Understanding divergent domestication traits from the whole-genome sequencing of swamp-and river-buffalo populations

作     者：Xier Luo Yu Zhou Bing Zhang Yi Zhang Xiaobo Wang Tong Feng Zhipeng Li Kuiqing Cui Zhiqiang Wang Chan Luo Hui Li Yanfei Deng Fenghua Lu Jianlin Han Yongwang Miao Huaming Mao Xiaoyan Yi Cheng Ai Shigang Wu Alun Li Zhichao Wu Zijun Zhuo Do Da Giang Bikash Mitra Mohammad Farhad Vahidi Shahid Mansoor Sahar Ahmed Al-Bayatti Eka Meutia Sari Neena Amatya Gorkhali Sigit Prastowo Laiba Shafique Guoyou Ye Qian Qian Baoshan Chen Deshun Shi Jue Ruan Qingyou Liu Xier Luo;Yu Zhou;Bing Zhang;Yi Zhang;Xiaobo Wang;Tong Feng;Zhipeng Li;Kuiqing Cui;Zhiqiang Wang;Chan Luo;Hui Li;Yanfei Deng;Fenghua Lu;Jianlin Han;Yongwang Miao;Huaming Mao;Xiaoyan Yi;Cheng Ai;Shigang WU;Alun Li;Zhichao WU;Zijun Zhuo;Do Da Giang;Bikash Mitra;Mohammad Farhad Vahidi;Shahid Mansoor;Sahar Ahmed Al-Bayatti;Eka Meutia Sari;Neena Amatya Gorkhali;Sigit Prastowo;Laiba Shafique;Guoyou Ye;Qian Qian;Baoshan Chen;Deshun Shi;Jue Ruan;Qingyou Liu

作者机构：Animal Biotechnology Department Agricultural Biotechnology Research Institute of Iran-North Region  11. National Institute for Biotechnology and Genetic Engineering  12. Animal Genetic Sources DepartmentDirectorate of Animal Resources Ministry of Agriculture  13. Department of Animal Science Faculty of Agriculture Syiah Kuala University  14. Animal Breeding DivisionNational Animal Science Research Institute Nepal Agriculture Research Council  15. Animal Science Department Universitas Sebelas Maret  16. International Rice Research Institute State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources Guangxi University CAS Key Laboratory of Genome Sciences and Information Beijing Institute of Genomics Chinese Academy of Sciences National Engineering Laboratory for Animal Breeding Key Laboratory of Animal Genetics Breeding and Reproduction of Ministry of Agriculture and Rural AffairsCollege of Animal Science and Technology China Agricultural University Guangdong Laboratory for Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences CAAS-ILRI Joint Laboratory on Livestock and Forage Genetic ResourcesInstitute of Animal ScienceChinese Academy of Agricultural Sciences International Livestock Research Institute Faculty of Animal Science and Technology Yunnan Agricultural University Bacgiang Agriculture and Forestry University Cellular Immunology Lab Department of Zoology University of North Bengal 

出 版 物：《National Science Review》 (国家科学评论(英文版))

年 卷 期：2020年第7卷第3期

页      面：686-701页

核心收录：

学科分类：0905[农学-畜牧学] 09[农学] 

基　　金：partially supported by the State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources was supported by the National Natural Science Foundation of China (31860638 31822029and 31561143010) the Agricultural Science and Technology Innovation Program Guangxi NaturalScience Foundation (AB16380042) grants from the State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources (SKLCUSA-a201701,SKLCUSA-a201702) Guangxi Department of Science and Technology (16–380-02) 

主　　题：Bubalus bubalis genome buffalo domestication re-sequencing traits 

摘      要：Domesticated buffaloes have been integral to rice-paddy agro-ecosystems for millennia, yet relatively little is known about the buffalo genomics. Here, we sequenced and assembled reference genomes for both swamp and river buffaloes and we re-sequenced 230 individuals(132 swamp buffaloes and 98 river buffaloes)sampled from across Asia and Europe. Beyond the many actionable insights that our study revealed about the domestication, basic physiology and breeding of buffalo, we made the striking discovery that the divergent domestication traits between swamp and river buffaloes can be explained with recent selections of genes on social behavior, digestion metabolism, strengths and milk production.