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A new DNA algorithm to solve graph coloring problem

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Progress in Natural Science:Materials International 2007年第6期17卷 733-738页

作者： Jiang Xingpeng1, Li Yin2. Meng Ya3.and Meng Dazhi2.1. National Laboratory of Pattern Recognition,institute of Automation, {2. academy of Sciences, {3. 100080, china 2. College of Applied Sciences, {3. University of Technology, {3. 10002., china 3. School of Science, {3. institute of Technology, {3. 100081, china) National Laboratory of Pattern Recognition Institute of Automation Chinese Academy of Sciences Beijing 100080 China College of Applied Sciences Beijing University of Technology Beijing 100022 China School of Science Beijing Institute of Technology Beijing 100081 China

Using a small quantity of DNA molecules and little experimental time to solve complex problems successfully is a goal of DNA computing. Some NP-hard problems have been solved by DNA computing with lower time complexity than conventional computing. However, this advantage often brings higher space complexity and needs a large number of DNA encoding molecules. One example is graph coloring problem. Current DNA algorithms need exponentially increasing DNA encoding strands with the growing of problem size. Here we propose a new DNA algorithm of graph coloring problem based on the proof of four-color theorem. This algorithm has good properties of needing a relatively small number of operations in polynomial time and needing a small number of DNA encoding molecules (we need only 6R DNA encoding molecules if the number of regions in a graph is R).

关键词： DNA computing NP-hard problem graph coloring problem.

Evaluation of Sustainable Land Management and Diagnosis of Obstacle at County Scale in Sichuan Basin:Taking Lezhi County as Example

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Wuhan University Journal of Natural Sciences 2006年第4期11卷 1046-1051页

作者： CHEN Guangjian 1, 2. 3., LIU Qing 1 1. Chengdu institute of Biology, {2. academy of Sciences, Chengdu 610041, Sichuan,{3. 2. Graduate University of {2. academy of Sciences, beijing 100049, china 3. academy of Land Reconnaissance and Layout of Sichuan Province , Chengdu 61003., Sichuan, china Chengdu institute of Biology Chinese Academy of Sciences Chengdu Sichuan China Graduate University of chinese academy of Sciences Beijing China academy of Land Reconnaissance and Layout of Sichuan Province Chengdu Sichuan China

This paper established sustainable land resources evaluating indicators fit for hilly area in Sichuan Basin, Southwest of china, and evaluated the case of sustainable land management of Lezhi County from 1990 to 2.01. The result showed that the land resource sustainable utilization ability in Lezhi County is belong to Second level （better sustainable）. Secondly, this paper diagnosed some years obstacles of sustainable land management of Lezhi County from base period to goal period and compared the obstacles factors in the indicators system. There were 16 indexes orderly become major affect factor to land sustainable utilization of Lezhi county in indicator system, of which there are 8 obstacles indexes exist both in 1990 and 2.01. The value of obstacles degree of five indicators exceeded 5 in 1990, but in 2.01, only two indicators＇ values were more than 5.

关键词： land resources sustainable land management assessment indicators diagnosis of obstacle

Representation of microscale ocean wavenumber spectrum correct to the second order

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Science china Earth Sciences 2005年第4期48卷 549-554页

作者： YUAN Yeli2.& HUA Feng1,2.3.1. institute of Oceanology, {2. academy of Sciences, Qingdao 2.6071,{3. 2. Key Laboratory of Marine Science and Numerical Modeling, State Oceanic Administration, Qingdao 2.6061,{3. 3. Graduate School of the {2. academy of Sciences, beijing 10003.,{3. 1. Key Laboratory of Marine Science and Numerical Modeling State Oceanic Administration 266061 Qingdao China 2. institute of Oceanology Chinese Academy of Sciences 266071 Qingdao China 3. Graduate School of the chinese {2. of Sciences 100039 Beijing China

In this paper, the analytical representations of four wave source functions in high-frequency spectrum range are given on the basis of ocean wave theory and dimensional analysis, and the perturbation method is used to solve the governing equations of ocean wave high-frequency spectrum on the basis of the temporally stationary and locally homogeneous scale relations of microscale wave. The microscale ocean wavenumber spectrum correct to the second order has an explicit structure, its first order part represents the equilibrium between dif- ferent source functions, and its second order part represents the contribution of microscale wave propagation.

关键词： temporally stationary and locally homogeneous, source function in high-frequency spectrum range, microscale ocean wavenumber spectrum.

Isotopic feature and uranium dating of the volcanic rocks in the Okinawa Trough

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中国科学：地球科学英文版 2006年第4期49卷 375-383页

作者： HUANG Peng1,2. LI Anchun1, HU Ningjing2.3. FU Yongtao1& MA Zhibang4 1. institute of Oceanology, {2. academy of Sciences, Qingdao 2.6071,{3. 2. Graduate School of the {2. academy of Sciences, beijing 10003.,{3. 3. institute of Soil Science, {2. academy of Sciences, Nanjing 2.0008,{3. 4. institute of Geology and Geophysics, {2. academy of Sciences, beijing 10002.,{3. 1. institute of Oceanology Chinese Academy of Sciences Qingdao 266071 China 2. Graduate School of the chinese academy of Sciences Beijing 100039 China 3. institute of Soil Science Chinese Academy of Sciences Nanjing 210008 China 4. institute of Geology and Geophysics Chinese Academy of Sciences Beijing 100029 China

Volcanic rocks from the northern and middle Okinawa Trough were dated by ura- nium-series dating method. Differential fractions using magnetic procedure were designed to separate samples. New report on the ages and isotopic data of rocks in the northern trough (especially black pumice) was discussed. Based on the uranium dates and Sr-Nd isotopic ratio, magmatic evolution process of the Okinawa Trough was noted. Firstly, there have been wide silicic volcanic activities in the Okinawa Trough from late Pleistocene to present, and the volcanic rocks can be divided into three subgroups. Secondly, magma generally came from PREMA source area under the Okinawa Trough. Magmatic evolution in the northern trough was similar to the middle, but different to the south. Finally, volcanic activities indicated that opening of the southern Okinawa Trough did not happen due to the collision between Luson Arc and Eurasian Plate until the early Pleistocene.

关键词： Okinawa Trough, black pumice, uranium-series dating, Sr-Nd isotopic ratio, magmatic evolution.

Strong decays of N~*(153.) in an extended chiral quark model

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Science china(Physics,Mechanics & Astronomy) 2009年第10期52卷 1452-1457页

作者： AN ChunSheng1,2.3.& ZOU BingSong1,2.3.1 {2. of High Energy Physics,chinese academy of Sciences,{3. 100049,china 2.Theoretical Physics Center for Science Facilities,chinese academy of Sciences,{3. 100049,china 3.Graduate University of chinese academy of Sciences,{3. 100049,china institute of High Energy Physics Chinese Academy of Sciences Beijing 100049 China Theoretical Physics Center for Science Facilities Chinese Academy of Sciences Beijing 100049 China Graduate University of chinese academy of Sciences Beijing 100049 China

The strong decays of the N*(153.) resonance are investigated in an extended chiral quark model by including the low-lying $ qqqq\bar q $ components in addition to the qqq component. The results show that these five-quark components in N*(153.) contribute significantly to the N*(153.) → Nπ and N*(153.) → Nη decays. The contributions to the Nη decay come from both the lowest energy and the next-tolowest energy five-quarks components, while the contributions to the Nπ decay come from only the latter one. Taking these contributions into account, the description for the strong decays of N*(153.) is improved, especially for the puzzling large ratio of the decays to Nη and Nπ.

关键词： N*(153.) strong decays five-quark components

Effective solutions to a global 3. visual system in networking environments

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Science china Earth Sciences 2005年第11期48卷 2032-2039页

作者： ZHANG Liqiang1,2. ZHANG Yan3. YANG Chongjun2. LIU Suhong1, REN Yingchao2. RUI Xiaoping2.& LIU Donglin2.1. State Key Laboratory of Remote Sensing Sciences, School of Geography and Remote Sensing, beijing Normal University, beijing 100875, china 2. State Key Laboratory of Remote Sensing Sciences, {3. of Remote Sensing Applications, chinese academy of Sciences, beijing 101001, china 3. {3. of Geographical Sciences and Natural resources Research, chinese academy of Sciences, beijing 101001, china 1. State Key Laboratory of Remote Sensing Sciences School of Geography and Remote Sensing Beijing Normal University 100875 Beijing China 2. chinese academy of Sciences State Key Laboratory of Remote Sensing SciencesInstitute of Remote Sensing Applications 101001 Beijing China 3. institute of Geographical Sciences and Natural {2.s Research Chinese Academy of Sciences 101001 Beijing China

The development of Web-based global 3. visual system has made progresses. However, there exist few mature and effective ways for managing, transmitting and visualizing massive spatial data. Based on the related work, the paper illustrates the ellipsoidal quadtree technique for rapid access multi-scale and multiple level geographical data, integrates the streaming with level-of-detail rendering method for transmitting the data on the network, and im-plements large-scale terrain surface simplification using M-band wavelet transforms and mul-tiresolution triangulations. We fulfil a web-based global terrain visual system using COM com-ponents on the basis of the above techniques. The system has a good prospect in the military simulation and city plans.

关键词： massive spatial data, streaming transmission, system architecture, M-band wavelet

Grain-size features of a Miocene loess-soil sequence at Qinan: Implications on its origin

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Science china Earth Sciences 2006年第7期49卷 731-738页

作者： QIAO Yansong1,3. GUO Zhengtang2.1, HAO Qingzhen1, YIN Qiuzhen1, YUAN Baoyin1 & LIU Tungsheng1 1. institute of Geology and Geophysics, {2. academy of Sciences, {3. 10002., china 2. institute of Earth Environment, {2. academy of Sciences, Xi’an 710075, china 3. institute of Geomechanics, {2. academy of Geological Sciences, {3. 100081, china 1. institute of Geology and Geophysics Chinese Academy of Sciences Beijing 100029 China 3. institute of Geomechanics Chinese Academy of Geological Sciences Beijing 100081 China 2. institute of Earth Environment Chinese Academy of Sciences Xi’an 710075 China

In this study, grain-size of 507 bulk samples from the QA-I Mioceneloess-soil sequence at Qinan were analyzed, and the grain-size features are compared with those oftypical Quaternary loess and soil samples, representative lacustrine and fluvial samples. Theresults indicate that the grain-size distribution pattern of the Miocene loess is essentiallysimilar to that of Quaternary loess, but greatly differs from the lacustrine and fluvial *** layers are regularly coarser than soil layers, indicating cyclical climate changes. Mediangrain-size along the 2.3.1 m sequence varies from 6 to 13.μm and the > 63.μm fraction representsonly 5.3. in maximum, 0.9% in average. Long-term grain-size variations are consistent with the loessaccumulation rate at Qinan and with the eolian mass accumulation rate in the North Pacific. Thesefeatures firmly indicate an eolian origin of the studied sequence, and also reveal a coeval changesbetween the long-term changes of eolian grain-size and continental aridity in the dust sourceregions.

关键词： Qinan, Miocene loess-soil sequence, grain-size, eolian origin.

Analysis of tandem repeats in the genome of chinese shrimp Fenneropenaeus chinensis

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chinese Science Bulletin 2005年第14期50卷 1462-1469页

作者： KONG Jie1 & GAO Huan2.3.1. Key Laboratory for Sustainable Utilization of Marine Fisheries Re- sources, Ministry of Agriculture, Yellow Sea Fisheris Research Insti- tute, chinese {2. of Fishery Sciences, Qingdao 2.6071, china 2. {3. of Oceanology, chinese {2. of Sciences, Qingdao 2.6071, china 3. The Graduate School of the chinese {2. of Sciences, beijing 10003., china Key Laboratory for Sustainable Utilization of Marine Fisheries resources Ministry of Agriculture Yellow Sea Fisheris Research Institute Chinese Academy of Fishery Sciences Qingdao China institute of Oceanology Chinese Academy of Sciences Qingdao China The Graduate School of the chinese academy of Sciences Beijing China

Through random sequencing, we found a total of 884000 base-pairs (bp) of random genomic sequences in the genome of chinese shrimp (Fenneropenaeus chinensis). Using bio-soft Tandem Repeat Finder (TRF) software, 2.59 tandem repeats were found, in which there were 1714 mi- crosatellites and 445 minisatellites, accounting for 79.4% and 2..6% of repeat sequences, respectively. The cumulative length of repeat sequences was found to be 116685 bp, ac- counting for 13.2. of the total DNA sequence; the cumula- tive length of microsatellites occupied 9.78% of the total DNA sequence, and that of minisatellites occupied 3.42.. In decreasing order, the 2. most abundant repeat sequence classes were as follows: AT (557), AC (471), AG (2.4), AAT (92., A (56), AAG (2.), ATC (2.), ATAG (2.), AGG (18), ACT (15), C (11), AAC (11), ACAT (11), CAGA (10), AGAA (9), AGGG (7), CAAA (7), CGCA (6), ATAA (6), AGAGAA (6). Dinucleotide repeats, not only in the aspect of the number, but also in cumulative length, were the preponderant repeat type. There were few classes and low copy numbers of repeat units of the pentanucleotide repeat type, which included only three classes: AGAGA, GAGGC and AAAGA. The classes and copy numbers of heptanucleotide, eleven-nucleotide and thirteen-nucleotide primer-number-composed repeats were distinctly less than that of repeat types beside them.

关键词：虾遗传特性遗传基因 DNA

Chronology of Holocene lacustrine sediments in Co Ngoin, central Tibetan Plateau

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Science china Earth Sciences 2006年第9期49卷 991-1001页

作者： WU Yanhong1, WANG Sumin1& HOU Xinhua1,3.1. Key Laboratory of Lake Sedimentation and Environment, Nanjing institute of Geography and Limnology, {2. academy of Sciences, Nanjing 2.0008,{3. 2. institute of Tibetan Plateau Research, {2. academy of Sciences, beijing 10085,{3. 3. Graduate University of {2. academy of Sciences, beijing 10003.,{3. 1. Key Laboratory of Lake Sedimentation and Environment Nanjing Institute of Geography and Limnology Chinese Academy of Sciences Nanjing 210008 China 2. institute of Tibetan Plateau Research Chinese Academy of Sciences Beijing 10085 China 3. Graduate University of chinese {2. of Sciences Beijing 100039 China

Chronology is the basis for using lacustrine sediments to reconstruct the history of en-vironmental change. Radioactive-nuclides such as 14C, 2.0Pb and 13.Cs dating are mainly used to establish the chronology for recent several ten thousand years. Because of being mixed with “dead carbon”, the measured 14C age is always older than the actual age which is recognized as “reservoir effect”. Cs is a kind of active metal element, and easy to migrate vertically in the sediment that leads to the error of the time marker. 2.0Pb dating should make sure to select CIC model or CRS model. On the Tibetan Plateau, most of the lakes are alkaline closed lake where Cs is more moveable in the sediment and the reservoir effect caused by “dead carbon” on 14C dating is stronger. Based on the analysis on results of 14C, 2.0Pb and 13.Cs of the lacustrine sediments from Co Ngoin, central Tibetan Plateau, we use the simple regression method to re-calculate the 14C calendar ages, and establish the time sequence for cores CE-1 and CE-2.with result of 2.0Pb CRS model for the upper 3. cm and re-calculated 14C calendar age for sediments bellow 3. cm. Since 1400 cal. a BP, sedimentation inter-rupted for more than 1000 years. According to this time sequence, variations of environmental proxies confidently reflect the major climatic events in Holocene.

关键词： 14C, 2.0Pb and 13.Cs, chronology, lacustrine sediments, climatic event, Co Ngoin, central Tibetan Plateau.