The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening
作者机构：Key Laboratory of Vegetable Postharvest ProcessingMinistry of AgricultureBeijing Key Laboratory of Fruits and Vegetable Storage and ProcessingKey Laboratory of Biology and Genetic Improvement of Horticultural Crops(North China)of Ministry of AgricultureKey Laboratory of Urban Agriculture(North)of Ministry of AgricultureThe Collaborative Innovation Center of Cucurbit CropsBeijing Vegetable Research CenterBeijing Academy of Agriculture and Forestry SciencesBeijing 100097China College of Food Science and TechnologyHebei Agricultural UniversityBaoding 071001China Beijing Advanced Innovation Center for Food Nutrition and Human HealthBeijing Technology and Business UniversityBeijing 100048China Department of HorticultureZhejiang UniversityHangzhou 310058China Biomarker Technologies CorporationBeijing 101300China Boyce Thompson Institute for Plant ResearchCornell UniversityIthacaNY 14853USA U.S.Department of Agriculture-Agricultural Research ServiceRobert W.Holley Center for Agriculture and HealthIthacaNY 14853USA School of BiosciencesUniversity of NottinghamSutton Bonington CampusLoughboroughLeicestershire LE125RDUK
出 版 物：《Horticulture Research》 (园艺研究（英文）)
年 卷 期：2020年第7卷第1期
页 面：204-218页
核心收录：
学科分类：09[农学] 0902[农学-园艺学] 090202[农学-蔬菜学]
基 金：supported by grants from the Beijing Municipal Science and Technology Commission(Z191100008619004 and Z191100004019010) the Key Project of“Science and Technology Boost the Economy 2020,”the Special Innovation Ability Construction Fund of the Beijing Academy of Agricultural and Forestry Sciences(20180705 and 20200427) the China Agriculture Research System Project(CARS-23) the Collaborative Innovation Center of Beijing Academy of Agricultural and Forestry Sciences(201915) the Young Investigator Fund of the Beijing Academy of Agricultural and Forestry Sciences(202016) the National Natural Science Foundation of China(31772022) the Natural Science Foundation of Beijing(6182016) USDA National Institute of Food and Agriculture Specialty Crop Research Initiative(2015-51181-24285)
摘 要：Snake gourd(Trichosanthes anguina L.),which belongs to the Cucurbitaceae family,is a popular ornamental and food crop species with medicinal value and is grown in many parts of the *** progress has been made in its genetic improvement,the organization,composition,and evolution of the snake gourd genome remain largely ***,we report a high-quality genome assembly for snake gourd,comprising 202 contigs,with a total size of 919.8 Mb and an N50 size of 20.1 *** findings indicate that snake gourd has one of the largest genomes of Cucurbitaceae species sequenced to *** snake gourd genome assembly harbors 22,874 protein-coding genes and 80.0%of the genome consists of repetitive *** analysis reveals that snake gourd is closely related to sponge gourd but diverged from their common ancestor~33–47 million years *** genome sequence reported here serves as a valuable resource for snake gourd genetic research and comparative genomic studies in Cucurbitaceae and other plant *** addition,fruit transcriptome analysis reveals the candidate genes related to quality traits during snake gourd fruit development and provides a basis for future research on snake gourd fruit development and ripening at the transcript level.
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