Genome resequencing reveals the evolutionary history of garlic reproduction traits

作     者：Haiping Wang Einat Shemesh-Mayer Jiangjiang Zhang Song Gao Zheng Zeng Zemao Yang Xueyu Zhang Huixia Jia Yanzhou Wang Jiangping Song Xiaohui Zhang Wenlong Yang Qiaoyun He Amir Sherman Lin Li Rina Kamenetsky Touming Liu Haiping Wang;Einat Shemesh-Mayer;Jiangjiang Zhang;Song Gao;Zheng Zeng;Zemao Yang;Xueyu Zhang;Huixia Jia;Yanzhou Wang;Jiangping Song;Xiaohui Zhang;Wenlong Yang;Qiaoyun He;Amir Sherman;Lin Li;Rina Kamenetsky;Touming Liu

作者机构：State Key Laboratory of Vegetable BiobreedingInstitute of Vegetables and FlowersChinese Academy of Agricultural SciencesBeijingChina Institute of Plant SciencesAgricultural Research Organization-The Volcani InstituteRishon LeZionIsrael Institute of Bast Fiber CropsChinese Academy of Agricultural SciencesChangshaChina College of Horticulture and Landscape ArchitectureYangzhou UniversityYangzhouChina Industrial Research Institute of garlic(IBFC-Jinxiang)JinxiangChina College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina 

出 版 物：《Horticulture Research》 (园艺研究（英文）)

年 卷 期：2023年第10卷第11期

页      面：208-221页

核心收录：

学科分类：09[农学] 0902[农学-园艺学] 090202[农学-蔬菜学] 

基　　金：supported by grants from the National Natural Science Foundation of China(31872946,32172566 to H.W.,32372689 to T.L.) the Scientific Research Foundation of Yangzhou University(5018/137012867 to T.L.) the Shandong Provincial Key Research and Development Program(2023CXPT045 to T.L.) the China Agriculture Research System of MOF and MARA(CARS-24-01 to H.W.) 

主　　题：traits evolutionary signature 

摘      要：The propagation of cultivated garlic relies on vegetative cloves,thus flowers become non-essential for reproduction in this species,driving the evolution of reproductive feature-derived *** obtain insights into the evolutionary alteration of reproductive traits in the clonally propagated garlic,the evolutionary histories of two main reproduction-related traits,bolting and flower differentiation,were explored by genome analyses using 134 accessions displaying wide diversity in these two *** identified 272.8 million variations in the garlic genome,198.0million of which represent novel *** analysis identified five garlic groups that have evolved into two *** expression,single-cell transcriptome sequencing,and genome-wide trait association analyses have identified numerous candidates that correlate with reproductive transition and flower development,some of which display distinct selection *** forces acting on the B-box zinc finger protein-encoding Asa2G00291.1,the global transcription factor group E protein-encoding Asa5G01527.1,and VERNALIZATION INSENSITIVE 3-like Asa3G03399.1 appear to be representative of the evolution of garlic *** of novel genomic variations and trait-related candidates represent valuable resources for biological studies of *** selective signatures from genes associated with the two chosen reproductive traits provide important insights into the evolutionary history of reproduction in this clonally propagated crop.