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BiDMAP - A Biological Data Management and Analysis Platform

BiDMAP - A Biological Data Management and Analysis Platform

作     者:GAO Ge, YU Peng, LIU Di, HE Kuan , WU Xin , LUO Jingchu (Centre of Bioinformatics, Peking University, Beijing 100871,China, luojc @ ***) 

作者机构:Centre of Bioinformatics Peking University Beijing 100871China luojc *** 

出 版 物:《计算机工程》 (Computer Engineering)

年 卷 期:2002年第28卷第S1期

页      面:145-153页

核心收录:

学科分类:081203[工学-计算机应用技术] 08[工学] 0835[工学-软件工程] 0812[工学-计算机科学与技术(可授工学、理学学位)] 

主  题:ORDBMS Biological data BiDMAP 

摘      要:With the rapid development of biotechnology, more and more genomic and associated functional data are available. Itis necessary and possible for biologists and bioinformaticians to integrate various databases in order to mine biological ***, the complexity of huge amount of biological data and their complicated structure need an advanced management systemwhich can store and manage data efficiently, and provide subject-oriented analysis tools for further study. BiDMAP is a platform designed to meet these needs. The core of BiDMAP is based on an Object Relational Database Management System (ORDBMS) which makes it possible not only to store and manage biological data but also to implement analysis tools on a single platform. Thegoal of BiDMAP is to integrate different datasets on specific subjects into one platform and provides a unified, easy-to-learn, easy-to-use interface to access those data. Complicated data structures are viewed as objects, stored in the database and manipulated via standard SQL. BiDMAP presents an intuitive approach for biologists with little computational skills and leaves the flexibility for further development. This paper gives an overview of the design and implementation of BiDMAP and gives a simple analysis example - finding interleukin candidates with implemented analysis tool of pattern scan.

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