FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles
作者机构：Institute of Ecology and Earth SciencesUniversity of Tartu14A Ravila50411 TartuEstonia Natural History MuseumUniversity of Tartu46 Vanemuise Str51003 TartuEstonia Gothenburg Global Biodiversity CentreBox 46140530 GothenburgSweden Department of Biological and Environmental SciencesUniversity of GothenburgGothenburgSweden Department of Soil and EnvironmentSwedish University of Agricultural SciencesBox 701475007 UppsalaSweden Department of Forest Mycology and Plant PathologySwedish University of Agricultural SciencesBox 702675007 UppsalaSweden Section for Genetics and Evolutionary Biology(EvoGene)Department of BiosciencesUniversity of OsloP.O.Box 1066BlindernNO-0316 OsloNorway University of Hawaiʻi at Mānoa3190 Maile WaySt.John 102HonoluluHIUSA Department of BiologyUniversity of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark Purdue University NorthwestWestvilleIN 46391USA Institute of MicrobiologyCzech Academy of SciencesVidenska 108314220 Praha 4Czech Republic GLOBE InstituteUniversity of CopenhagenØster Farimagsgade 5KH7.2.321353 CopenhagenDenmark Dipartimento di Scienze della Vita e Biologia dei SistemiUniversitàdi TorinoViale Mattioli 2510125 TorinoItaly Department of Organismic and Evolutionary Biology and Farlow Library and HerbariumHarvard University22 Divinity AveCambridgeMA 02138USA Blaihofstr.4272074 TübingenGermany SYNLAB EstoniaVeerenni 53aTallinn 11313Estonia Escuela de Tecnología MédicaUniversidad Santo TomásLos Carreras 753OsornoChile Centro de Genómica y BioinformáticaUniversidad MayorCamino La Pirámide 5750HuechurabaSantiagoChile Norwegian Institute for Nature Research(NINA)Sognsveien 680855 OsloNorway School of Life Science and TechnologyUniversity of Electronic Science and Technology of ChinaChengdu 611731People’s Republic of China Evolutionary BiologyFaculty of BiologyBiological and Chemical Research CentreUniversity of Warsawul.Zwirki i Wigury 10102-089 WarsawPoland Department of BotanySwedish Museum of Natural HistoryP.O.Box 5000710405 StockholmSweden Gothenburg Global Biodiversity CentreP.O.Box 46140530 GothenburgSweden Center of Excellence in Fungal ResearchMae Fah Luang UniversityChiang Rai 57100Thailand Westerdijk Fungal Biodiversity InstituteUtrechtThe Netherlands Department of Plant PathologyUniversity of FloridaGainesvilleFLUSA Plant Health and Environment LaboratoryMinistry for Primary IndustriesAuckland 1140New Zealand Center for Yunnan Plateau Biological Resources Protection and UtilisationQujing Normal UniversityQujing 655011YunnanChina Instituto Federal de EducaçãoCiência e Tecnologia de São Paulo(IFSP)Câmpus São PauloRua Pedro Vicente 625CanindéSão PauloSP 01109-010Brazil Instituto de BotânicaNúcleo de Pesquisa em MicologiaAv.Miguél Stefano 3687Água FundaSão PauloSP 04301-012Brazil Institute of Forestry and Rural EngineeringEstonian University of Life SciencesFr.R.Kreutzwaldi 551006 TartuEstonia Departamento de MicologiaUniversidade Federal de PernambucoAvenida da EngenhariaS/N-Cidade Universitária50740-600 RecifePEBrazil Department of Biology&Globe InstituteUniversity of CopenhagenUniversitetsparken 152100 CopenhagenØDenmark ARS Research Participation ProgramOak Ridge Institute for Science and EducationOak RidgeTN 37830USA All-Russian Institute of Plant ProtectionPodbelskogo 3 PushkinSt Petersburg 196608Russia Department of BiologyUniversidad del RosarioCarrera 24#63C-69BogotaDC 111221Colombia Ciências BiológicasUniversidade Federal Rural da AmazôniaTomé-AçuRodovia PA-451Km 0368.680-000Bairro Açaizal 68.680-000Brazil Instituto de BiologíaUniversidad Nacional Autónoma de MéxicoMexico CityMexico Institute of BiologicalEnvironmental and Rural SciencesAberystwyth UniversityWalesUK Research Group MycologyDepartment of BiologyGhent UniversityLedeganckstraat 359000 GhentBelgium Department of BotanyWest Bengal State UniversityBarasatNorth-24-ParganasWest Bengal 700126India Institute of MicrobiologySchool of Ecology and Nature ConservationBeijing Forestry UniversityBeijing 100083China Jawaharlal Nehru Tropical Botanic Garden&Research Institute(JNTBGRI)PalodeThiruvananthapuramKerala 695562India Institute of Agri-foodAnimal and Environmental Sciences(ICA3)Universidad de O’Higgins3070000 San FernandoChile Center of Applied Ecology and Sustainability(CAPES)Pontificia Universidad Católica de Chile8320000 SantiagoChile Department of EcologyEvolution and BehaviorUniversity of Minnesota-Twin CitiesSaint PaulMN 55108USA CAS Key Laboratory for Plant Diversity and Biogeography of East AsiaKunming Institute of BotanyChinese Academy of SciencesKunming 650201YunnanChina Science and Education and The Grainger Bioinformatics CenterThe Field Museum1400 S.Lake Shore Dr.ChicagoIL 60605USA Department of Experimental LimnologyLeibniz Institute of Freshwater Ecology and Inland FisheriesAlte Fischerhuette 216775 StechlinGermany Institute of Biochemistry and BiologyPotsdam UniversityMaulbeerallee 214469 PotsdamGermany Department of Plant ProtectionUniversity of GuilanRashtIran Institute of Arctic BiologyUniversity of AlaskaFairbanks311 Irving I Building2140 Koyukuk DrivePO Box 757000FairbanksAK 99775-7000USA MTA-EKE Lendület Environmental Microbiome Research GroupEszterházy Károly UniversityEgerHungary Institute of Agricultural and Environmental SciencesEstonian University of Life SciencesTartuEstonia Department of Natural Environmental StudiesUniversity of Tokyo5-1-5 KashiwanohaKashiwa 277-0882ChibaJapan Escuela de BiologiaUniversidad de Costa Rica11501 San JoseCosta Rica Genetic Resource CentreLatvian State Forest Research Institute“Silava”111 Rigas strSalaspils LV-2169Latvia Sydney Medical School and Westmead Clinical School and Westmead Institute for Medical ResearchUniversity of SydneySydneyNSWAustralia Westmead HospitalSydneyNSWAustralia Biological Research Center Szeged6726 SzegedHungary State Key Laboratory of MycologyInstitute of MicrobiologyChinese Academy of SciencesBeijing 100101China National Reference Center for Invasive Fungal Infections(NRZMyk)Leibniz Institute forNatural Product Research and Infection Biology-Hans Knöll Institute(HKI)JenaGermany Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN 47907USA Departamento de EcologíaPontificia Universidad Católica de ChileAlameda 340SantiagoChile Department of Organismal BiologyUppsala UniversityUppsalaSweden Southern Swedish Forest Research CentreSwedish University of Agricultural Sciences(SLU)AlnarpSweden Department of EcologySwedish University of Agricultural SciencesUppsalaSweden Institute of Plant and Animal EcologyUral BranchRussian Academy of Sciences8th MarchStreet 202/3EkaterinburgRussia 620144 Manaaki Whenua-Landcare ResearchPrivate Bag 92170Auckland 1142New Zealand Institute of Forestry and Environmental SciencesUniversity of ChittagongChittagongBangladesh Department of Biological SciencesUniversity of MemphisMemphisTNUSA Department of BiologyCollege of ScienceUnited Arab Emirates UniversityAl-AinAbu-DhabiUAE Key Laboratory of Marine Biogenetic ResourcesThird Institute of OceanographyMinistry of Natural Resources184 Daxue RoadXiamen 361005China Department of BiochemistryGenetics and MicrobiologyForestry Agricultural Biotechnology Institute(FABI)University of PretoriaPretoriaSouth Africa State Key Laboratory of Soil and Sustainable AgricultureInstitute of Soil ScienceChinese Academy of SciencesEast Beijing Road 71Nanjing 210008China Royal Botanic Gardens VictoriaMelbourneVIC 3004Australia College of Marine Life SciencesOcean University of ChinaQingdao 266003China School of Food and Pharmaceutical EngineeringGuizhou Institute of TechnologyGuiyang 550003China Graduate School of BioresourcesMie UniversityMieJapan Arctic Research CenterHokkaido UniversitySapporoJapan
出 版 物：《Fungal Diversity》 (真菌多样性（英文）)
年 卷 期：2020年第107卷第2期
页 面：I0001-I0016页
核心收录：
学科分类：0710[理学-生物学] 071001[理学-植物学] 0830[工学-环境科学与工程（可授工学、理学、农学学位）] 07[理学] 0713[理学-生态学]
基 金：Estonian Science Foundation grants PSG136,PRG632,PUT1170 the University of Tartu(PLTOM20903) the European Regional Development Fund(Centre of Excellence EcolChange).
主 题：Fungal traits Trophic modes Function Guild Bioinformatics High-throughput sequencing Community ecology
摘 要：The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold.
维普期刊数据库