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Sequence analysis of mRNA polyadenylation signals of rice genes

chinese Science Bulletin 2006年第9期51卷 1069-1077页

作者： LU Ying1, 2. GAO Chenxi1,2.3.& HAN Bin1,3.41. National Center for Gene Research, Shanghai Institutes for Biological {2., chinese Academy of {2., Shanghai 2.02.0},{3. 2. graduate School of the chinese Academy of {2., beijing 10003.,{3. 3. Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological {2., chinese Academy of {2., Shanghai 2.003.,{3. National Center for Gene Research Shanghai Institutes for Biological Sciences Chinese Academy of Sciences Shanghai 200233 China graduate School of the chinese Academy of {2. Beijing 100039 China Institute of Plant Physiology and Ecology Shanghai Institutes for Biological Sciences Chinese Academy of Sciences Shanghai 200032 China

The formation of eukaryotic mRNAs involves the cleavage and polyadenylation of pre- mRNAs. To investigate the sequence requirement of putative polyadenylation signals (PASs), poly(A) sites and downstream elements (DUEs) in 3.-end-pro- cessing in rice, we compared expressed sequences tags (ESTs) with poly(A) extremity to full-length cDNA sequences and constructed a database of 12.69 pre- mRNA sequences in ?40―+40 nt surrounding the poly(A) sites, which were from 9953.genes. The al- ternative poly(A) sites were revealed in approxi- mately 2.% of mRNAs. Nearly 80% of pre-mRNAs showed stringent requirement of the YA (CA or UA) at poly (A) sites for polyadenylation. About 7.9% had the AAUAAA signals on ?40―?1 nt upstream of the poly(A) sites. Over 60% of mRNAs probably used the one- or two-base variants of AAUAAA hexamers as their PASs in 3. fragments. The single-base variants of AAUGAA revealed the high frequency in 11.5% of 3. fragments. The DUEs were detected in 90% of pre- mRNAs, especially more than half of the pre-mRNAs with multi-base variants of AAUAAA had the DUEs surrounding the poly(A) site. The location of DUE is also important for defining the cleavage site. Al- though most of the rice pre-mRNAs did not contain AAUAAA signal, the existence of downstream ele- ments ensured the efficiency of cleavage-polyade-

关键词：多聚腺苷酸序列分析 mRNA 水稻基因工程

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Physical mechanisms of plant roots affecting weathering and leaching of loess soil

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Science china Earth sciences 2006年第9期49卷 1002-1008页

作者： LI Yong1,2. ZHANG Qingwen1,2. WAN Guojiang3. HUANG Ronggui3. PIAO Hechun3. BAI Lingyu2.& LI Lu2.1. State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, chinese Academy of sciences, Yangling 712.00, china 2. Institute of Agro-Environment and Sustainable Development, chinese Academy of Agricultural sciences, beijing 100081, china 3. Institute of Geochemistry, chinese Academy of sciences, Guiyang 550002. china 1. State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau Institute of Soil and Water Conservation Chinese Academy of Sciences Yangling 712100 China 2. Institute of Agro-Environment and Sustainable Development Chinese Academy of Agricultural Sciences Beijing 100081 China 3. Institute of Geochemistry Chinese Academy of Sciences Guiyang 550002 China

Plant roots have potential impacts on soil mineral weathering and *** objective is to understand the physical mechanisms of plant roots affecting weathering andleaching of loess soil. Root densities were measured through the method of a large-size dug profile,and transport fluxes of soil elements were determined using an undisturbed monolith soilinfiltration device on the hilly and gully regions of the chinese Loess Plateau. The results showthat the improvement effects of soil environment by plant roots are mainly controlled by the densityand weight of the fibrous roots with the diameters less than 1 mm. Plant roots have the strongereffects on soil physical properties than chemical properties. The principal components analysis(PCA) indicates that soil physical properties by plant roots account for 56.7% of variations in soilenvironment whereas soil chemical properties and pH contribute about 2..2. of the soil *** roles of plant roots in controlling soil weathering and leaching increased in the followingorder: infiltration enhancement > increase of bio-active substance > stabilization of soilstructure. The effects of plant roots on soil mineral weathering and leaching can be quantifiedusing the multiple regression models with the high prediction accuracies developed in this study.

关键词： plant roots, soil weathering and leaching rates, soil environment field, principal components analysis (PCA), chinese Loess Plateau.

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Modeling of elastic wave propagation on a curved free surface using an improved finite-difference algorithm

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Science china(Physics,Mechanics & Astronomy) 2004年第5期47卷 633-648页

作者： WANG Xiuming1,3.& ZHANG Hailan2.1. CSIRO Petroleum, ARRC, PO BOX 113., Technology Park, Bentley, WA 6102. Australia 2. Institute of Acoustics, {2. Academy of sciences, beijing 100080,{3. 3. Present address: Institute of Acoustics, {2. Academy of sciences, beijing 100080,{3. 1. CSIRO Petroleum ARRC Technology Park PO BOX 1130 6102 Bentley WA Australia 2. Institute of Acoustics Chinese Academy of Sciences 100080 Beijing China

Based on existing direct and imaging methods of a staggered finite-difference scheme, an improved algorithm for staggered finite-difference is proposed to implement rugged topographic free boundary conditions. This method assumes that the free surface can be implemented with horizontal and vertical free surface segments and their corners; the free surface passes through the grid points of shear stress components, instead of the normal stress components. Imaging is carried out for stress components in both horizontal and vertical directions, thus increasing the accuracy. To update particle- velocities, imaging and updating are first performed in the horizontal direction, and then in the vertical direction. The numerical results for elastic flat horizontal free surface with the imaging method and those for flat free surfaces of various slope angles with the proposed method are compared, and are shown to be in good agreement. The advantage of the proposed method is that only the stresses are dealt with in implementing the free surface into the staggered algorithm, which improves computation efficiency.

关键词： elastic wave simulation, curved free surface, staggered finite-difference, algorithm stability.

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Regional soil moisture simulation for Shaanxi Province using SWAT model validation and trend analysis

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Science china Earth sciences 2010年第4期53卷 575-590页

作者： LI MingXing1,2.MA ZhuGuo1 & DU JiWen3.1 Key Laboratory of Regional Climate-Environment Research for Temperate East Asia,Institute of Atmospheric Physics,chinese Academy of {2.,beijing 10002.,{3. 2.graduate University of chinese Academy of {2.,beijing 100049,{3. 3.Shaanxi Administration of Meteorology,Xi’an 710014,{3. 1. Key Laboratory of Regional Climate-Environment Research for Temperate East Asia Institute of Atmospheric Physics Chinese Academy of Sciences Beijing 100029 China2. Graduate University of Chinese Academy of Sciences Beijing 100049 China3. Shaanxi Administration of Meteorology Xi’an 710014 China

The soil moisture in Shaanxi Province,a region with complex topography,is simulated using the distributed hydrological model Soil Water Assessment Tool(SWAT).Comparison and contrast of modeled and observed soil moisture show that the SWAT model can reasonably simulate the long-term trend in soil moisture and the spatiotemporal variability of soil moisture in the *** to NCEP/NCAR and ERA40 reanalysis of soil moisture show that the trend of variability in soil moisture simulated by SWAT is more consistent with the *** model results suggested that high soil moisture in surface soil layers appears in the southern Shaanxi with high vegetation cover,and the Qinling mountainous region with frequent orographic *** deeper soil layers,high soil moisture appears in the river basins and *** regional soil moisture showed a generally decreasing trend on all soil layers from 1951 to 2.04,with a stronger and significant decreasing trend in deeper soil layers,especially in the northern parts of the province.

关键词： SWAT soil moisture content simulation validation trend analysis

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The solid lubricating material experiment device for Shenzhou-7 Spaceship

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Science china(Technological sciences) 2010年第9期53卷 2521-2527页

作者： WANG Ke1,2.REN WeiJia1,WANG ShiDa1 & WENG LiJun3.1 Academy of Opto-Electronics,chinese Academy of {2.,beijing 100190,{3. 2.graduate University of chinese Academy of {2.,beijing 100049,{3. 3.Lanzhou Institute of Chemical Physics,chinese Academy of {2.,Lanzhou 73.000,{3. 1. Academy of Opto-Electronics Chinese Academy of Sciences Beijing 100190 China2. Graduate University of Chinese Academy of Sciences Beijing 100049 China3. Lanzhou Institute of Chemical Physics Chinese Academy of Sciences Lanzhou 730000 China

A solid lubricating material exposure experiment in space is one of the missions during the seventh manned spaceflight of china,and the key is to develop a device which can be fixed reliably outside of the orbital module and can be fetched conveniently by an astronaut during space *** solid lubricating material experiment device needs to be locked reliably in a vibrating and impacting environment during the launch phase,and should meet the requirement that it can be unlocked and fetched reliably by the astronaut wearing an extravehicular spacesuit via simple operations in orbit in an environment of high and low *** for the device we developed,the environmental characteristic of the mission was analyzed,the mechanical analysis and thermal analysis were carried out,and then a mechanism with functions of mechanical locking,structural self-locking and manual unlocking was *** device was verified by a sequence of experiments and was fetched by the astronaut during the flight of the Shenzhou-7 Spaceship.

关键词： manned spaceflight exposure experiment mechanism unlock

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Isotopic feature and uranium dating of the volcanic rocks in the Okinawa Trough

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中国科学：地球科学英文版 2006年第4期49卷 375-383页

作者： HUANG Peng1,2. LI Anchun1, HU Ningjing2.3. FU Yongtao1& MA Zhibang4 1. Institute of Oceanology, chinese Academy of {2., Qingdao 2.6071, china 2. {3. School of the chinese Academy of {2., beijing 10003., china 3. Institute of Soil Science, chinese Academy of {2., Nanjing 2.0008, china 4. Institute of Geology and Geophysics, chinese Academy of {2., beijing 10002., china 1. Institute of Oceanology Chinese Academy of Sciences Qingdao 266071 China 2. graduate School of the chinese Academy of {2. Beijing 100039 China 3. Institute of Soil Science Chinese Academy of Sciences Nanjing 210008 China 4. Institute of Geology and Geophysics Chinese Academy of Sciences Beijing 100029 China

Volcanic rocks from the northern and middle Okinawa Trough were dated by ura- nium-series dating method. Differential fractions using magnetic procedure were designed to separate samples. New report on the ages and isotopic data of rocks in the northern trough (especially black pumice) was discussed. Based on the uranium dates and Sr-Nd isotopic ratio, magmatic evolution process of the Okinawa Trough was noted. Firstly, there have been wide silicic volcanic activities in the Okinawa Trough from late Pleistocene to present, and the volcanic rocks can be divided into three subgroups. Secondly, magma generally came from PREMA source area under the Okinawa Trough. Magmatic evolution in the northern trough was similar to the middle, but different to the south. Finally, volcanic activities indicated that opening of the southern Okinawa Trough did not happen due to the collision between Luson Arc and Eurasian Plate until the early Pleistocene.

关键词： Okinawa Trough, black pumice, uranium-series dating, Sr-Nd isotopic ratio, magmatic evolution.

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Effective solutions to a global 3. visual system in networking environments

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Science china Earth sciences 2005年第11期48卷 2032-2039页

作者： ZHANG Liqiang1,2. ZHANG Yan3. YANG Chongjun2. LIU Suhong1, REN Yingchao2. RUI Xiaoping2.& LIU Donglin2.1. State Key Laboratory of Remote Sensing sciences, School of Geography and Remote Sensing, {2. Normal University, {2. 100875,{3. 2. State Key Laboratory of Remote Sensing sciences, Institute of Remote Sensing Applications, chinese Academy of sciences, {2. 101001,{3. 3. Institute of Geographical sciences and Natural Resources Research, chinese Academy of sciences, {2. 101001,{3. 1. State Key Laboratory of Remote Sensing sciences School of Geography and Remote Sensing Beijing Normal University 100875 Beijing China 2. chinese Academy of sciences State Key Laboratory of Remote Sensing SciencesInstitute of Remote Sensing Applications 101001 Beijing China 3. Institute of Geographical sciences and Natural Resources Research Chinese Academy of Sciences 101001 Beijing China

The development of Web-based global 3. visual system has made progresses. However, there exist few mature and effective ways for managing, transmitting and visualizing massive spatial data. Based on the related work, the paper illustrates the ellipsoidal quadtree technique for rapid access multi-scale and multiple level geographical data, integrates the streaming with level-of-detail rendering method for transmitting the data on the network, and im-plements large-scale terrain surface simplification using M-band wavelet transforms and mul-tiresolution triangulations. We fulfil a web-based global terrain visual system using COM com-ponents on the basis of the above techniques. The system has a good prospect in the military simulation and city plans.

关键词： massive spatial data, streaming transmission, system architecture, M-band wavelet

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Crustal structure of Gondwana-and Yangtze-typed blocks:An example by wide-angle seismic profile from Menglian to Malong in western Yunnan

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Science china Earth sciences 2005年第11期48卷 1828-1836页

作者： ZHANG Zhongjie1, BAI Zhiming1, WANG Chunyong2. TENG Jiwen1, Lü Qingtian3. LI Jiliang1, SUN Shanxue1 & WANG Xinzheng1 1. Institute of Geology and Geophysics, chinese Academy of {2., beijing 10002.,{3. 2. Institute of Geophysics, chinese Seismological Bureau, beijing 100081,{3. 3. Institute of Deposition Resource, chinese Academy of Geological {2., beijing 10003.,{3. 1. Institute of Geology and Geophysics Chinese Academy of Sciences 100029 Beijing China 2. Institute of Geophysics Chinese Seismological Bureau 100081 Beijing China 3. Institute of Deposition Resource Chinese Academy of Geological Sciences 100037 Beijing China

The wide-angle seismic profile between Menglian and Malong crosses the Baoshan block (Gondwana-typed), and Simao and southwestern Yangtze blocks (Yangtze-typed). By in-terpreting the wide-angle seismic data, we obtained the seismic crust/upper mantle structure of P-wave velocities together with the seismic reflections of these three blocks, Changning- Menglian and Mojiang suture zones among the mentioned three blocks. Our interpreting results demonstrate that the P-wave crustal velocity of Simao block is slower than that of Baoshan and southwestern Yangtze block and the crustal thickness gradually thickens from the Baoshan block, Simao to southwestern Yangtze block. Crustal reflection patterns of these three blocks have dis-tinct differences too. For the Gondwana-typed blocks, seismic reflections in the upper crust are well developed while in middle-lower crust they are very weak. The crustal reflections in the Yangtze block are very well developed. The crustal reflection patterns in Simao and southwest-ern Yangtze blocks are distinguishable. The average thickness of the crust in the studied area is about 40 km. And we make some discussions on the crustal thickening model of the three blocks in western Yunnan and tectonic setting of seismic developing and interaction of Gondwana and Yangtze blocks.

关键词： Gondwana blocks,Yangtze blocks,wide-angle profile,crustal structure,tectonic setting

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Infrared Galaxies in the Nearby Universe

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chinese Journal of Astronomy and Astrophysics 2008年第6期8卷 643-652页

作者： Jian-Ling Wang 1 National Astronomical Observatories,chinese Academy of sciences,{2. 100012.{3. 2.graduate School of chinese Academy of sciences,{2. 100049,{3. National Astronomical Observatories Chinese Academy of Sciences Beijing 100012 China graduate School of chinese Academy of {2. Beijing 100049 China

We used the Sloan Digital Sky Survey （SDSS） Data Release 5 （DR5） to study the morphological properties of 113. nearby infrared （IR） galaxies, most of which are brighter than 15.9 mag in r-band. This sample was drawn from a cross-correlation of the Infra-Red Astronomical Satellite （IRAS） point source catalog redshift survey with DR5 at z ≤ 0.08. Based on this IR galaxy sample, we constructed five volume-limited sub-samples with IR luminosity ranging from 10^9.5 L⊙ to 10^12.⊙. By deriving the IR luminosity functions （LF） for different morphological types, we found that normal spiral galaxies are the dominant population below LIR ~ 8 ~ 10^10 L⊙; while the fraction of barred spiral galaxies increases with increasing IR luminosity and becomes dominant in spiral galaxies beyond LIR ≈ 5 × 10^10L⊙. As the IR luminosity decreases, the IR galaxies become more compact and have lower stellar masses. The analysis also shows that normal spiral galaxies give the dominant contribution to the total comoving IR energy density in the nearby universe, while, in contrast, the contribution from peculiar galaxies is only 3.%.

关键词： galaxies evolution galaxies interactions galaxies starburst infrared galaxies galaxies luminosity function

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H_2.O and H110α survey toward UCHII regions

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Research in Astronomy and Astrophysics 2011年第2期11卷 156-162页

作者： Xiao-Hong Han graduate University of chinese Academy of {2.,{3., china National Astronomical Observatories / Urumqi Observatory Chinese Academy of Sciences Urumqi 830011 China graduate University of chinese Academy of {2. Beijing 100049 China

We report results of the H2.O and H110α survey toward 2.1 UCHII regions using the Urumqi 2.m radio *** obtained 3. new H2.O detections,and H110α was simultaneously detected in eight of *** H110α was detected in another UCHII *** calculated kinematic distances of nine UCHII regions with the detected H110α and resolved the kinematic distance ambiguity for six of *** detection rate of H2.O of our observation was 13.2.,which is low compared with one of the other *** possible reason is that the sensitivity of our telescope is relatively low.

关键词： ISM: HII regions -- ISM: molecules -- radio lines: ISM

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