.0Pb CRS model for the upper 3. cm and re-calculated 14C calendar age for sediments bellow 3. cm. Since 1400 cal. a BP, sedimentation inter-rupted for more than 1000 years. According to this time sequence, variations of environmental proxies confidently reflect the major climatic events in Holocene.

关键词： 14C, 2.0Pb and 13.Cs, chronology, lacustrine sediments, climatic event, Co Ngoin, central Tibetan Plateau.

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Representation of microscale ocean wavenumber spectrum correct to the second order

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Science China Earth sciences 2005年第4期48卷 549-554页

作者： YUAN Yeli2.& HUA Feng1,2.3.1. institute of Oceanology,{2., Qingdao 2.6071, China 2. Key Laboratory of Marine Science and Numerical Modeling, State Oceanic Administration, Qingdao 2.6061, China 3. Graduate School of the{2., {3. 10003., China 1. Key Laboratory of Marine Science and Numerical Modeling State Oceanic Administration 266061 Qingdao China 2. institute of Oceanology Chinese Academy of Sciences 266071 Qingdao China 3. Graduate School of the chinese academy of sciences 100039 Beijing China

In this paper, the analytical representations of four wave source functions in high-frequency spectrum range are given on the basis of ocean wave theory and dimensional analysis, and the perturbation method is used to solve the governing equations of ocean wave high-frequency spectrum on the basis of the temporally stationary and locally homogeneous scale relations of microscale wave. The microscale ocean wavenumber spectrum correct to the second order has an explicit structure, its first order part represents the equilibrium between dif- ferent source functions, and its second order part represents the contribution of microscale wave propagation.

关键词： temporally stationary and locally homogeneous, source function in high-frequency spectrum range, microscale ocean wavenumber spectrum.

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A new DNA algorithm to solve graph coloring problem

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Progress in Natural Science:Materials International 2007年第6期17卷 733-738页

作者： Jiang Xingpeng1, Li Yin2. Meng Ya3.and Meng Dazhi2.1. National Laboratory of Pattern Recognition,institute of Automation,{2., {2. 100080, China 2. College of Applied {3., {2. University of Technology, beijing 1.002., China 3. School of Science, {2. institute of Technology, {2. 100081, China) National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing 100080 China College of Applied sciences Beijing University of Technology Beijing 100022 China School of Science Beijing Institute of Technology Beijing 100081 China

Using a small quantity of DNA molecules and little experimental time to solve complex problems successfully is a goal of DNA computing. Some NP-hard problems have been solved by DNA computing with lower time complexity than conventional computing. However, this advantage often brings higher space complexity and needs a large number of DNA encoding molecules. One example is graph coloring problem. Current DNA algorithms need exponentially increasing DNA encoding strands with the growing of problem size. Here we propose a new DNA algorithm of graph coloring problem based on the proof of four-color theorem. This algorithm has good properties of needing a relatively small number of operations in polynomial time and needing a small number of DNA encoding molecules (we need only 6R DNA encoding molecules if the number of regions in a graph is R).

关键词： DNA computing NP-hard problem graph coloring problem.

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δD values of escaped H_2.from hot springs at the Tengchong Rehai geothermal area and its origin

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chinese Science Bulletin 2002年第2期47卷 146-149页

作者： SHANGGUAN Zhiguan & HUO Weiguo institute of geology, China Seismological Bureau,{2., China institute of geology and geophysics, chinese academy of sciences,{2., China institute of geology China Seismological Bureau Beijing 100029 China

Here we give the δD values of escaped H2.from hot springs at the Tengchong Rehai and adjacent regions, and deal with a genetic correlation between the increment H2.in escaped gases from middle-shallow reservoirs and the H2., CH4 derived from deep sources. Isotopic compositions of H2.indicate that the generation of increment H2.may be related to recent strong activity of N-W trending fault at the Rehai area. Trace monitoring the H2.release could be significant in order to keep watch on present activity of that fault.

关键词： Rehai geothermal area hydrogen stable isotopic composition.

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TIME-IGGCAS model validation:Comparisons with empirical models and observations

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Science China Technological sciences 2008年第3期51卷 308-322页

作者： YUE XinAn1,2.3. WAN WeiXing1, LIU LiBo1, NING BaiQi1, ZHAO BiQiang1 & ZHANG ManLian1 1 institute of {2. and {2.,{3., beijing 1.002., China 2.Wuhan institute of Physics and Mathematics,{3., Wuhan 43.071, China 3.Graduate University,{3., beijing 100049, China 1. institute of geology and {2. Chinese Academy of Sciences Beijing 100029 China 2. Wuhan institute of Physics and Mathematics Chinese Academy of Sciences Wuhan 430071 China 3. chinese academy of sciences Graduate University Beijing 100049 China

The TIME-IGGCAS (Theoretical Ionospheric Model of the Earth in institute of Ge- ology and geophysics,{2.) has been developed re- cently on the basis of previous works. To test its validity, we have made compari- sons of model results with other typical empirical ionospheric models (IRI, NeQuick-ITUR, and TItheridge temperature models) and multi-observations (GPS, Ionosondes, Topex, DMSP, FORMOSAT, and CHAMP) in this paper. Several conclu- sions are obtained from our comparisons. The modeled electron density and elec- tron and ion temperatures are quantitatively in good agreement with those of em- pirical models and observations. TIME-IGGCAS can model the electron density variations versus several factors such as local time, latitude, and season very well and can reproduce most anomalistic features of ionosphere including equatorial anomaly, winter anomaly, and semiannual anomaly. These results imply a good base for the development of ionospheric data assimilation model in the future. TIME-IGGCAS underestimates electron temperature and overestimates ion tem- perature in comparison with either empirical models or observations. The model results have relatively large deviations near sunrise time and sunset time and at the low altitudes. These results give us a reference to improve the model and enhance its performance in the future.

关键词： ionosphere theoretical model empirical model satellite observation relative deviation

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Searching for the remains of subducted continental slabs

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chinese Science Bulletin 2000年第5期45卷 385-386页

作者： LIU Guangdinginstitute of geology and {2.,{3., beijing 100101, China institute of geology and {2. Chinese Academy of Sciences Beijing China

On the basis of oceanic geological and geophysical observations the global plate tectonics theory wasput forward in the late 1960s. It inherited the essence of mobilism of continental drift and sea-floorspreading, caused a revolution of earth sciences in the twentieth century. But plate tectonics cannotsatisfactorily explain the complicated geological phenomena of continents, it fails in elucidating

关键词： Searching for the remains of subducted continental slabs der Nature

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Sea level variations in the South China Sea inferred from satellite gravity,altimetry,and oceanographic data

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Science China Earth sciences 2012年第10期55卷 1696-1701页

作者： FENG Wei 1,2.ZHONG Min 1,3.& XU HouZe 1,3.1 State Key Laboratory of Geodesy and Earth’s Dynamics,{2. of Geodesy and geophysics,{2. {3. of sciences,Wuhan 43.077,China 2.Graduate University of chinese academy of sciences,beijing 100049,China 3.{2. of geophysics,Huazhong University of Science and Technology,Wuhan 43.074,China 1. State Key Laboratory of Geodesy and Earth’s Dynamics Institute of Geodesy and Geophysics Chinese Academy of Sciences Wuhan 430077 China2. Graduate University of Chinese Academy of Sciences Beijing 100049 China3. Institute of Geophysics Huazhong University of Science and Technology Wuhan 430074 China

Sea level variations(SLVs) can be divided into two major components:the steric SLV and the mass-induced *** two components of SLV in the South China Sea(SCS) are studied by using satellite altimetry,GRACE(Gravity Recovery and Climate Experiment) satellite gravity,and oceanographic data on annual and inter-annual *** the annual timescale,the geographic distribution of mass-induced SLV's amplitude jointly estimated from altimetry and the ECCO(Estimation of the Circulation and Climate of the Ocean) model agrees very well with that from *** observes obvious seasonal mass-induced SLV in the SCS with annual amplitude of 2.7±0.4 cm,which is consistent with the annual amplitude of 2.7±0.3.cm estimated from the steric-corrected *** the inter-annual timescales,the mean SLV in the SCS shows a large oscillation,which is mainly caused by the steric *** trend of mean SLV inferred from altimetry in the SCS is 5.5±0.7 mm/yr for the period of 1993.2.09,which is significantly higher than the global sea level rise rate of 3.3.0.4 mm/yr in the same *** is no obvious trend signal in the mass-induced SLV detected from GRACE that indicates the water exchange between the SCS and its adjacent seas and land is in balance within the study period.

关键词： altimetry GRACE ECCO the South China Sea sea level variation

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Integrated precise orbit determination of Shenzhou IV unmanned spacecraft

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Science China(Technological sciences) 2004年第5期47卷 518-525页

作者： L Congmin1,2. GU Yidong3. LIN Baojun3.& GUO Jiong3.1. Center for Space Science and Applied Research, chinese academy of sciences, beijing 100080, China 2. Graduate School of the chinese academy of sciences, beijing 10003., China 3. General Establishment of Space Science and Application, chinese academy of sciences, beijing 100080, China Correspondence should be addressed to L Congmin 1. Center for Space Science and Applied Research Chinese Academy of Sciences 100080 Beijing China 2. Graduate School of the chinese academy of sciences 100039 Beijing China 3. General Establishment of Space Science and Application Chinese Academy of Sciences 100080 Beijing China

Considering the characteristic orbit of Shenzhou IV spacecraft and the advantages and disadvantages of several types of domestic orbit measurements, a scheme of IPOD is determined, which uses GPS, SLR and USB observation data jointly plus precise ionosphere corrections to GPS observation data. IPOD system and mathematic models of OD are introduced. The results of different joint OD are analyzed using true observation data, and show that radial accuracy is better than 2.m.

关键词： Shenzhou IV unmanned spacecraft integrated precise orbit determination GPS SLR USB.

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