Oryza pan-genomics: A new foundation for future rice research and improvement

作     者：Chao Huang Zhuo Chen Chengzhi Liang Chao Huang;Zhuo Chen;Chengzhi Liang

作者机构：State Key Laboratory of Plant GenomicsInstitute of Genetics and Developmental BiologyInnovation Academy for Seed DesignChinese Academy of SciencesBeijing 100101China University of Chinese Academy of SciencesBeijing 100049China 

出 版 物：《The Crop Journal》 (作物学报（英文版）)

年 卷 期：2021年第9卷第3期

页      面：622-632页

核心收录：

学科分类：09[农学] 0901[农学-作物学] 

基　　金：supported by Chinese Academy of Sciences"Strategic Priority Research Program"(XDA24040201) National Key Research and Development Program of China(2020YFE0202300) State Key Laboratory of Plant Genomics 

主　　题：Oryza Pan-genome De novo assembly Genetic diversity Wild rice 

摘      要：The wild rice species in the genus Oryza harbor a large amount of genetic diversity that has been untapped for rice ***-genomics has revolutionized genomic research in ***,rice pan-genomic studies so far have been limited mostly to cultivated accessions,with only a few close wild *** in sequencing technologies have permitted the assembly of highquality rice genome sequences at low cost,making it possible to construct genus-level pan-genomes across all *** this review,we summarize progress in current research on genetic and genomic resources in Oryza,and in sequencing and computational technologies used for rice genome and pangenome *** future work,we discuss the approaches and challenges in the construction of,and data access to,Oryza pan-genomes based on representative high-quality genome *** Oryza pan-genomes will provide a basis for the exploration and use of the extensive genetic diversity present in both cultivated and wild rice populations.