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Identification of novel SINEs from Cyprinidae and their evolutionary significance

Progress in Natural Science:Materials International 2007年第3期17卷 270-279页

作者： HAN Yawei, HE Slumping and CHEN Yiyu ( Institute of Hydrobiology, chinese academy of {2., Wuhan 430072. china. graduate school, chinese academy of {2., beijing 100039, china) Institute of Hydrobiology Chinese Academy of Sciences Wuhan 430072 China graduate school Chinese Academy of Sciences Beijing 100039 China

Short interspersed nuclear elements (SINEs) are widespread among eukaryotic genomes. They are repetitive DNA sequences that have been amplified by retrotransposition. In this study, a class of SINEs were isolated from the Opsariichthys bidens genome, and named Opsar. Sequence analysis confirmed that Opsar is a new class of typical SINEs derived from tRNA molecules. With the tRNA-derived region of Opsar and through BLASTN search, we further identified Zb-SINEs from the zebrafish genome, which includes two groups: Zb-SINE-A and Zb-SINE-B. The Zb-SINE-A. group comprises subfamilies of -Al--A5, and the Zb-SINE-B group is a dimer of the tRNA -derived region and shares a similar dimeric composition to Alu. Zb-SINEs are composed of three distinct regions: a 5’ end tRNA-derived region, a tRNA-unrelated region and a 3’ end AT-rich region. The flanking regions are AT rich. The average length of Zb-SINEs elements is about 340 bp. Zb-SINEs account for as much as 0.1 % of the whole zebrafish genome. About 70% of the Zb-SINEs are on chromosomes 11, 18, and 19. These Zb-SINEs were characterized by PCR and dot hybridization. The distribution pattern of Zb-SINEs in genome strongly supports the master genes model. The tRNA-derived regions of Opsar and Zb-SINEs were compared with the tRNAAla gene, and they showed 76% similarity, indicating that Opsar and Zb-SINEs originated from an inactive tRNA sequence or a tRNA -like sequence. In view of the evolutionary status of zebrafish in the Cyprinidae, we deduced that Zb-SINEs were a very old class of interspersed sequences.

关键词： short interspersed nuclear elements (SINEs) master gene model Opsar Zb-SINEs and Cyprinidae.

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Teleconnection between the Indian summer monsoon onset and the Meiyu over the Yangtze River Valley

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Science china Earth sciences 2008年第7期51卷 1021-1035页

作者： LIU YunYun1,2.3 & DING YiHui2.1 chinese academy of Meteorological {2., beijing 100081, china 2.National Climate Center, beijing 100081, china 3 graduate University of chinese academy of {2., beijing 100049, china chinese academy of Meteorological {2. Beijing China National Climate Center Beijing China graduate University of chinese {2. of sciences Beijing China

Based on the Indian and chinese precipitation data and the NCEP-NCAR reanalysis circulation data, the relationship between the Indian summer monsoon (ISM) onset and the Meiyu over the Yangtze River Valley has been discussed by the methods of correlation analysis and composite analysis. The results show that the date of ISM onset over Kerala in the southwestern coast of the Indian Peninsula is about two weeks earlier than the beginning of the Meiyu over the Yangtze River Valley. After the outbreak of ISM, the teleconnection mode sets up from the western coast of India via the Bay of Bengal (BOB) to the Yangtze River Valley and southern Japan. It is different both in time and space from the telecon- nection mode which is from the northwest of India via the Tibetan Plateau to northern china. The for- mer mode is defined as the "south" teleconnection of the Asian summer monsoon, forming in the pe- riod of ISM onset; while the latter mode is called the "north" teleconnection, mainly occurring in the Asian monsoon culminant period. During the process of the "south" teleconnection’s formation, the Asian monsoon circulation has experienced a series of important changes: ISM onset, the northward movement of the south Asia high (SAH), the onset vortex occurrence, the eastward extension of the stronger tropical westerly belt, and the northeastward jump of the western Pacific subtropical high (WPSH), etc. Consequently, since ISM sets up over Kerala, the whole Asian continent is covered by the upper SAH after about two weeks, while in the mid- and lower troposphere, a strong wind belt forms from the Arabian Sea via the southern India, BOB and the South china Sea (SCS), then along the western flank of WPSH, to the Yangtze River Valley and southern Japan. With the northward moving of the subtropical jet streams, the upper westerly jet stream and the low level jet have been coupled ver- tically over east Asia, while the Yangtze River Valley happens to locate in the ascending motion

关键词： Indian summer monsoon (ISM) the Meiyu over the Yangtze River Valley teleconnection mode

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Compositions of heavy minerals in Northeastern china sandlands and provenance analysis

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Science china Earth sciences 2007年第11期50卷 1715-1723页

作者： XIE Jing1,2.& DING ZhongLi1 1 Institute of Geology and Geophysics, chinese academy of {2., beijing 10002., china 2.graduate University of chinese academy of {2., beijing 100049, china Institute of Geology and Geophysics Chinese Academy of Sciences Beijing China graduate University of chinese {2. of sciences Beijing China

Sand samples deposited since the Last Glacial Maximum (LGM) from the Hulun Buir, Horqin and Otin-dag sandlands were measured for their assemblages of heavy minerals and chemical compositions of detrital garnets and tourmalines. Heavy mineral assemblages of these three sandlands consist mainly of garnet, ilmenite, epidote and minor amphibole and magnetite. Garnets consist mainly of high Mg type-A ones (58% on average), and minor type-B ones. Toumalines are mainly composed of Mg-rich and minor Fe-rich ones. Compared with those of central-southern Mongolia and central Tarim, these three sandlands are derived from the Phanerozoic rocks of the Central Asian Orogenic Belt and the Archean and Paleoprotorozoic basement rocks of the North china Craton. Our results provide direct evidence that the present-day sands may be reworked from LGM ones. Differences of heavy mineral composi-tions occur between the samples of the three sandlands and Taklimakan Desert, indicating that the material of the western arid regions contributes little to the eastern sandlands.

关键词： heavy minerals,provenance,Northeastern china,garnet,tourmaline

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Variation properties of ionospheric eclipse factor and ionospheric influence factor

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Progress in Natural Science:Materials International 2005年第6期15卷 573-576页

作者： ZHAO Chunmei 1,2.*, YUAN Yunbin1, OU Jikun1 and CHEN Jinping3(1. Institute of Geodesy and Geophysics, chinese academy of {2., Wuhan 430077, china 2. graduate school of chinese academy of {2., beijing 100039, china 3. Department of Precision Instrument and Mechanology, Tsinghua University, beijing 100084, china) Institute of Geodesy and Geophysics Chinese Academy of Sciences Wuhan 430077 China graduate school Chinese Academy of Sciences Beijing 100039 China Department of Precision Instrument and Mechanology Tsinghua University Beijing 100084 China

The concepts and calculation methods of ionospheric eclipse factor (IEF) and ionospheric influence factor (IFF) are further illustrated. The temporal and spacial variation properties of IEF and IFF are studied, which shows that the properties are influenced by the geographic position and season. The possibility of improving the precision of using GPS data to determine ionospheric delay based on the above variation properties is also analysed.

关键词： GPS Ionospheric eclipse factor Ionospheric influence factor

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Mass Spectrometric Evidence of Heparin Disaccharides for the Catalytic Characterization of A Novel Endolytic Heparinase

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Acta Biochimica et Biophysica Sinica 2004年第12期36卷 840-844页

作者： Yapeng CHAO1,3, Shaoxiang XIONG2. Xiulan CHENG1, and Shijun QIAN1* 1Institute of Microbiology, chinese academy of {2., beijing 100080, china 2.enter of Mass Spectrometry, Institute of Chemistry, chinese academy of {2., beijing 100080, china 3graduate school of the chinese academy of {2., beijing 100039, china Institute of Microbiology Chinese Academy of SciencesBeijing 100080 China graduate school of the {2. academy of sciencesbeijing 100039 China Center of Mass Spectrometry Institute of Chemistry Chinese Academy of SciencesBeijing 100080 China

Heparinase from different sources can eliminate heparin or/and heparan sulfate into various low-molecular weight heparins with different characteristics. Porcine intestinal mucosa heparin was de- graded into a series of oligosaccharides by a novel heparinase from the species Sphingobacterium. Disaccha- ride components from the digests were separated and purified by ultrafiltration and HPLC. Five major peaks appeared as three types according to their retention time. The mass spectrometry of peak I mainly gave the non-sulfated disaccharide with the mass of 379 Da. Peak II and III were indicated as two major monosulfated disaccharides with molecular mass of 417 and 459 Da respectively. Moreover, the peak III represented an N- acetyl disaccharide. Both peak IV and V showed the same mass of 496 Da, hinting that they were disulfate- substituted disaccharides. No trisulfate-substituted disaccharides were detected in the mixture of the heparin digest though they were abundant in the heparin structure. The results revealed that the heparinase might specifically cut the sites with low sulfated domain in heparin.

关键词： electrospray ionization-mass spectrometry heparin disaccharides heparinase high perfor- mance liquid chromatography Sphingobacterium sp.

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Novel Tumor-associated Antigen of Hepatocellular Carcinoma Defined by Monoclonal Antibody E4-65

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Acta Biochimica et Biophysica Sinica 2007年第5期39卷 359-365页

作者： Ke ZOU~(1,2., Jihang JU~(1,2., and Hong XIE~~(1*)1 Institute of Biochemist13, and Cell Biology, Shanghai Institutes for Biological sciences, chinese {2. of sciences, Shanghai 2.0031, china. 2.graduate school of the chinese {2. of sciences beijing 100049, china Institute of Biochemistry and Cell Biology Shanghai Institutes for Biological Sciences Chinese Academy of SciencesShanghai 200031 China graduate school of the {2. academy of sciencesbeijing 100049 China

A monoclonal antibody, E4-65, produced by immunizing mice with SMMC-772. cells, a human hepatocellular carcinoma (HCC) cell line, was used to identify and characterize an unreported HCC-associated antigen. Indirect immunofluorescence studies showed that E4-65 antibody reacted with five out of eight HCC cell lines, but not with 10 non-HCC tumor cell lines or a normal liver cell line. Using immunohistochemical examination, E4-65 antigen was detected on the cell membranes and in the cytoplasm of human liver tumor tissues, but was not found in most other tumors, or normal adult or fetal tissues, except for a weakly positive reaction in tissues of the digestive system. Western blot analysis showed that E4-65 antibody bound to a 45 kDa protein in the human HCC cell line and tissue lysates. Enzyme treatment and lectin blotting did not detect the carbohydrate chain in E4-65 antigen. This HCC-associated protein represents a potentially useful target for diagnoses and immunotherapy of human HCC.

关键词： hepatocellular carcinoma immunohistochemistry monoclonal antibody neoplasm antigen

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Assessing the Carrying Capacity of Tourist Resorts: An Application of Tourists’ Spatial Behavior Simulator Based on GIS and Multi-Agent System

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Wuhan University Journal of Natural sciences 2005年第4期10卷 779-784页

作者： ZHANG Ren-jun 1,2.1. Institute of Mountain Hazards and Environment, chinese academy of {2., Chengdu 610041, Sichuan, china 2. graduated school of the chinese academy of {2., beijing 100039, china Institute of Mountain Hazards and Environment Chinese Academy of Sciences Chengdu Sichuan China graduated school of the {2. academy of sciences Beijing China

Based on the study of visitors' individual spatial behaviors, a tourists'spatial behavior simulator (TSBS) to assess the carrying capacity of tourist resorts was developed,TSBS employs GIS (Geographic Information System) to manage the spatial data,and Multi-Agent systemto simulate the actions of individual visitors. By utilizing TSBS, visitors' travel patterns such aslocation, cost, and state can be analyzed and predicted. Based on this analysis and prediction, themodel of assessing the carrying capacity of resorts is built. Our results show that TSBS will be aneffective tool to accurately assess the carrying capacity of tourist resorts.

关键词： tourist resort carrying capacity TSBS GIS Multi-Agent simulator

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Nonlinear interactions between gravity waves and background winds

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Progress in Natural Science:Materials International 2007年第6期17卷 639-644页

作者： Liu Xiao1,2.and Xu Jiyao1(1. State Key Laboratory for Space Weather, Center for Space Science and Applied Research, chinese academy of {2., beijing 100080, china 2. graduate University of chinese academy of {2., beijing 100039, china) State Key Laboratory for Space Weather Chinese Academy of Sciences Beijing 100080 China Center for Space Science and Applied Research Chinese Academy of Sciences Beijing 100080 China graduate University Chinese Academy of Sciences Beijing 100039 China

Using the nonlinear propagating gravity waves (GW) model in the two-dimensional compressible atmosphere and the linear GW theory, the process of GW propagation in different background winds, e.g. the direction of the background wind is opposite to (dead wind) or the same as (tail wind) the direction of the horizontal phase velocity of GW, is studied. The results show that the dead wind prolongs the vertical wavelength and accelerates GW propagation. Therefore, GW propagates up to a higher height becomes instable in a short time and eventually induces an inverse jet flow. Then, the vertical wavelength is becoming short due to the nonlinear interactions between GW and the inverse jet flow. The vertical wavelength and group velocity decrease after GW propagates into the tail wind. The initial instable time is delayed. Although most of GW is trapped in the instable region, some of GW propagates above the instable region. Compared with GW propagation in the tail wind, the nonlinear interactions between GW and the dead wind are also strong. In contrast, the linear GW theory predicts that GW can propagate freely in the dead wind. The vertical wavelength simulated by the nonlinear numerical model is different from that predicted by the linear theory greatly after GW propagates into the dead wind.

关键词： gravity waves background winds vertical group velocity vertical wavelength nonlinear interactions.

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Improvement of different source function expressions in SWAN model for the Bohai Sea

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Progress in Natural Science:Materials International 2005年第8期15卷 720-724页

作者： YIN Baoshu1*, YANG Dezhou1, SHA Rina 1,2.and CHENG Minghua1(1. Institute of Oceanology, chinese academy of {2., Qingdao 2.6071, china 2. graduate school of the chinese academy of sciences, beijing 100039, china) Institute of Oceanology Chinese Academy of Sciences Qingdao 266071 China graduate school Chinese Academy of Sciences Beijing 100039 China

The simulating wave nearshore （SWAN） wave model has been widely used in coastal areas, lakes and estuaries. However, we found a poor agreement between modeling results and measurements in analyzing the chosen four typical cases when we used the default parameters of the source function formulas of the SWAN to make wave simulation for the Bohai Sea. Also, it was found that at the same wind process the simulated results of two wind generation expressions （Komen, Janssen） demonstrated a large difference. Further study showed that the proportionality coefficient α in linear growth term of wave growth source function plays an unperceived role in the process of wave development. Based on experiments and analysis, we thought that the coefficient α should change rather than be a constant. Therefore, the coefficient α changing with the variation of friction velocity U*was introduced into the linear growth term of wave growth source function. Four weather processes were adopted to validate the improvement in the linear growth term. The results from the improved coefficient α agree much better with the measurements than those from the default constant coefficient α. Furthermore, the large differences of results between Komen wind generation expression and Janssen wind generation expression were eliminated. We also experimented with the four weather processes to test the new white-capping mechanisms based on the cumulative steepness method. It was found that the parameters of the new white-capping mechanisms are not suitable for the Bohai Sea, but Alkyon's white-capping mechanisms can be applicable to the Bohai Sea after amendments, demonstrating that this improvement of parameter α can improve the simulated results of the Bohai Sea.

关键词： waves SWAN model wave growth source function new proportionality coefficient formula.

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Isolation and Characterization of Photosystem Ⅱ of Porphyra yezoensis Ueda

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Acta Biochimica et Biophysica Sinica 2004年第11期36卷 780-785页

作者： Zheng-Quan GAO, Guang-Ce WANG, and Cheng-Kui TSENGKey Laboratory of Experimental Marine Biology, Institute of Oceanology, the chinese academy of {2., Qingdao 2.6071, china graduate school, the chinese academy of {2., beijing 100039, china Key Laboratory of Experimental Marine Biology Institute of Oceanology the Chinese Academy of SciencesQingdao 266071 China graduate school the Chinese Academy of SciencesBeijing 100039 China

The thylakoid membranes were isolated and purified from gametophyte of Porphyra yezoensis Ueda (P. yezoensis) by sucrose density gradient ultracentrifugation. After P. yezoensis gametophyte thylakoid membranes were so... 详细信息

关键词： red algae Porphyra yezoensis Ueda photosystem Ⅱ polypeptide composition extrinsic protein

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