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Analysis of tandem repeats in the genome of chinese shrimp Fenneropenaeus chinensis

chinese Science Bulletin 2005年第14期50卷 1462-1469页

作者： KONG Jie1 & GAO Huan2.3.1. Key Laboratory for Sustainable Utilization of Marine Fisheries Re- sources, Ministry of Agriculture, Yellow Sea Fisheris Research Insti- tute, chinese Academy of Fishery {2., Qingdao 2.6071, china 2. Institute of Oceanology, chinese Academy of {2., Qingdao 2.6071, china 3. The graduate School of the chinese Academy of {2., beijing 10003., china Key Laboratory for Sustainable Utilization of Marine Fisheries Resources Ministry of Agriculture Yellow Sea Fisheris Research Institute Chinese Academy of Fishery Sciences Qingdao China Institute of Oceanology Chinese Academy of Sciences Qingdao China The graduate School of the chinese Academy of {2. Beijing China

Through random sequencing, we found a total of 884000 base-pairs (bp) of random genomic sequences in the genome of chinese shrimp (Fenneropenaeus chinensis). Using bio-soft Tandem Repeat Finder (TRF) software, 2.59 tandem repeats were found, in which there were 1714 mi- crosatellites and 445 minisatellites, accounting for 79.4% and 2..6% of repeat sequences, respectively. The cumulative length of repeat sequences was found to be 116685 bp, ac- counting for 13.2. of the total DNA sequence; the cumula- tive length of microsatellites occupied 9.78% of the total DNA sequence, and that of minisatellites occupied 3.42.. In decreasing order, the 2. most abundant repeat sequence classes were as follows: AT (557), AC (471), AG (2.4), AAT (92., A (56), AAG (2.), ATC (2.), ATAG (2.), AGG (18), ACT (15), C (11), AAC (11), ACAT (11), CAGA (10), AGAA (9), AGGG (7), CAAA (7), CGCA (6), ATAA (6), AGAGAA (6). Dinucleotide repeats, not only in the aspect of the number, but also in cumulative length, were the preponderant repeat type. There were few classes and low copy numbers of repeat units of the pentanucleotide repeat type, which included only three classes: AGAGA, GAGGC and AAAGA. The classes and copy numbers of heptanucleotide, eleven-nucleotide and thirteen-nucleotide primer-number-composed repeats were distinctly less than that of repeat types beside them.

关键词：虾遗传特性遗传基因 DNA

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Research on the method for retrieving soil moisture using thermal inertia model

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Science china Earth sciences 2006年第5期49卷 539-545页

作者： LIU Zhenhua1 & ZHAO Yingshi2.1. Information College, South china Agricultural university, Guangzhou 510642. china 2. {3. university of chinese Academy of sciences, beijing 100049, china 1. Information College South China Agricultural University Guangzhou 510642 China 2. graduate university of {2. Academy of {3. Beijing 100049 China

In order to improve accuracy of soil moisture inversion using remote sensing, a new thermal inertia model is proposed in this paper. The improved model needs only surface maximum temperature as the temperature parameter input instead of input of the surface temperature difference, as well as the surface sensible and latent fluxes are introduced into boundary conditions of thermal conductivity equation. Furthermore, surface soil conductive heat transfer equation of two-layer model is used to solve the soil thermal inertia so that the remote sensing thermal inertia method can be ap- plied to regions with better-covered vegetation, but usually only for the bare areas or worse vegetation covered areas. The model has been tested at several locations in the area of west Inner Mongolia. Comparing the simulation of the new model with the measurements obtained by apparent thermal inertia and by field test, the result shows that the inertia thermal model can be used to estimate soil moisture in more reasonable accuracy.

关键词： thermal model, thermal conductivity equation, soil initial, sensible flux, latent flux, two-layer model.

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Geochemical simulation of the formation of brine and salt minerals based on Pitzer model in Caka Salt Lake

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Science china Earth sciences 2004年第8期47卷 720-726页

作者： LIU Xingqi1, CAI Keqin2.& YU Shengsong3.1. Nanjing Institute of Geography and Limnology, chinese Academy of {2., Nanjing 2.0008, china 2. china university of Geo{2., beijing 100083. china 3. Institute of Salt Lakes, chinese Academy of {2., Xining 810008, china 1. Nanjing Institute of Geography and Limnology Chinese Academy of Sciences 210008 Nanjing China 2. china university of Geo{2. 100083 Beijing China 3. Institute of Salt Lakes Chinese Academy of Sciences 810008 Xining China

The geochemical simulation of the formation of brine and salt minerals based on Pitzer model was made in Caka Salt Lake. The evolution of the mixed surface-water and the mineral sequences were calculated and compared with the hydrochemical compositions of the brine and the salt minerals of the deposit in Caka Salt Lake. The results show that the formation temperature of the lake is between 0°C and 5°C, which is well identical with other studies. The mixing of salt-karst water with the surface waters, neglected by the former researchers, is very important to the formation of the lake, indicating that the initial waters resulting in the formation of the lake are multi-source. It is the first time to use Pitzer model in china for making geochemical simulation of the formation and evolution of inland salt lake and satisfactory results have been achieved.

关键词： Pitzer model,Caka Salt Lake,geochemical simulation,salt-karst water.

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A 12.bit multichannel ADC for pixel detectors in particle physics and nuclear imaging

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Science china(Technological sciences) 2010年第5期53卷 1208-1214页

作者： WEI Wei1,2.3.WANG Zheng1,3.& ZHAO JingWei1,3.1 Institute of High Energy Physics,chinese Academy of sciences,beijing 100049,{3. 2.graduate university of chinese Academy of sciences,beijing 100049,{3. 3.Key Lab of Nuclear Detection Technology and Nuclear Electronics of chinese Academy of sciences,beijing 100049,{3. 1. Institute of High Energy Physics Chinese Academy of Sciences Beijing 100049 China2. Graduate University of Chinese Academy of Sciences Beijing 100049 China3. Key Lab of Nuclear Detection Technology and Nuclear Electronics of Chinese Academy of Sciences Beijing 100049 China

Modern pixel detectors in nuclear and particle physics experiments and also in nuclear imaging,starve for highly integrated application specified integrated circuit(ASIC),whereas in china the study of ASIC still stays far away from practical *** lack of ASIC strictly limits the research and development of domestic high energy physics field.A 12.bit multichannel ADC designed for high density readout is introduced as a major candidate for solution.A precise model is discussed and the simulation fully agrees with the model,which indicates a key principle of *** is performed according to the given rule,and novel layout techniques are carried *** results in all aspects are also obtained,showing an excellent real performance,which satisfies the practical requirement.

关键词： application specified integrated circuit high density readout Wilkinson ADC multi-channel ADC

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Spatial heterogeneity of the driving forces of cropland change in china

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Science china Earth sciences 2005年第12期48卷 2231-2240页

作者： LIU Xuhua1,2. WANG Jinfeng1, LIU Mingliang4,1 & MENG Bin1,2.3.1. Institute of Geographic sciences and Natural Resources Research, {2. Academy of sciences, {3. 100101, china 2. graduate School of the {2. Academy of sciences, beijing 10003., china 3. College of Arts and sciences of {3. Union university, {3. 100083. china 4. School of Forestry and Wildlife sciences, Auburn university, Auburn, Alabama, AL3.849, USA 1. Institute of Geographic sciences and Natural Resources Research Chinese Academy of Sciences 100101 Beijing China 2. graduate School of the chinese Academy of {2. 100039 Beijing China 3. School of Forestry and Wildlife sciences Auburn University Auburn AL36849 Alabama USA 4. College of Arts and sciences of beijing Union {2. 100083 Beijing China

By using digital satellite remote sensing data acquired in 1987―1989 and 1999―2.00 and GIS combined with the natural and socio-economic data, this paper drew an integrated zonation of the cropland change and its driving forces in china. The results indicated that the cropland change in the study period was constrained by geographical factors and driven by cli-mate change as well as socio-economic system. Moreover, the regional differences of the drivers for cropland change were significant. In the midwest of china, natural condition changes and geographical background were the main constraints and drivers, while in Eastern china, social and economic changes and economic policies were the main driving forces. The cropland loss was nationwide. The dominant factors to cause this decrease included buildup of developing area to attract foreign capital and technologies, changes of industry structure due to urban in-fluence, the change of employment notions thanks to living standard improvement, rapid ur-banization due to the expansion of cities and towns, the diminished farming net income partly because of the global warming effects, and the rapid economic growth stimulated by the con-venient transportation system. These factors interact and interdepend with each other to cause the cropland loss in china recently. The reasons for the increase of cropland were primarily the cultivation and deforestation by the farmers who want to increase income. This study on the mechnism of LUCC relied on the cropland change integrated classification considering the natural or human factors both inside and outside the region, which provides a new approach to study the integrated regionalization and LUCC mechanism.

关键词： land use change, driving force, integrated classification, spatial statistics, cropland, china.

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Formal analysis and design of multi-party fair exchange protocols

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Science in china(Series F) 2006年第2期49卷 155-174页

作者： QING Sihan1,2.3.& LI Gaicheng1,3.1. Engineering Research Center for Information Security Technology, Institute of Software, {2. Academy of sciences, beijing 100080,{3. 2. beijing Zhongke Ansheng Corporation of Information Technology, beijing 100080,{3. 3. graduate School of the {2. Academy of sciences, beijing 10003.,{3. 1. Engineering Research Center for Information Security Technology Institute of Software Chinese Academy of Sciences Beijing 100080 China 2. beijing Zhongke Ansheng Corporation of Information Technology Beijing 100080 China 3. graduate School of the {2. Academy of sciences Beijing 100039 China

Based on the origin of message items and channel combination between transacting parties, and events and relations among events, this paper presents a concise, precise, and hierarchical model for general fair exchange protocols, formally specifies various security requirements which are able to reflect inherent requirements for fair exchange protocols more rigorously, and partition these security requirements with fine granularity. This work helps analyze, debug, and design multi-party fair exchange protocols more effectively and elaborately,

关键词： fair exchange logical protocol formal model security requirement.

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H_2.O and H110α survey toward UCHII regions

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Research in Astronomy and Astrophysics 2011年第2期11卷 156-162页

作者： Xiao-Hong Han graduate university of {2. Academy of {3., beijing 100049, china National Astronomical Observatories / Urumqi Observatory Chinese Academy of Sciences Urumqi 830011 China graduate university of {2. Academy of {3. Beijing 100049 China

We report results of the H2.O and H110α survey toward 2.1 UCHII regions using the Urumqi 2.m radio *** obtained 3. new H2.O detections,and H110α was simultaneously detected in eight of *** H110α was detected in another UCHII *** calculated kinematic distances of nine UCHII regions with the detected H110α and resolved the kinematic distance ambiguity for six of *** detection rate of H2.O of our observation was 13.2.,which is low compared with one of the other *** possible reason is that the sensitivity of our telescope is relatively low.

关键词： ISM: HII regions -- ISM: molecules -- radio lines: ISM

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Compression behavior of Zr_(41)Ti_(14)Cu_(12.5)Ni_(10)Be_(2..5) bulk metallic glass up to 2. GPa

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Science china(Physics,Mechanics & Astronomy) 2005年第3期48卷 319-324页

作者： LI Gong 1, 2., ZHAN Zaiji 2., LIU Jing 3., YUN Jinku 1 , SUN Liling 2., LIU Riping 1 , ZHANG Jun 2.& WANG Wenkui 1, 2.1. Key Laboratory of Metastable Materials Science and Technology, Yanshan university, Qinhuangdao 066004,{2. 2. Center for Condensed Matter Physics, Institute of Physics, chinese Academy of {3., beijing 100080,{2. 3. BSRF, Institute of High Energy Physics, chinese Academy of {3., beijing 10003.,{2. 1. Key Laboratory of Metastable Materials Science and Technology Yanshan University 066004 Qinhuangdao China 2. Center for Condensed Matter Physics Institute of Physics Chinese Academy of Sciences 100080 Beijing China 3. BSRF Institute of High Energy Physics Chinese Academy of Sciences 100039 Beijing China

The compression of a Zr41Ti14Cu12.5Ni10Be2..5 bulk metallic glass (BMG) is investigated at room temperature up to 2. GPa using in-situ high pressure energy dispersive X-ray diffraction with a synchrotron radiation source. The pressure-induced structural relaxation is exhibited. It is found that below about 8 GPa, the existence of excess free volume contributes to the rapid structural relaxation, which gives rise to the rapid volumetric change, and the structural relaxation results in the structural stiffness under higher pressure.

关键词： bulk metallic glass, high pressure, structural relaxation, synchrotron radiation.

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Formal Verification under Unknown Constraints

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Wuhan university Journal of Natural sciences 2005年第1期10卷 43-46页

作者： LI Guang-hui 1,2.3., LI Xiao-wei 2.3.. School of Information Engineering, Zhejiang Forestry College, Hangzhou 3.13.0, Zhejiang, china 2. Institute of Computing Technology, chinese Academy of sciences, {3. 100080, china 3. graduate School of the chinese Academy of sciences, beijing 10003., china School of Information Engineering Zhejiang Forestry College Hangzhou 311300 Zhejiang China

We present a formal method of verifying designs with unknown constraints (e.g., black boxes) using Boolean satisfiability (SAT). This method is based on a new encoding scheme of unknown constraints, and solves the corresponding conjunctive normal form (CNF) ***,this method can avoid the potential memory explosion, which the binary decision diagram (BDD) based techniques maybe suffer from, thus it has the capacity of verifying large designs. Experimental results demonstrate the efficiency and feasibility of the proposed method.

关键词： formal verification unknown constraints black box Boolean satisfiability Boolean comparison

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Cloning and expression of putative ethylene receptor genes in soybean plant

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Progress in Natural Science:Materials International 2007年第10期17卷 1152-1160页

作者： Xie Zongming1,2.3. Lei Gang1,2. Wuriyanghan Hada1,2. Tian Aiguo1, Zhang Jinsong1 and Chen Shouyi1(1. National Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, chinese Academy of {2., beijing 100101,{3. 2. graduate School of chinese Academy of {2., beijing 10003.,{3. 3. Xinjiang Academy of Agricultural and Reclamation Science, Shihezi 83.000,{3.) National Key Laboratory of Plant Genomics Institute of Genetics and Developmental Biology Chinese Academy of Sciences Beijing 100101 China graduate School of chinese Academy of {2. Beijing 100039 China Xinjiang Academy of Agricultural and Reclamation Science Shihezi 832000 China

Ethylene plays important roles in plant growth, development, and stress responses, and ethylene receptors have been identified and studied extensively in various plant species. Here we report the cloning of four ethylene receptor genes from soybean, i.e. GmETR1, GmERS1, GmETR2.and GmEIN4. Construction of the phylogenic tree showed that GmETR1 and GmERS1 belong to subfamily I whereas GmETR2.and GmEIN4 belong to subfamily II. The four ethylene receptor genes showed different tissue-specific expression patterns in roots, stems, leaves, cotyledons, flowers, pods and seeds of soybean. These genes were differentially regulated by various abiotic stresses and plant hormones. The possible roles of the four genes in soybean plant were also discussed.

关键词： abiotic stress expression analysis ethylene receptor plant hormone soybean.

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